Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04294 and RBAM_026410
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:44
# Commandline: needle
# -asequence dna-align/BSNT_04294___ytxK.1.9828.seq
# -bsequence dna-align/RBAM_026410___ytxK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04294___ytxK-RBAM_026410___ytxK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04294___ytxK-RBAM_026410___ytxK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04294___ytxK
# 2: RBAM_026410___ytxK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1023
# Identity: 762/1023 (74.5%)
# Similarity: 762/1023 (74.5%)
# Gaps: 69/1023 ( 6.7%)
# Score: 2779.5
#
#
#=======================================
BSNT_04294___ 1 ATGCAAAAAGACCATGTAGGTGCGGTGTATGAGCTGTTAAACGAAGCCGC 50
||||||.|.||||||||.|||..|.|.|||||.||.|||.|.|||||.||
RBAM_026410__ 1 ATGCAACACGACCATGTCGGTCAGATTTATGAACTTTTAGATGAAGCTGC 50
BSNT_04294___ 51 ----GATTATGATA-AAGAATGAATTGCAGATTTCATATATAGAGGCGCT 95
| ||||| .||||.|..|| ||||||||.|||||.||||.|||
RBAM_026410__ 51 CCAAG----TGATAGCAGAAGGCCTT-CAGATTTCTTATATTGAGGGGCT 95
BSNT_04294___ 96 GGCCGAAGCAGGAGAAATGTATTTTCTTGAAAAAACGGATCAGCTGAAAC 145
.||.|||||.|||||||||||||||||||||||..|.||.|||||
RBAM_026410__ 96 TGCGGAAGCGGGAGAAATGTATTTTCTTGAAAAGGCCGACCAGCT----- 140
BSNT_04294___ 146 TGCCTGCTGATCA-GAAAACCAAA-----CAACTT--CAGGCTCTGCTTG 187
.|.||| ||| |||||.|||| .|.||| ||| .|||||||
RBAM_026410__ 141 --TCCGCT--TCAGGAAAAGCAAATCGGCGAGCTTAACAG--CCTGCTTG 184
BSNT_04294___ 188 AAAAAGCGGAATTCGGCACGTATGAGCATGAGTGGGTACGCAAGGCTTTT 237
..|||||.||.|||.|.|..|..||||||||.|||.|.||||||||.||.
RBAM_026410__ 185 CGAAAGCAGACTTCAGAAAATGGGAGCATGAATGGATCCGCAAGGCGTTC 234
BSNT_04294___ 238 CAGCTTGCCGTCCTTAAAGGAATGAAAGATATCTCTCATCCAAACAGACA 287
|||||.|||.|..|.|||||..|||||||||..||.|||||.||||||||
RBAM_026410__ 235 CAGCTCGCCATTTTAAAAGGGCTGAAAGATAAGTCCCATCCGAACAGACA 284
BSNT_04294___ 288 AATGACGCCGGATACGATCGGGCTTTTCATCAGCTATTTGGTGAATAAGT 337
.||||||||.|||||||||||..||||||||||.||..|.||||||||.|
RBAM_026410__ 285 GATGACGCCTGATACGATCGGCATTTTCATCAGTTACCTCGTGAATAAAT 334
BSNT_04294___ 338 TTA-TGGCGGACAAAAAGGAACTGACCATT-CTTGATCCAGCCTTGGGAA 385
||| .|||||.|.|||||| .|||| |||| ||.||.||.||||..||.|
RBAM_026410__ 335 TTACGGGCGGCCGAAAAGG-CCTGA-CATTGCTGGACCCCGCCTGCGGCA 382
BSNT_04294___ 386 CTGGGAACCTTCTGTTTACCGTGCTGAACCAGCTGTCTGAAAAAACGGCA 435
|.||.||.||||||.|.||||.|...||||||||.|||||.|||.|||||
RBAM_026410__ 383 CCGGAAATCTTCTGCTGACCGCGGCAAACCAGCTTTCTGACAAAGCGGCA 432
BSNT_04294___ 436 AACAGCTTTGGCATTGAAATTGATGATGTGCTCTTGAAAATCGCCTATGC 485
||.|||||.|||||||||||.||.|||||.||..||||.|||||.|||||
RBAM_026410__ 433 AAAAGCTTCGGCATTGAAATCGACGATGTCCTTCTGAAGATCGCTTATGC 482
BSNT_04294___ 486 CCAAGCGAACCTTCTGAAAAAAGAGCTTGAGCTTTTCCACCAGGACAGCC 535
.||.|||||.||.|.|.|||||||..|.|||||.|||..|||||||||.|
RBAM_026410__ 483 TCAGGCGAATCTGCAGGAAAAAGAAATGGAGCTGTTCTGCCAGGACAGTC 532
BSNT_04294___ 536 TTGAGCCGTTGTTTATTGATCCAGTTGACACGGTCATTTGTGATCTGCCA 585
||.|||||||.|||||.||.||.|..||..|||||||.||.|||.||||.
