Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04263 and RBAM_026230
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:42
# Commandline: needle
# -asequence dna-align/BSNT_04263___pyk.1.9828.seq
# -bsequence dna-align/RBAM_026230___pyk.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04263___pyk-RBAM_026230___pyk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04263___pyk-RBAM_026230___pyk.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04263___pyk
# 2: RBAM_026230___pyk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1766
# Identity: 1408/1766 (79.7%)
# Similarity: 1408/1766 (79.7%)
# Gaps: 16/1766 ( 0.9%)
# Score: 5569.0
#
#
#=======================================
BSNT_04263___ 1 ATGAGAAAAACTAAAATTGTTTGTACCATCGGTCCGGCAAGTGAAAGTAT 50
.|||.||||||.|||||.||||||||.|||||||||||.|||||||||.|
RBAM_026230__ 1 TTGAAAAAAACAAAAATCGTTTGTACAATCGGTCCGGCCAGTGAAAGTGT 50
BSNT_04263___ 51 TGAAATGCTTACGAAATTAATGGAGTCAGGAATGAACGTGGCTCGATTAA 100
.||||||||.||.|||||.|||||..|.||.||||||||.|||||..|.|
RBAM_026230__ 51 AGAAATGCTGACAAAATTGATGGAAGCGGGTATGAACGTTGCTCGTCTGA 100
BSNT_04263___ 101 ACTTTTCTCACGGAGATTTTGAGGAACACGGTGCAAGAATTAAAAATATC 150
|.|||||.|||||.|||||.||.||.|||||.||||||||.|||||.|||
RBAM_026230__ 101 ATTTTTCACACGGTGATTTCGAAGAGCACGGCGCAAGAATCAAAAACATC 150
BSNT_04263___ 151 CGCGAAGCAAGTAAAAAACTTGGCAAGAACGTTGGAATTCTGCTTGATAC 200
.|.||||||||.|||||.||.|||||.|||||.||.|||||.||.|||||
RBAM_026230__ 151 AGAGAAGCAAGCAAAAAGCTCGGCAAAAACGTGGGGATTCTCCTCGATAC 200
BSNT_04263___ 201 AAAAGGTCCTGAAATCCGCACACATACAATGGAAAACGGCGGTATTGAGC 250
.||||||||.|||||||||||.||....|||||||||||||...||||||
RBAM_026230__ 201 GAAAGGTCCGGAAATCCGCACGCACGATATGGAAAACGGCGCGCTTGAGC 250
BSNT_04263___ 251 TTGAAACAGGC----AAAGAGCTCATTATTTCAATGGACGAGGTTGTAGG 296
|| ||||| ||.||..|.||..||||.|.|.|..||||..|.||
RBAM_026230__ 251 TT----CAGGCGGGAAATGAAATTATCGTTTCTACGAAACAGGTGCTGGG 296
BSNT_04263___ 297 AACAACAGATAAAATT-TCAGTGACATATGAAGGTTTAGTCCATGACGT- 344
||| ||....|||||| |||||..|.||||||||..|.|...|.|||||
RBAM_026230__ 297 AAC-ACTTGGAAAATTCTCAGTTTCTTATGAAGGCCTGGCAGACGACGTG 345
BSNT_04263___ 345 TGAACAAGGTTCAACGATTCTGTTAGATGACGGCCTTATCGGTCTTGAGG 394
|.|.| |||.||.|..||.|||||.||||||||..|.|||||..|.||.|
RBAM_026230__ 346 TCAGC-AGGGTCTATCATCCTGTTGGATGACGGTTTAATCGGATTGGAAG 394
BSNT_04263___ 395 TACTTGATGTAGATGCCGCTAAACGCGAAATCAAAACAAAAGTATTAAAC 444
|.||.||...|.||.|.|..||||.||||||||||||||||.|.||||||
RBAM_026230__ 395 TGCTAGAATCAAATCCGGAAAAACACGAAATCAAAACAAAAATCTTAAAC 444
BSNT_04263___ 445 AACGGAACACTCAAAAATAAAAAAGGTGTTAACGTACCGGGCGTAAGTGT 494
|.|||.||.||.||||||||||||||.||.|||||.||.|||||.||.||
