Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04299 and RBAM_026460
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:45
# Commandline: needle
# -asequence dna-align/BSNT_04299___sppA.1.9828.seq
# -bsequence dna-align/RBAM_026460___sppA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04299___sppA-RBAM_026460___sppA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04299___sppA-RBAM_026460___sppA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04299___sppA
# 2: RBAM_026460___sppA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1037
# Identity: 780/1037 (75.2%)
# Similarity: 780/1037 (75.2%)
# Gaps: 58/1037 ( 5.6%)
# Score: 2942.0
#
#
#=======================================
BSNT_04299___ 1 ATGAATGCAAAAAGATGGATTGCATTAGTGATTGCTCTGGGGATTTTCGG 50
|||||||||||||||||||||||..|.||.||.||.||.||.||||||||
RBAM_026460__ 1 ATGAATGCAAAAAGATGGATTGCGCTCGTCATCGCGCTCGGCATTTTCGG 50
BSNT_04299___ 51 CGTGTCTATTATC-GTCAGCATCTCTATGAGTTTCTTTGAAAG------C 93
|| |||| |||| |||.||| |
RBAM_026460__ 51 CG-------TATCAGTCA------------------TTGCAAGTGTGACC 75
BSNT_04299___ 94 GTCAAAGGCGCTCAA-------------AC-GGATCTCA-----CATCAC 124
||| ..||.|||.|| || ||.|||.| ||||||
RBAM_026460__ 76 GTC-GGGGTGCTGAAGAATATCGGAGATACAGGGTCTGACTTTGCATCAC 124
BSNT_04299___ 125 TGACGGATGAATCGCAGGAAAAGACGCTGGAAAACGGCAGTCTCTCAAGT 174
||||.|||||..|..|||||..|||||||||.||.|||||.|.|...|||
RBAM_026460__ 125 TGACAGATGACACAGAGGAAGTGACGCTGGATAAGGGCAGCCCCGGCAGT 174
BSNT_04299___ 175 AAAATTGCCGTATTAGAGGTCAGCGGCACCATTCAGGATAATGGGGACTC 224
|||||.|||||..|.||.||...||||||.|||.|||||||.||.|..||
RBAM_026460__ 175 AAAATCGCCGTGCTTGAAGTGGACGGCACGATTGAGGATAACGGCGGGTC 224
BSNT_04299___ 225 AAGC-AGTCTGCTTGGTGCAGACGGATATAACCACAGAACGTTCTTAAAA 273
.|| .|.|||||..|..|||.|||.|||.|.||||||.|.||.||||||
RBAM_026460__ 225 -CGCTGGCCTGCTCAGCTCAGGCGGGTATGATCACAGATCATTTTTAAAA 273
BSNT_04299___ 274 AACCTTGAGCGCGCAAAAGATGACAAGACGGTCAAAGGTATCGTTCTGAA 323
.|..|||||||.||.|||||.|||||.|..||||||||.||.||.|||||
RBAM_026460__ 274 CAGGTTGAGCGTGCGAAAGAAGACAAAAGCGTCAAAGGAATTGTGCTGAA 323
BSNT_04299___ 324 GGTGAATTCTCCGGGTGGCGGAGTGTATGAAAGTGCTGAAATACATAAGA 373
..|.|||||.||.||.||.||.|||||.|||||.||.|||||||||||.|
RBAM_026460__ 324 AATCAATTCCCCTGGCGGAGGCGTGTACGAAAGCGCGGAAATACATAAAA 373
BSNT_04299___ 374 AACTGGAAGAAATCAAGAAAGAAACGAAAAAACCGATTTACGTGTCAATG 423
|||||||||||.|.||||||||||||||.|||||||||||.||.||.|||
RBAM_026460__ 374 AACTGGAAGAACTAAAGAAAGAAACGAAGAAACCGATTTATGTATCCATG 423