RBAM_026410__ 533 TTCAGCCGTTATTTATCGAACCGGCCGATGCGGTCATCTGCGATTTGCCG 582
BSNT_04294___ 586 GTCGGCTATTATCCGAATGACGAAGGAGCAGAAGCGTTTGAGCTCAAAGC 635
||||||||.|||||||||||||||||.||.||||||||||||||.|||||
RBAM_026410__ 583 GTCGGCTACTATCCGAATGACGAAGGCGCTGAAGCGTTTGAGCTGAAAGC 632
BSNT_04294___ 636 TGACGAAGGCCATTCCTTCGCTCATCATCTGTTTATTGAACAGAGCGTCA 685
.||.||||||||.||.||.||.||.||..|.||||||||.||||||||||
RBAM_026410__ 633 GGATGAAGGCCACTCTTTTGCACACCACTTATTTATTGAGCAGAGCGTCA 682
BSNT_04294___ 686 AGCATACCAAACCGGGCGGCTACTTATTTTTTATGATTCCGAATCATTTG 735
|.|||||.|||||||||||.|||||||||||||||||||||||.|||.||
RBAM_026410__ 683 AACATACAAAACCGGGCGGATACTTATTTTTTATGATTCCGAACCATCTG 732
BSNT_04294___ 736 TTTGAGAGCTCCCAAAGCGGCAAGCTGAAACAGTTTTTCAAAGATAAGGT 785
|||||.|||.|.|||||||..||.|||||.|.||||||....||.||.||
RBAM_026410__ 733 TTTGACAGCGCGCAAAGCGATAAACTGAAGCGGTTTTTTGCGGAAAAAGT 782
BSNT_04294___ 786 TCATATCAACGCACTGTTGCAGCTGCC----AAAATCTATTTTTAAAGAC 831
..||||||||||.||..|.|||||||| | ||||.|||||||||
RBAM_026410__ 783 GTATATCAACGCCCTTCTTCAGCTGCCGGCTA----CTATGTTTAAAGAC 828
BSNT_04294___ 832 GAAGCTCATGCCAAAAGCAT-----CCTTGTGCTTCAGAAACAAGGAGAG 876
|||||.||.||.||.||||| .|||| ||||||.||||.||
RBAM_026410__ 829 GAAGCGCAGGCAAAGAGCATTTTAATCTTG-----CAGAAAAAAGGCGA- 872
BSNT_04294___ 877 TATACG-AAAG-CGCCGGGGCAAA-------TTCTGCTTGCGAATCTTCC 917
|.||| |||| ||||| ||| ||.|| |||||||||||
RBAM_026410__ 873 -AGACGCAAAGCCGCCG----AAACAAGCGCTTTTG---GCGAATCTTCC 914
BSNT_04294___ 918 GTCTTTCTCCAATCAAAAGGCGATGCTTGATATGATGGCTCAATTTGATG 967
.|||||..|.||.||..|||||||||..||.||||.|||..||||.|||.
RBAM_026410__ 915 TTCTTTTGCGAACCAGCAGGCGATGCGGGAGATGACGGCAAAATTGGATC 964
BSNT_04294___ 968 AATGGTTTAAAAAAGAAAAGTAA 990
|||||.||.||||||||||.|||
RBAM_026410__ 965 AATGGATTCAAAAAGAAAAATAA 987
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