Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04306 and RBAM_026500

See Amino acid alignment / Visit BSNT_04306 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:45
# Commandline: needle
#    -asequence dna-align/BSNT_04306___sspA.1.9828.seq
#    -bsequence dna-align/RBAM_026500___sspA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04306___sspA-RBAM_026500___sspA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04306___sspA-RBAM_026500___sspA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04306___sspA
# 2: RBAM_026500___sspA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 222
# Identity:     182/222 (82.0%)
# Similarity:   182/222 (82.0%)
# Gaps:          12/222 ( 5.4%)
# Score: 763.5
# 
#
#=======================================

BSNT_04306___      1 ATGGC-TAACAAT--AACTCAGGTAACAGCAACAACCTTTTAGTACCAGG     47
                     |||.| .||||||  |||...||.|||||||||.|.||||||||.|||||
RBAM_026500__      1 ATGTCACAACAATCAAACAGCGGAAACAGCAACCAGCTTTTAGTGCCAGG     50

BSNT_04306___     48 AGCTGCTCAAGCGATCGACCAAATGAAATTAGAAATCGCTTCTGAATTCG     97
                     .|||||||||||.||||||||||||||.|..|||||||||||||||||||
RBAM_026500__     51 CGCTGCTCAAGCTATCGACCAAATGAAGTATGAAATCGCTTCTGAATTCG    100

BSNT_04306___     98 GTGTAAACCTTGGAGCAGACACAACTTCTCGCGCTAACGGTTCTGTTGGA    147
                     ||||||||||||||.|.||.||||||||||||||.|||||||||||.||.
RBAM_026500__    101 GTGTAAACCTTGGACCGGAAACAACTTCTCGCGCCAACGGTTCTGTCGGT    150

BSNT_04306___    148 GGAGAGATCACAAAACGTCTTGTATCTTTTGCTCAACAAAACATGGGCGG    197
                     |||||.|||||||||||||||||.|||||||||||.||||.|||||||||
RBAM_026500__    151 GGAGAAATCACAAAACGTCTTGTCTCTTTTGCTCAGCAAAGCATGGGCGG    200

BSNT_04306___    198 AGG---------ACAATTCTAA    210
                     |.|         .||.||.|||
RBAM_026500__    201 AAGCAGCCAGCAGCAGTTTTAA    222


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