Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04317 and RBAM_026580
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:47
# Commandline: needle
# -asequence dna-align/BSNT_04317___ytrP.1.9828.seq
# -bsequence dna-align/RBAM_026580___ytrP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04317___ytrP-RBAM_026580___ytrP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04317___ytrP-RBAM_026580___ytrP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04317___ytrP
# 2: RBAM_026580___ytrP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1854
# Identity: 1234/1854 (66.6%)
# Similarity: 1234/1854 (66.6%)
# Gaps: 219/1854 (11.8%)
# Score: 3867.5
#
#
#=======================================
BSNT_04317___ 1 ATGGTAGAACAAACTAAAGATCAATTATCCGCCTTTCATTATCATATGCT 50
|||..|.|||||||.|..|||.||.|..|.|||||||||.|..|.|||||
RBAM_026580__ 1 ATGAAAAAACAAACAATTGATGAAGTGACGGCCTTTCATCAGAAAATGCT 50
BSNT_04317___ 51 TGATTTTTTATTAACCAAATCTGAAAAAGTCACATTCACCGACTCTTTCA 100
|..||||||.|||||.|||||||||...|||.||||..|||||||..|..
RBAM_026580__ 51 TTCTTTTTTCTTAACGAAATCTGAATCCGTCTCATTATCCGACTCGCTGT 100
BSNT_04317___ 101 TATGGCTGACTTCGGCTATTCAAACCTATTTTTCAACCCTTTGTGTTTCG 150
||||||||.|.||.|||.|..||.|||..|||.||.|.||||...|..|.
RBAM_026580__ 101 TATGGCTGGCCTCAGCTCTAGAATCCTGCTTTACATCTCTTTCATTGACC 150
BSNT_04317___ 151 CTTACACCGTCATCATC-AGACTTTGTGAC----AAAACAGGCAGATGGA 195
|||.|||||.||..||| |.||.|| |.|| |||||| |.||||
RBAM_026580__ 151 CTTTCACCGGCAGAATCAACACGTT-TCACCATAAAAACA-GAAGAT--- 195
BSNT_04317___ 196 GAAGCGCGTTTT--TCCGCTTCAAAAATAAA--------CGCTTCATGTT 235
|||.|||.||.| |||||| .|||.|.| ||.||.|||.|
RBAM_026580__ 196 GAACCGCATTATGCTCCGCT---GAAAGAGAGTGACGGCCGTTTTATGAT 242
BSNT_04317___ 236 ACCTGATTGAGGACGGCTCCGGCAGGTGTTTCCATCTTGCGTGC-----A 280
|..||.|.| ||| |||||||||.|..||..|||| |||| |
RBAM_026580__ 243 -CAGGAATCA-GAC--CTCCGGCAGATCCTTTTATCT---GTGCTCGGAA 285
BSNT_04317___ 281 GGCAGGATGAAGAGATTCCTGAAGGGCTTCCGGACGTGGTTGCTTCGTTT 330
|||.||.|| ..|||.||.|||....|.||.||..|.|||.||..||||
RBAM_026580__ 286 GGCGGGCTG--CCGATCCCGGAATCATTGCCTGAGATCGTTACTCAGTTT 333
BSNT_04317___ 331 TTAAACCAGTCGATGAAACAGGAAA---GACTCTATAATAAAACG----A 373
.|.||.||.||..|||.|| ||| |.||.|.|.|.|||||| |
RBAM_026580__ 334 ATTAATCAATCTGTGAGAC---AAAGCGGGCTGTTTGACAAAACGAAGCA 380
BSNT_04317___ 374 TCTACCAAAAAAAGATATACAAAATGACGGAGCTGTTCCATTCACTGCTT 423
||..|..||| ||..|||.||||||.||..||||||||||.||..|.
RBAM_026580__ 381 TCAGCGGAAA----ATTCACAGAATGACAGAAATGTTCCATTCGCTTTTG 426
BSNT_04317___ 424 GATCAGACAGATGTGCTGAA------GCAGCTTTTAGAAAGCTTGA--CC 465
||.||.|..||.||..||.| |||| |.|||.|||| .|
RBAM_026580__ 427 GACCAAAATGAGGTTTTGGAAAAACTGCAG------GCAAGTTTGAGTAC 470
BSNT_04317___ 466 AGCACATTTTC---TCTTTTTGAGTTTTCTTTATTTATATCGCACGATCA 512
.|| |||| |||||..| .|||||..|.|||||..||||.|||||
RBAM_026580__ 471 GGC----TTTCCGGTCTTTCCG-TTTTTCACTGTTTATCACGCAGGATCA 515
BSNT_04317___ 513 AGACCAATGTTTAGGGA--------TTCCTGCAAAAGAGCTGTATATGGA 554
.|| ||.||| ||||.||||||||..|..|||||||
RBAM_026580__ 516 GGA--------TACGGACAGACAGCTTCCCGCAAAAGAATTACATATGGA 557
BSNT_04317___ 555 AGGGGAAAA-AT-CCGATTCCTTTGCGCTCAAAGTGTATTTGTC-CGGAG 601
.|||||| || |||||.|.|.|||.||.||.||.|||||.|| .||||
RBAM_026580__ 558 --CGGAAAAGATGCCGATCCGTCTGCCCTGAAGGTTTATTTATCGGGGAG 605
BSNT_04317___ 602 ACATTTTGCGGA-AAAATGAA--TCTGCCGCCTATATTCCGATCAAAGGA 648
|| |||..| ||||.|.| ||..|.||.|||.|.|||||||||||.
