Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04302 and RBAM_026470

See Amino acid alignment / Visit BSNT_04302 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:45
# Commandline: needle
#    -asequence dna-align/BSNT_04302___ppnK.1.9828.seq
#    -bsequence dna-align/RBAM_026470___ppnK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04302___ppnK-RBAM_026470___ppnK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04302___ppnK-RBAM_026470___ppnK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04302___ppnK
# 2: RBAM_026470___ppnK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 847
# Identity:     624/847 (73.7%)
# Similarity:   624/847 (73.7%)
# Gaps:          59/847 ( 7.0%)
# Score: 2323.5
# 
#
#=======================================

BSNT_04302___      1 ------------------------ATGACCGATCAACGCCGTAATGTTTA     26
                                             ||||||||||..|||||.||||||||
RBAM_026470__      1 ATGACAGCAAAGGGGAATGGGGATATGACCGATCTTCGCCGCAATGTTTA     50

BSNT_04302___     27 TTTTTTTCACAAACAGGATCAGGAAACGAACGAACAAGCCCGCTCGTTAA     76
                     |||||||||||||||..|..|.|||||.||.|||||||.|.||||.||.|
RBAM_026470__     51 TTTTTTTCACAAACAAAACAACGAAACAAAAGAACAAGTCAGCTCTTTGA    100

BSNT_04302___     77 CACAATTGGCGGAAGAGCATGGATTTACCGTTG----TGAACC--AGCAC    120
                     ..||..|.||.|||..|||.||.|||||.||||    |.||||  ||   
RBAM_026470__    101 AGCAGCTTGCTGAATCGCACGGTTTTACAGTTGCGGCTCAACCGGAG---    147

BSNT_04302___    121 TCAGACGCTAATATTATCGCTAGCATTGGCGGGGACGGCACATTTTTGCA    170
                        ||.||....||||||||.|||||.|||.|.||||||.|||||.||||
RBAM_026470__    148 ---GATGCGGGAATTATCGCCAGCATCGGCAGTGACGGCTCATTTCTGCA    194

BSNT_04302___    171 GGCAGTCAGAAAGAC--GAATTTTCGTGACGACTGCTTGTACGTCGGCAT    218
                     .||.||||||||.||  ||  ||.|||||.||||||.||||.||||||||
RBAM_026470__    195 AGCCGTCAGAAAAACCGGA--TTCCGTGATGACTGCCTGTATGTCGGCAT    242

BSNT_04302___    219 TACCAAAAAGGGGAAAGCTCATTTATATTGCGACTTTCATAGTGATGAGC    268
                     ..|.|||||.||||||||.|||||.||.|||||.|||||.||.|||||.|
RBAM_026470__    243 CGCTAAAAAAGGGAAAGCCCATTTGTACTGCGATTTTCACAGCGATGAAC    292

BSNT_04302___    269 GAGAAAAAATGGTCGATGC---AATGACGTTTGAACAAATTGAAGTGAGA    315
                     ..|||||||||| ||  ||   .|||||....|||||..||||.||.|||
RBAM_026470__    293 CTGAAAAAATGG-CG--GCCAGCATGACCGCGGAACAGCTTGAGGTCAGA    339

BSNT_04302___    316 AAATATCCGCTGATTGAAGTGACAGTGGATAACGCCAG---TCCTTTTCA    362
                     |||||.|||||.|||.|.||.||.||||   |||.|||   ||.||||||
RBAM_026470__    340 AAATACCCGCTCATTCACGTAACGGTGG---ACGGCAGCAATCATTTTCA    386

BSNT_04302___    363 TTGCCTAAACGAGGTTTCCATCCGTTCAAGCATCATTAAAACCTTTGTGA    412
                     .||..||||||||||||||||||||||||||||.||||||||.|||||||
RBAM_026470__    387 CTGTTTAAACGAGGTTTCCATCCGTTCAAGCATTATTAAAACGTTTGTGA    436

BSNT_04302___    413 TGGACGTGCTGATTGACGATCTGCACTTTGAAACGTTTAGAGGTGACGGA    462
                     ||||.|||.|.|||||.|||||.||.|||||.|||||.|||||.|||||.
RBAM_026470__    437 TGGATGTGTTAATTGATGATCTTCATTTTGAGACGTTCAGAGGAGACGGG    486

BSNT_04302___    463 ATGATCATCTCAACGCCTACAGGCAGCACCGCCTATAACAAGTCTGTTGC    512
                     ||||||||.||.||.||.||.||||||||||||||.||.||.||||||.|
RBAM_026470__    487 ATGATCATTTCCACCCCGACGGGCAGCACCGCCTACAATAAATCTGTTTC    536

BSNT_04302___    513 AGGAGCGGTTGTTGATCCGCTGCTCCCATGCATGCAGGTATCTGAGCTTG    562
                     |||.||.|||||||||||..||.|..|.||||||||||||||.||.||.|
RBAM_026470__    537 AGGCGCCGTTGTTGATCCTTTGATTTCCTGCATGCAGGTATCCGAACTGG    586

BSNT_04302___    563 CTTCTCTTAACAATAACACCTACCGGACACTCGGCTCGCCATTTGTCCTC    612
                     |.||..|.|||||.|||||.|||||.||||||||.||..|.|||.|..|.
RBAM_026470__    587 CATCGTTGAACAACAACACATACCGTACACTCGGATCTTCGTTTATTTTA    636

BSNT_04302___    613 AGCTCTGACCGAAAGCTGACCCTTCGTGTGGTGCAGGACGGCAACGAACA    662
                     |||||.||.||.||||||||.||.|..||||||||.||||||||.||.||
RBAM_026470__    637 AGCTCAGAACGGAAGCTGACACTGCAGGTGGTGCAAGACGGCAATGAGCA    686

BSNT_04302___    663 CCCAATCATC-GGCTTGGACAATGAAGCACTCAGCACGAGAAATGTGAAA    711
                     .||.||.||| ||||| ||.||||||||.|||||||||.|.|||||.|||
RBAM_026470__    687 TCCGATTATCGGGCTT-GATAATGAAGCGCTCAGCACGCGGAATGTCAAA    735

BSNT_04302___    712 ACGATCGAAATCAAACTGTCTAATAAGAAAATCAAAACAGTCAAACTAAA    761
                     |.|.|.||.||.|.|||.||..||||.|||||||||||.||.|||||.||
RBAM_026470__    736 AAGGTTGAGATTAGACTATCCGATAAAAAAATCAAAACGGTGAAACTGAA    785

BSNT_04302___    762 GGACAATTCATTTTGGGAAAAAGTGAAGCGTACTTTTTTAT----AG    804
                     .|||||.||.||.|||||||||||.||.||..|.|||||||    | 
RBAM_026470__    786 AGACAACTCTTTCTGGGAAAAAGTAAAACGATCATTTTTATCATAA-    831


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04302 and RBAM_026470

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
