Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04247 and RBAM_026130
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Amino acid alignment /
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:40
# Commandline: needle
# -asequence dna-align/BSNT_04247___polA.1.9828.seq
# -bsequence dna-align/RBAM_026130___polA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04247___polA-RBAM_026130___polA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04247___polA-RBAM_026130___polA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04247___polA
# 2: RBAM_026130___polA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2667
# Identity: 2134/2667 (80.0%)
# Similarity: 2134/2667 (80.0%)
# Gaps: 51/2667 ( 1.9%)
# Score: 8574.0
#
#
#=======================================
BSNT_04247___ 1 ATGACGGAACGAAAAAAATTAGTGCTTGTAGACGGAAACAGTCTGGCTTA 50
|||||||||||||||||||||||||||||.|||||||||||||||||.||
RBAM_026130__ 1 ATGACGGAACGAAAAAAATTAGTGCTTGTCGACGGAAACAGTCTGGCGTA 50
BSNT_04247___ 51 CCGGGCGTTTTTTGCATTGCCGCTGTTAAGCAATGATAAAGGTGTTCATA 100
|||.||||||||||||||||||||.|||||||||||.|||||..|.||||
RBAM_026130__ 51 CCGAGCGTTTTTTGCATTGCCGCTTTTAAGCAATGAAAAAGGCATCCATA 100
BSNT_04247___ 101 CGAATGCTGTATACGGCTTTGCGATGATTTTGATGAAAATGCTTGAGGAT 150
|.|||||.||||||||.||||||||||||||.|||||||||||.||.|||
RBAM_026130__ 101 CAAATGCCGTATACGGGTTTGCGATGATTTTAATGAAAATGCTGGAAGAT 150
BSNT_04247___ 151 GAAAAACCGACGCACATGCTGGTTGCGTTTGATGCCGGGAAAACAACATT 200
|||||.|||||.|||||||||||.||.||||||||.||.|||||.||.||
RBAM_026130__ 151 GAAAAGCCGACCCACATGCTGGTGGCTTTTGATGCGGGAAAAACCACTTT 200
BSNT_04247___ 201 TCGTCACGGCACATTTAAAGAATATAAAGGCGGCAGACAGAAAACCCCGC 250
.||.|||.|.||.||||||||||||||||||||.|||||.|||||.||||
RBAM_026130__ 201 CCGCCACAGTACGTTTAAAGAATATAAAGGCGGAAGACAAAAAACGCCGC 250
BSNT_04247___ 251 CTGAGCTTTCCGAACAAATGCCGTTTATCCGCGAGCTGCTGGATGCCTAC 300
|.||||||||.|||||.||||||||.|||||||||||.||.|||||||||
RBAM_026130__ 251 CGGAGCTTTCAGAACAGATGCCGTTCATCCGCGAGCTCCTTGATGCCTAC 300
BSNT_04247___ 301 CAGATCAGCCGCTATGA----ACTGGAACAATATGAAGCGGATGATATTA 346
.|.|||||||||||.|| .||| |||||||||||||.|||||||
RBAM_026130__ 301 AAAATCAGCCGCTACGAGCTTCCTG----AATATGAAGCGGACGATATTA 346
BSNT_04247___ 347 TCGGCACACTGGCCAAATCGGCTGAAAAAGACGGATTTGAAGTAAAGGTT 396
|||||||.||.|||..|||.|||||||||||.||.||.|||||||||||.