BSNT_04299___ 424 GGTTCGATGGCAGCATCAGGAGGCTATTACATCTCAGCAGCGGCTGATAA 473
||.||.|||||.|||||.||||||||.||.||.|||.|.||.||.|||||
RBAM_026460__ 424 GGCTCCATGGCGGCATCGGGAGGCTACTATATTTCAACGGCCGCCGATAA 473
BSNT_04299___ 474 GATTTTTGCGACACCGGAAACCCTGACCGGGTCACTCGGCGTCATTATGG 523
.||.|.|||..||||||||||.||.||.||.|||||.||||||||.||||
RBAM_026460__ 474 AATCTATGCTTCACCGGAAACGCTCACGGGTTCACTGGGCGTCATCATGG 523
BSNT_04299___ 524 AAAGCGTCAATTATTCAAAACTTGCCGATAAGCTTGGCATTTCTTTTGAA 573
||||||||||||||||.||.||.||||||.|.||.|||||....||||||
RBAM_026460__ 524 AAAGCGTCAATTATTCCAAGCTCGCCGATGAACTCGGCATCAAGTTTGAA 573
BSNT_04299___ 574 ACGATTAAGAGCGGGGCCCATAAGGACATTATGTCTCCTTCCCGTGAGAT 623
||.|||||.|||||.||.|||||.|||||.|||||.||..||||.||.||
RBAM_026460__ 574 ACCATTAAAAGCGGCGCGCATAAAGACATCATGTCCCCGACCCGCGACAT 623
BSNT_04299___ 624 GACGAAAGAAGAAAAAAACATCATGCAATCGATGGTTGATAATTCGTATG 673
||||||.|||||||.|||.||||||||..|.|||||..|..||||.||||
RBAM_026460__ 624 GACGAAGGAAGAAAGAAAGATCATGCAGACAATGGTCAACGATTCTTATG 673
BSNT_04299___ 674 AAGGCTTTGTTGATGTCATTTCAAAAGGGC-GCAGCATGTCGAAAGCAGA 722
||||.|||||..||||||||||||||||.| ||| ||||||.|||||.||
RBAM_026460__ 674 AAGGATTTGTCAATGTCATTTCAAAAGGCCGGCA-CATGTCAAAAGCGGA 722
BSNT_04299___ 723 GGTAAAGAAAATTGCGGACGGCCGCGTGTATGACGGACGGCAGGCGAAAA 772
.||.||.||||||||.||||||||.||.||.|||||..|.||.|||||||
RBAM_026460__ 723 TGTGAAAAAAATTGCCGACGGCCGTGTTTACGACGGCAGACAAGCGAAAA 772
BSNT_04299___ 773 AACTGAACCTCGTTGATGAGCTTGGTTTTTATGACGATACCATTACGGCC 822
||.|...||||||||||||.||.||||||||.||.||.||.||.|..||.
RBAM_026460__ 773 AAATCGGCCTCGTTGATGACCTCGGTTTTTACGATGACACGATCAGCGCG 822
BSNT_04299___ 823 ATGAAAAAGGATCACAAGGATTTGAAAAACGCCTCTGTCATTTCTTATGA 872
|||||||||||.||.||..||.||||||||||.||.|||||..|.||.||
RBAM_026460__ 823 ATGAAAAAGGACCATAAAAATATGAAAAACGCTTCAGTCATCACATACGA 872
BSNT_04299___ 873 GGAAAGCTTCGGATTAGGCTCACTGTTTTCCATGGGCGCGAAC-AAAATG 921
||||.|.||||||||||||||.||.|||||||||.|||| |.| ||||||
RBAM_026460__ 873 GGAAGGATTCGGATTAGGCTCGCTCTTTTCCATGAGCGC-AGCGAAAATG 921
BSNT_04299___ 922 TTTAAAAGTGAAATTGATTTTTTGAATATGAGAGAAATTCTATCGCAATC 971
||||||||.||||||||||||.|||||||||.||||.|..|.||||||||
RBAM_026460__ 922 TTTAAAAGCGAAATTGATTTTCTGAATATGAAAGAACTCATTTCGCAATC 971
BSNT_04299___ 972 CGGTTCGCCGAGAATGATGTATCTCTATGCGAAGTAG 1008
||||||||||.|.|||||||||||||||||.||||||
RBAM_026460__ 972 CGGTTCGCCGCGGATGATGTATCTCTATGCAAAGTAG 1008
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