Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04294 and RBAM_026410

See Amino acid alignment / Visit BSNT_04294 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:44
# Commandline: needle
#    -asequence dna-align/BSNT_04294___ytxK.1.9828.seq
#    -bsequence dna-align/RBAM_026410___ytxK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04294___ytxK-RBAM_026410___ytxK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04294___ytxK-RBAM_026410___ytxK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04294___ytxK
# 2: RBAM_026410___ytxK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1023
# Identity:     762/1023 (74.5%)
# Similarity:   762/1023 (74.5%)
# Gaps:          69/1023 ( 6.7%)
# Score: 2779.5
# 
#
#=======================================

BSNT_04294___      1 ATGCAAAAAGACCATGTAGGTGCGGTGTATGAGCTGTTAAACGAAGCCGC     50
                     ||||||.|.||||||||.|||..|.|.|||||.||.|||.|.|||||.||
RBAM_026410__      1 ATGCAACACGACCATGTCGGTCAGATTTATGAACTTTTAGATGAAGCTGC     50

BSNT_04294___     51 ----GATTATGATA-AAGAATGAATTGCAGATTTCATATATAGAGGCGCT     95
                         |    ||||| .||||.|..|| ||||||||.|||||.||||.|||
RBAM_026410__     51 CCAAG----TGATAGCAGAAGGCCTT-CAGATTTCTTATATTGAGGGGCT     95

BSNT_04294___     96 GGCCGAAGCAGGAGAAATGTATTTTCTTGAAAAAACGGATCAGCTGAAAC    145
                     .||.|||||.|||||||||||||||||||||||..|.||.|||||     
RBAM_026410__     96 TGCGGAAGCGGGAGAAATGTATTTTCTTGAAAAGGCCGACCAGCT-----    140

BSNT_04294___    146 TGCCTGCTGATCA-GAAAACCAAA-----CAACTT--CAGGCTCTGCTTG    187
                       .|.|||  ||| |||||.||||     .|.|||  |||  .|||||||
RBAM_026410__    141 --TCCGCT--TCAGGAAAAGCAAATCGGCGAGCTTAACAG--CCTGCTTG    184

BSNT_04294___    188 AAAAAGCGGAATTCGGCACGTATGAGCATGAGTGGGTACGCAAGGCTTTT    237
                     ..|||||.||.|||.|.|..|..||||||||.|||.|.||||||||.||.
RBAM_026410__    185 CGAAAGCAGACTTCAGAAAATGGGAGCATGAATGGATCCGCAAGGCGTTC    234

BSNT_04294___    238 CAGCTTGCCGTCCTTAAAGGAATGAAAGATATCTCTCATCCAAACAGACA    287
                     |||||.|||.|..|.|||||..|||||||||..||.|||||.||||||||
RBAM_026410__    235 CAGCTCGCCATTTTAAAAGGGCTGAAAGATAAGTCCCATCCGAACAGACA    284

BSNT_04294___    288 AATGACGCCGGATACGATCGGGCTTTTCATCAGCTATTTGGTGAATAAGT    337
                     .||||||||.|||||||||||..||||||||||.||..|.||||||||.|
RBAM_026410__    285 GATGACGCCTGATACGATCGGCATTTTCATCAGTTACCTCGTGAATAAAT    334

BSNT_04294___    338 TTA-TGGCGGACAAAAAGGAACTGACCATT-CTTGATCCAGCCTTGGGAA    385
                     ||| .|||||.|.|||||| .|||| |||| ||.||.||.||||..||.|
RBAM_026410__    335 TTACGGGCGGCCGAAAAGG-CCTGA-CATTGCTGGACCCCGCCTGCGGCA    382

BSNT_04294___    386 CTGGGAACCTTCTGTTTACCGTGCTGAACCAGCTGTCTGAAAAAACGGCA    435
                     |.||.||.||||||.|.||||.|...||||||||.|||||.|||.|||||
RBAM_026410__    383 CCGGAAATCTTCTGCTGACCGCGGCAAACCAGCTTTCTGACAAAGCGGCA    432