RBAM_026580__ 606 AC----TGCTCAGAAAAGGCAGGTCATCTGCTTATCTGCCGATCAAAGGC 651
BSNT_04317___ 649 CAGCAGGGCACATACGGGGTGTTGAA--------GGCTGAAGGAACGGGT 690
||||||||.||.||||||||..|||| |||||.|||| |
RBAM_026580__ 652 CAGCAGGGGACTTACGGGGTTCTGAAGACGGAGGGGCTGCAGGA-----T 696
BSNT_04317___ 691 GACAG--CTTTCTTGCTGATGCCTGC-CTTGATGAAATGTCGATGTTAGC 737
| |.| |||||.|||.| |.| ||...|||||||..|.||.|.||
RBAM_026580__ 697 G-CCGTTCTTTCGTGCAG-----TACTCTCAGTGAAATGCTGCTGCTTGC 740
BSNT_04317___ 738 AAACGCCGCGGGAAAAGCGTTTGAAAATGCCCAGCTCTACGAACAATCCA 787
...|||.|||||||||||.|||||||||||.||||||||.||.|||||.|
RBAM_026580__ 741 GGGCGCAGCGGGAAAAGCATTTGAAAATGCGCAGCTCTATGAGCAATCGA 790
BSNT_04317___ 788 AAGCAAGCATCGCAAATTTGGAATTGATTAATGAAACATCACGACGCCTG 837
||..||||||.||.|||.||||..|.||||||||||||||.||.|..|||
RBAM_026580__ 791 AAAAAAGCATTGCGAATCTGGAGCTCATTAATGAAACATCGCGCCAGCTG 840
BSNT_04317___ 838 AATCAGCGGCTGACATTGACTGATACAATGAATGATCTGGCTGTGAGAAT 887
||||||||.||.|.|.|.||||||||.|||...||.||.||.|..|..||
RBAM_026580__ 841 AATCAGCGCCTCAGACTCACTGATACGATGCGGGAGCTCGCCGCCATTAT 890
BSNT_04317___ 888 GGCAGAATCGTTTCAGGCAGAAGAAGTGGGATTTTTTCATATAGACCATT 937
|.|..||||||||||.||.||||||||||..|||||||||||.||.||||
RBAM_026580__ 891 GACCCAATCGTTTCATGCGGAAGAAGTGGCTTTTTTTCATATTGATCATT 940
BSNT_04317___ 938 TTGAAAACCTAACAT-TGCTCCCAGG-CAGCACAGCATTTTTTAA---AG 982
||| |.||..||.|| ||||.||.|| || .||.||.|||||||| ||
RBAM_026580__ 941 TTG-AGACGCAAAATCTGCTTCCGGGACA-TACCGCTTTTTTTAAGACAG 988
BSNT_04317___ 983 AA---GCGAAGCAGTCAGATTTTTATAATGAGC----TGAAAGAAAAGCT 1025
|| |||||.| .|||| ||.||| |||||||||||||
RBAM_026580__ 989 AACGTGCGAACC---------CTTAT-ATCAGCATTGTGAAAGAAAAGCT 1028
BSNT_04317___ 1026 GTATGAAGGTGAAAAAGGGGTTTTCATCGGGAATGGCCAGTCTGTTTTTG 1075
||..||.||.|||||.||.||.||.|||||.|..||..||.||||.||.|
RBAM_026580__ 1029 GTTCGAGGGAGAAAAGGGCGTGTTTATCGGCAGCGGAAAGACTGTATTCG 1078
BSNT_04317___ 1076 G-GAAGGCGGGGTACGGCTCGCTGATGGCTGCTCCGATGATTCAAAACG- 1123
| |||..| ||.|.|||||||||||||||.|..||||||||..||||.|
RBAM_026580__ 1079 GCGAAAAC-GGTTTCGGCTCGCTGATGGCGGTGCCGATGATCGAAAATGA 1127
BSNT_04317___ 1124 -ACCGGCTTTTAGGCTTTGCGGTTTTATTGAAACAGGAGCTGTACGCTTT 1172
|||| |.||.||.||.|||.|||||||||||.||||..||||.|||||
RBAM_026580__ 1128 CACCG--TCTTCGGGTTCGCGATTTTATTGAAAAAGGATTTGTATGCTTT 1175
BSNT_04317___ 1173 TACATTTGAAATGTACAAGCTGTTTCAGGCGCTGATTCATCACGCGACAC 1222
|||.|||||||||||.|||||.|||||.|||||.|||||.||.||||||.