RBAM_026230__ 445 AGCGGCACGCTGAAAAATAAAAAAGGCGTAAACGTTCCCGGCGTCAGCGT 494
BSNT_04263___ 495 CAATCTTCCGGGTATTACTGAAAAGGATGCGCGAGACATCGTTTTCGGTA 544
|||.|||||.||.|||||||||||.||.||...|||||||||.|||||||
RBAM_026230__ 495 CAACCTTCCCGGAATTACTGAAAAAGACGCCAAAGACATCGTATTCGGTA 544
BSNT_04263___ 545 TTGAGCAAGGAGTAGACTTCATCGCACCATCTTTCATTCGACGTTCTACG 594
|.||||||||.||.||.||||||||..|.||.||..|.||.|||||||||
RBAM_026230__ 545 TCGAGCAAGGCGTTGATTTCATCGCTGCGTCATTTGTACGCCGTTCTACG 594
BSNT_04263___ 595 GATGTGCTCGAAATCCGTGAGCTTCTTGAAGAGCACAACGC-TCAGGAAA 643
|||||.||.||||||||.||.||.|||||||||||.||||| || .||.|
RBAM_026230__ 595 GATGTCCTGGAAATCCGCGAACTGCTTGAAGAGCATAACGCGTC-TGACA 643
BSNT_04263___ 644 TTCAAATCATCCCTAAAATCGAAAACCAAGAGGGCGTTGACAACATCGAT 693
||||||||||.|||||.|||||.|||||.||.|||||.||||||.|.|||
RBAM_026230__ 644 TTCAAATCATTCCTAAGATCGAGAACCAGGAAGGCGTGGACAACCTGGAT 693
BSNT_04263___ 694 GCGATTCTCGAAGTGTCTGACGGCTTAATGGTTGCACGCGGAGACTTAGG 743
|||||.||.|||||.|||||||||||||||||.||.|||||||||.|.||
RBAM_026230__ 694 GCGATCCTGGAAGTATCTGACGGCTTAATGGTAGCGCGCGGAGACCTCGG 743
BSNT_04263___ 744 TGTGGAAATTCCAGCTGAAGAAGTGCCGCTTGTGCAAAAAGAACTGATCA 793
.||.||.|||||.||.||||||||||||||.||||||||||||.||||||
RBAM_026230__ 744 CGTAGAGATTCCGGCCGAAGAAGTGCCGCTCGTGCAAAAAGAAATGATCA 793
BSNT_04263___ 794 AAAAATGCAACGCGCTGGGCAAACCTGTTATTACAGCAACACAAATGCTT 843
||||||||||||||||.||||||||.||||||||.||.||||||||||||
RBAM_026230__ 794 AAAAATGCAACGCGCTCGGCAAACCGGTTATTACTGCGACACAAATGCTT 843
BSNT_04263___ 844 GACAGCATGCAGCGCAACCCGCGTCCGACTCGTGCGGAAGCAAGTGACGT 893
||||||||||||||||||||.||||||||.||.||.||||||||||||||
RBAM_026230__ 844 GACAGCATGCAGCGCAACCCTCGTCCGACACGCGCTGAAGCAAGTGACGT 893
BSNT_04263___ 894 TGCAAACGCGATCTTCGACGGAACAGATGCGATCATGCTTTCTGGTGAAA 943
|||.|||||.||.||||||||.||||||||.|||||||||||.|||||.|
RBAM_026230__ 894 TGCCAACGCCATTTTCGACGGCACAGATGCTATCATGCTTTCCGGTGAGA 943
BSNT_04263___ 944 CTGCTGCCGGAAGTTATCCGGTTGAAGCAGTTCAAACAATGCATAACATC 993
|.|||||.|||...|||||.||.||.||.||||||||||||..|||||||
RBAM_026230__ 944 CGGCTGCGGGACAATATCCTGTCGAGGCGGTTCAAACAATGTTTAACATC 993
BSNT_04263___ 994 GCGTCCCGTTCTGAAGAAGCGTTAAATTATAAAGAAATTCTCTCAAAACG 1043
||..|.||..|.||||||.|..|.||.||.|||||||||||.||.|||||
RBAM_026230__ 994 GCCACACGCACGGAAGAATCTCTGAACTACAAAGAAATTCTGTCTAAACG 1043
BSNT_04263___ 1044 CAGAGATCAAGTTGGCATGACAATTACAGACGCAATTGGACAATCTGTCG 1093
|||||||||.||.||||||||.|||||.||.||.||.||.|||||.||.|
RBAM_026230__ 1044 CAGAGATCAGGTCGGCATGACGATTACCGATGCGATCGGCCAATCAGTTG 1093
BSNT_04263___ 1094 CACATACGGCGATTAACCTGAATGCTGCTGCGATCGTAACGCCGACAGAA 1143
|.||.||||||||.||.||||.|||.||.||.|||||.|||||.||||||
RBAM_026230__ 1094 CGCACACGGCGATCAATCTGAGTGCGGCAGCTATCGTTACGCCTACAGAA 1143
