Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04267 and RBAM_026260

See Amino acid alignment / Visit BSNT_04267 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:42
# Commandline: needle
#    -asequence dna-align/BSNT_04267___accD.1.9828.seq
#    -bsequence dna-align/RBAM_026260___accD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04267___accD-RBAM_026260___accD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04267___accD-RBAM_026260___accD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04267___accD
# 2: RBAM_026260___accD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 875
# Identity:     717/875 (81.9%)
# Similarity:   717/875 (81.9%)
# Gaps:           4/875 ( 0.5%)
# Score: 2948.0
# 
#
#=======================================

BSNT_04267___      1 TTGTTAAAGGATATATTCACGAAAAAGAAAAAGTATGCTTCCGTACCATC     50
                     ||||||||||||||||||||.|||||||||||.|||||||||||.||.||
RBAM_026260__      1 TTGTTAAAGGATATATTCACAAAAAAGAAAAAATATGCTTCCGTGCCGTC     50

BSNT_04267___     51 TGAACAAGCGAAGCACGATGTTCCGGAAGGCATTATGACAAAATGTCCTA    100
                     |||.||.||.||.||.||||||||||||||||||||||||||.||.||.|
RBAM_026260__     51 TGAGCAGGCAAAACATGATGTTCCGGAAGGCATTATGACAAAGTGCCCCA    100

BSNT_04267___    101 AGTGTAAAAAAATCATGCTCACTAAAGAGTTGGATAAAAATATGCGGGTA    150
                     |.||||||||||||||||||||.||||||||.||||||||..||||.||.
RBAM_026260__    101 AATGTAAAAAAATCATGCTCACAAAAGAGTTAGATAAAAACCTGCGCGTC    150

BSNT_04267___    151 TGCATGAACTGCGATTATCATTTCCCAATGAACGCAAAACAGCGTATCGA    200
                     |||||||||||||...|.||||||||.|||||.|||||.|||||.||.||
RBAM_026260__    151 TGCATGAACTGCGGGCACCATTTCCCGATGAATGCAAAGCAGCGCATTGA    200

BSNT_04267___    201 AAGCTTGATGGATGAAAAATCCTTTGAGGAATTTAATCAGGGAATGCTCT    250
                     ||||.|..||||||||.|.||.||.||.|||||.||.|||||||||.|.|
RBAM_026260__    201 AAGCCTCCTGGATGAAGATTCATTCGAAGAATTCAACCAGGGAATGATAT    250

BSNT_04267___    251 CGGAAAATCCGCTTGGTTTCCCGGGATATCTGGAAAAGCTTGAAAAAGAT    300
                     |.|||||.|||||.||||||||||.|||..|.|||||..|.||||||||.
RBAM_026260__    251 CTGAAAACCCGCTCGGTTTCCCGGAATACTTAGAAAAAATCGAAAAAGAC    300

BSNT_04267___    301 CGCGAGAAAACATCCTTAAACGAGGCTGTTGTGACAGGCAAGGGCACCAT    350
                     ||.|||||||||||..|.||.||.||.||.||.||.||.||.||.|||||
RBAM_026260__    301 CGTGAGAAAACATCGCTGAATGAAGCGGTGGTTACCGGAAAAGGAACCAT    350

BSNT_04267___    351 CGGCGGACACCCGGCTGTTGTCGCCGTCATGGACTCTTCATTCAGAATGG    400
                     |.|||||..||||||.||..||||..|||||||.||..|||||.||||||
RBAM_026260__    351 CAGCGGATTCCCGGCCGTGATCGCGATCATGGATTCAACATTCCGAATGG    400

BSNT_04267___    401 GCAGCATGGGTTCAGTCGTCGGTGAAAAAATCACGCTTGCGATTGAAAAA    450
                     |||||||||||||.||.|||||.|||||||||||||||||.|||||||||
RBAM_026260__    401 GCAGCATGGGTTCGGTTGTCGGCGAAAAAATCACGCTTGCAATTGAAAAA    450

BSNT_04267___    451 GCAAAAGCTGATAAAGTTCCGTTTATTATTTTTACGGCTTCAGGCGGCGC    500
                     |||||||..||.|||||.||||||||.||.|||||.|||||.|||||.||
RBAM_026260__    451 GCAAAAGAGGAAAAAGTCCCGTTTATCATCTTTACCGCTTCCGGCGGAGC    500

BSNT_04267___    501 TAGAATGCAGGAAGGCGTATTAAGTTTGATGCAGATGGCTAAGACAAGCT    550
                     ..|.||||||||.||.||.||||||.|.|||||.|||||.||||||||||
RBAM_026260__    501 ACGTATGCAGGAGGGGGTCTTAAGTCTTATGCAAATGGCAAAGACAAGCT    550

BSNT_04267___    551 CTGCGTTAAAACTGTTCAGTGAAGAACAGGGTCTTATTATTTCAGTAATG    600
                     ||||.|||||||||||||||||.||.|||||..|.||||||||.||.|||
RBAM_026260__    551 CTGCATTAAAACTGTTCAGTGAGGAGCAGGGATTGATTATTTCTGTCATG    600

BSNT_04267___    601 ACGCATCCGACTACCGGGGGCGTATCAGCAAGCTTTGCATCCCTTGGCGA    650
                     ||.||||||||.||.||.||.||||||||.||.||.||.||.||.||.||
RBAM_026260__    601 ACCCATCCGACGACAGGCGGTGTATCAGCCAGTTTCGCGTCTCTCGGTGA    650

BSNT_04267___    651 TTACAATTTCGCTGAGCCTGGCGCGCTGATCGGTTTTGCCGGAAGACGGA    700
                     |||.|||||.|||||.||.|||.|..|||||||.||||||||||||||.|
RBAM_026260__    651 TTATAATTTTGCTGAACCGGGCACCTTGATCGGATTTGCCGGAAGACGTA    700

BSNT_04267___    701 TTATTGAACAGACAATAGGAGAAAAACTGCCTGAGGACTTCCAAACGGCT    750
                     ||||||||||||||||.||.|||||||||||.||.||.|||||.|||||.
RBAM_026260__    701 TTATTGAACAGACAATCGGGGAAAAACTGCCGGAAGATTTCCAGACGGCG    750

BSNT_04267___    751 GAATTTTTATTAAAACATGGACAGCTTGATGCGGTTATTCATCGCGACGA    800
                     ||||||||||||||.||.||.||||||||||||||.|||||.||..||||
RBAM_026260__    751 GAATTTTTATTAAAGCACGGCCAGCTTGATGCGGTGATTCACCGAAACGA    800

BSNT_04267___    801 TATGAA--AAAAACGTTAGAAAATCTGCTGGATATGCATCAAACAGGAGG    848
                     .|||||  |.||||  |.|.|..|||||||||.|||||.|||||||||||
RBAM_026260__    801 CATGAAAGACAAAC--TCGCATTTCTGCTGGACATGCACCAAACAGGAGG    848

BSNT_04267___    849 TGACATTGAGTGGCTCCAAGATTAG    873
                     |||...|||||||||.|||||||||
RBAM_026260__    849 TGAGTATGAGTGGCTGCAAGATTAG    873


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04267 and RBAM_026260

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