RBAM_026580__ 1176 TACGTTTGAAATGTATAAGCTTTTTCAAGCGCTCATTCACCATGCGACAT 1225
BSNT_04317___ 1223 TGGCTGTAACCAATTCAATGCTTCGCGACCGCCTTGAGCATCTCGTGAAA 1272
||||.||.||.||.||.|||||.||||||.|.|||||||||||.||..|.
RBAM_026580__ 1226 TGGCGGTCACGAACTCCATGCTGCGCGACAGGCTTGAGCATCTTGTTCAG 1275
BSNT_04317___ 1273 ACAGATCAGCTGACTGAACTGTTTTCACGAGCGTATTTAGATGAAAAAAT 1322
|||||.||||||||.||.||||.||||.||.|.|||.|.|||||.|||||
RBAM_026580__ 1276 ACAGACCAGCTGACGGAGCTGTATTCAAGAACCTATCTGGATGAGAAAAT 1325
BSNT_04317___ 1323 CCAATACAGCATGAAAATCCACCAAAAGGGTGTTTTTATTCTTGTTGATA 1372
.|||||||||||||||||.||..||..||||||.||.||.||.|||||||
RBAM_026580__ 1326 TCAATACAGCATGAAAATTCATAAACGGGGTGTATTCATCCTCGTTGATA 1375
BSNT_04317___ 1373 TTGATAATTTTAAAAATGTAAATGATACGTACGGCCATCAGACTGGGGAC 1422
|.||||||||.||||||.|.||||||||.|||||.|||||.||.||.||.
RBAM_026580__ 1376 TCGATAATTTCAAAAATATTAATGATACATACGGTCATCAAACGGGAGAT 1425
BSNT_04317___ 1423 GAGATTTTAATTCAAGTCGCTTCAGTGATTAAAAGCAACATCCGAAAGCA 1472
..|||..|.|||||.||.||..|.||.||.||.|.|.|.||.||..||||
RBAM_026580__ 1426 TCGATCCTGATTCAGGTGGCCACCGTTATGAAGAACCATATTCGTGAGCA 1475
BSNT_04317___ 1473 TGATGTCGGTGCCCGCTGGGGAGGCGAGGAACTGGCGATTTATTTGCCAA 1522
||||||||.|||..|.|||||.||||||||.|||||..|.|||.||||.|
RBAM_026580__ 1476 TGATGTCGCTGCGAGGTGGGGGGGCGAGGAGCTGGCTGTCTATCTGCCGA 1525
BSNT_04317___ 1523 AT------GTG----CCGGTTGCAGTGGGGAAACGGATTACCGAGCGACT 1562
|| ||| |||| || ||||.||..|..|..|.||
RBAM_026580__ 1526 ATATCAACGTGTCATCCGG----AG------AACGCATCGCTAAAAGGCT 1565
BSNT_04317___ 1563 GGTTTACGCAGTCAGAAAAAATACGAAACCCGAG------GTAACCATTT 1606
||||..|||..||.|..|||||| ||||| ||.||.||||
RBAM_026580__ 1566 GGTTCGCGCCATCCGGGAAAATA------CCGAGCCGCGCGTGACGATTT 1609
BSNT_04317___ 1607 CCTGCGGTATCTCCTGCTGGACGACAGAAACAAAA----------AAGTC 1646
|||||||..|.|||||||||.| ||| |.|.|
RBAM_026580__ 1610 CCTGCGGCGTTTCCTGCTGGTC----------AAAGACCGGCCCGATGCC 1649
BSNT_04317___ 1647 GCTGAAAGAGCTTGTGCATGAGGCAGATGAAGCGCTCTACAGCGCGAAAC 1696
|.|||||..|||.||.||..|.||.|||||.|||||.||.|.|||.||||
RBAM_026580__ 1650 GTTGAAATTGCTCGTTCAGCAAGCGGATGAGGCGCTTTATATCGCCAAAC 1699
BSNT_04317___ 1697 GGAGCGGGAAAAACCGCTTGATGATTCATGACTCAATA----------AA 1736
|||.|||.||||||||..||||.||.|| ||||.| |.
RBAM_026580__ 1700 GGAACGGCAAAAACCGGCTGATCATCCA----TCAAAACAGCACGACGAC 1745
BSNT_04317___ 1737 ATAA 1740
||||
RBAM_026580__ 1746 ATAA 1749
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