BSNT_04263___ 1144 AGCGGCCATACAGCACGTATGATTGCAAAATACCGTCCGCAGGCTCCGAT 1193
|||||||||||.||.||||||||.||.|||||||||||||||||||||||
RBAM_026230__ 1144 AGCGGCCATACGGCGCGTATGATCGCGAAATACCGTCCGCAGGCTCCGAT 1193
BSNT_04263___ 1194 TGTTGCGGTTACTGTAAATGACTCTATTTCCAGAAAGCTTGCCCTCGTAT 1243
|||.||.|||||.||.|||||.|||.|.||..|.||.||.|.|||.||||
RBAM_026230__ 1194 TGTAGCCGTTACGGTTAATGAGTCTGTGTCACGCAAACTCGGCCTTGTAT 1243
BSNT_04263___ 1244 CTGGCGTATTCGCGGAAAGCGGCCAAAATGCGAGCTCAACAGATGAGATG 1293
..||.||||||.||..||||||||||||.||||..|||||.|||||.|||
RBAM_026230__ 1244 TCGGTGTATTCCCGTCAAGCGGCCAAAACGCGAATTCAACCGATGAAATG 1293
BSNT_04263___ 1294 CTTGAGGATGCTGTCCAAAAATCA-TTGAACAGCGGAATTGTAAAACACG 1342
|||||.||.||.||.||||||||| ||| |||||||.||.||.||||.||
RBAM_026230__ 1294 CTTGAAGACGCGGTTCAAAAATCACTTG-ACAGCGGCATCGTGAAACGCG 1342
BSNT_04263___ 1343 GCGATCTTATCGTTATTACAGCAGGCACTGTCGGTGAGTCCGGCACTACG 1392
|.|||||.||.||.|||||||||||..||||||||||.||.|||||.||.
RBAM_026230__ 1343 GTGATCTGATTGTCATTACAGCAGGTTCTGTCGGTGAATCAGGCACGACA 1392
BSNT_04263___ 1393 AACTTAATGAAGGTTCATACTGTCGGCGATATCGTCGCTAAAGGCCAAGG 1442
||..|.|||||.||.||.|||||||||...||..||||.|||||.|||||
RBAM_026230__ 1393 AATCTGATGAAAGTCCACACTGTCGGCAGCATTATCGCGAAAGGGCAAGG 1442
BSNT_04263___ 1443 CATTGGACGCAAATCAGCTTACGGTCCGGTTGTCGTTGCACAAAATGCAA 1492
|||.||.||||||||.||.|.|||||||||.||.||||||.|||||||.|
RBAM_026230__ 1443 CATCGGGCGCAAATCTGCATTCGGTCCGGTCGTTGTTGCAAAAAATGCGA 1492
BSNT_04263___ 1493 AAGAAGCTGAGCAAAAAATGACTGACGGTGCGGTACTTGTTACCAAAAGC 1542
||||||||||.|||||||||||.|||||.||||||.|.|||.||..||||
RBAM_026230__ 1493 AAGAAGCTGAACAAAAAATGACAGACGGCGCGGTATTGGTTGCCTCAAGC 1542
BSNT_04263___ 1543 ACTGACCGTGATATGATTGCATCCCTTGAAAAAGCGTCTGCTCTTATTAC 1592
||||||||.||.|||||.||.||.|||||||||||.||.||.||.||.||
RBAM_026230__ 1543 ACTGACCGCGACATGATCGCTTCACTTGAAAAAGCATCAGCGCTCATCAC 1592
BSNT_04263___ 1593 AGAAGAAGGCGGTTTGACTAGCCATGCGGCGGTAGTCGGATTAAGCCTTG 1642
.||||||||||||.||||.||||||||.||.||.|||||.||||||.|.|
RBAM_026230__ 1593 TGAAGAAGGCGGTCTGACAAGCCATGCAGCCGTTGTCGGTTTAAGCTTGG 1642
BSNT_04263___ 1643 GCATCCCGGTTATCGTGGGTCTGGAAAATGCGACATCTATTTTGACAGAT 1692
||||.|||||||||||.||||||||.||.||.||.||..||||.|||||.
RBAM_026230__ 1643 GCATTCCGGTTATCGTCGGTCTGGAGAACGCAACTTCAGTTTTAACAGAA 1692
BSNT_04263___ 1693 GGCCAGGATATTACAGTTGACGCTTCCAGAGGCGCAGTCTATCAAGGCCG 1742
||.||||.|||.||||||||||||.||.|.|||||.||.|||.|||||||
RBAM_026230__ 1693 GGACAGGTTATCACAGTTGACGCTGCCCGCGGCGCTGTGTATGAAGGCCG 1742
BSNT_04263___ 1743 TGCGAGCGTTCTTTAA 1758
.||.||||||||||||
RBAM_026230__ 1743 CGCAAGCGTTCTTTAA 1758
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