BSNT_04294___    436 AACAGCTTTGGCATTGAAATTGATGATGTGCTCTTGAAAATCGCCTATGC    485
                     ||.|||||.|||||||||||.||.|||||.||..||||.|||||.|||||
RBAM_026410__    433 AAAAGCTTCGGCATTGAAATCGACGATGTCCTTCTGAAGATCGCTTATGC    482

BSNT_04294___    486 CCAAGCGAACCTTCTGAAAAAAGAGCTTGAGCTTTTCCACCAGGACAGCC    535
                     .||.|||||.||.|.|.|||||||..|.|||||.|||..|||||||||.|
RBAM_026410__    483 TCAGGCGAATCTGCAGGAAAAAGAAATGGAGCTGTTCTGCCAGGACAGTC    532

BSNT_04294___    536 TTGAGCCGTTGTTTATTGATCCAGTTGACACGGTCATTTGTGATCTGCCA    585
                     ||.|||||||.|||||.||.||.|..||..|||||||.||.|||.||||.
RBAM_026410__    533 TTCAGCCGTTATTTATCGAACCGGCCGATGCGGTCATCTGCGATTTGCCG    582

BSNT_04294___    586 GTCGGCTATTATCCGAATGACGAAGGAGCAGAAGCGTTTGAGCTCAAAGC    635
                     ||||||||.|||||||||||||||||.||.||||||||||||||.|||||
RBAM_026410__    583 GTCGGCTACTATCCGAATGACGAAGGCGCTGAAGCGTTTGAGCTGAAAGC    632

BSNT_04294___    636 TGACGAAGGCCATTCCTTCGCTCATCATCTGTTTATTGAACAGAGCGTCA    685
                     .||.||||||||.||.||.||.||.||..|.||||||||.||||||||||
RBAM_026410__    633 GGATGAAGGCCACTCTTTTGCACACCACTTATTTATTGAGCAGAGCGTCA    682

BSNT_04294___    686 AGCATACCAAACCGGGCGGCTACTTATTTTTTATGATTCCGAATCATTTG    735
                     |.|||||.|||||||||||.|||||||||||||||||||||||.|||.||
RBAM_026410__    683 AACATACAAAACCGGGCGGATACTTATTTTTTATGATTCCGAACCATCTG    732

BSNT_04294___    736 TTTGAGAGCTCCCAAAGCGGCAAGCTGAAACAGTTTTTCAAAGATAAGGT    785
                     |||||.|||.|.|||||||..||.|||||.|.||||||....||.||.||
RBAM_026410__    733 TTTGACAGCGCGCAAAGCGATAAACTGAAGCGGTTTTTTGCGGAAAAAGT    782

BSNT_04294___    786 TCATATCAACGCACTGTTGCAGCTGCC----AAAATCTATTTTTAAAGAC    831
                     ..||||||||||.||..|.||||||||    |    ||||.|||||||||
RBAM_026410__    783 GTATATCAACGCCCTTCTTCAGCTGCCGGCTA----CTATGTTTAAAGAC    828

BSNT_04294___    832 GAAGCTCATGCCAAAAGCAT-----CCTTGTGCTTCAGAAACAAGGAGAG    876
                     |||||.||.||.||.|||||     .||||     ||||||.||||.|| 
RBAM_026410__    829 GAAGCGCAGGCAAAGAGCATTTTAATCTTG-----CAGAAAAAAGGCGA-    872

BSNT_04294___    877 TATACG-AAAG-CGCCGGGGCAAA-------TTCTGCTTGCGAATCTTCC    917
                      |.||| |||| |||||    |||       ||.||   |||||||||||
RBAM_026410__    873 -AGACGCAAAGCCGCCG----AAACAAGCGCTTTTG---GCGAATCTTCC    914

BSNT_04294___    918 GTCTTTCTCCAATCAAAAGGCGATGCTTGATATGATGGCTCAATTTGATG    967
                     .|||||..|.||.||..|||||||||..||.||||.|||..||||.|||.
RBAM_026410__    915 TTCTTTTGCGAACCAGCAGGCGATGCGGGAGATGACGGCAAAATTGGATC    964

BSNT_04294___    968 AATGGTTTAAAAAAGAAAAGTAA    990
                     |||||.||.||||||||||.|||
RBAM_026410__    965 AATGGATTCAAAAAGAAAAATAA    987


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