RBAM_026130__ 347 TCGGCACCCTTGCCGTATCTGCTGAAAAAGAAGGTTTCGAAGTAAAGGTA 396
BSNT_04247___ 397 TTCTCAGGGGATAAGGATTTAACCCAGCTGGCAACGGACAAAACGACAGT 446
.|.||.|||||.|||||.|||||||||||.|||||.|..||||||||.||
RBAM_026130__ 397 GTGTCGGGGGACAAGGACTTAACCCAGCTTGCAACCGGGAAAACGACCGT 446
BSNT_04247___ 447 TGCCATTACGAGAAAGGGAATTACCGATGTTGAATTTTACACACCGGAGC 496
|||||||||||||||.||.||||||||.||.|||..||||||.|||||||
RBAM_026130__ 447 TGCCATTACGAGAAAAGGCATTACCGACGTGGAAGATTACACGCCGGAGC 496
BSNT_04247___ 497 ATGTCAAAGAGAAATATGGGCTTACGCCTGAACAAATCATTGACATGAAG 546
|.||..||||.||.||.||.||.||.|||...|||||||||||.||||||
RBAM_026130__ 497 ACGTGCAAGAAAAGTACGGTCTGACCCCTTTGCAAATCATTGATATGAAG 546
BSNT_04247___ 547 GGTCTGATGGGCGATTCCTCAGATAATATTCCGGGTGTGCCCGGCGTCGG 596
||..|.|||||.|||||.||.|||||.||.|||||.||.|||||||||||
RBAM_026130__ 547 GGATTAATGGGGGATTCATCCGATAACATACCGGGCGTCCCCGGCGTCGG 596
BSNT_04247___ 597 AGAAAAGACTGCGATTAAGCTTTTAAAACAATTTGATTCCGTTGAAAAGC 646
||||||.||.|||||||||||||||||.||.||..||||.|||||.||.|
RBAM_026130__ 597 AGAAAAAACCGCGATTAAGCTTTTAAAGCAGTTCCATTCGGTTGAGAAAC 646
BSNT_04247___ 647 TGCTGGAGTCCATTGACGAGGTGAGCGGAAAGAAATTGAAGGAAAAGCTT 696
||||.||.||||||||.||.||.||||||||.|||||.||.|||||||||
RBAM_026130__ 647 TGCTTGATTCCATTGATGAAGTCAGCGGAAAAAAATTAAAAGAAAAGCTT 696
BSNT_04247___ 697 GAGGAGTTTAAGGATCAGGCATTGATGAGCAAGGAGCTTGCGACAATTAT 746
||.||.|.||||||.||.||..||||||||||.|||||.|||||.|||||
RBAM_026130__ 697 GAAGAATATAAGGAACAAGCCCTGATGAGCAAAGAGCTGGCGACGATTAT 746
BSNT_04247___ 747 GACGGATGCTCCGATTGAGGTATCTGTTTCC--GCCC-------TGGAAT 787
|||..||||.||||||||.|| | |||| |.||.|
RBAM_026130__ 747 GACAAATGCGCCGATTGAAGT---------CAAGCCCGAAGATTTAGATT 787
BSNT_04247___ 788 ATCAAGGCTTTAATCGTGAACAGGTCATTGCCATCTTTAAAGATCTTGGC 837
|..||||.|||.|.||||||||.||..|||||||.||||||||.||.||.
RBAM_026130__ 788 ACAAAGGGTTTGACCGTGAACAAGTTGTTGCCATTTTTAAAGACCTCGGT 837
BSNT_04247___ 838 TTCAACACGCTTCTTGAACGGCTTGGAGAAGACAGTGCAGAA---GCAGA 884
||.||.|||||||||||.|||||.||.|||||.||.|..||| ||.||
RBAM_026130__ 838 TTTAATACGCTTCTTGAGCGGCTCGGTGAAGAAAGCGGCGAAACGGCGGA 887
BSNT_04247___ 885 ACAGGATCAATCGTTGGAAGACATTAATGTCAAAACAGTCACAGACG--- 931
|.|..|| ||.||||||||.|||||..||||.| ||||.|
RBAM_026130__ 888 AGAAAAT------TTTGAAGACATCAATGTTGAAACGG---CAGAAGAAA 928
BSNT_04247___ 932 TGAC--AAGCGATATATTGGTTTCTCCATCCGCATTTGTCGTTGAACAGA 979
|.|| || |||||..|.|||||.||.|||||.||.||.||||||||.|
RBAM_026130__ 929 TCACTGAA--GATATGCTCGTTTCGCCGTCCGCTTTGGTTGTTGAACAAA 976
BSNT_04247___ 980 TTGGCGATAATTATCATGAAGAGCCGATTCTCGGATTTTCGATCGTAAAT 1029
|.||.|||||.|||||.|||||.|||||.|||||.|||||.|||||.|||
RBAM_026130__ 977 TCGGTGATAACTATCACGAAGAACCGATCCTCGGCTTTTCCATCGTGAAT 1026
BSNT_04247___ 1030 GAAACGGGAGCTTATTTCATTCCGAAAGACACTGCCGTTGAGTCTGAGGT 1079
|||||.||...|||||..|||||||||||.|..|||.||.|||||||...
RBAM_026130__ 1027 GAAACAGGTCTTTATTATATTCCGAAAGAAATCGCCATTCAGTCTGAAAC 1076
BSNT_04247___ 1080 GTTTAAAGAATGGGTGGAAAATGA--CGATCAGAAGAAATGGGTCTTCGA 1127
.||||||...||||..|||.|||| |||| |||.||.|||||.|||||
RBAM_026130__ 1077 TTTTAAATCTTGGGCTGAAGATGAATCGAT--GAAAAAGTGGGTGTTCGA 1124
BSNT_04247___ 1128 CAGCAAGCGGGCTGTTGTCGCTTTGCGCTGGCAGGGCATTGAGCTGAAAG 1177
||||||.||..|.||.||||||||||||||||||||.|||||||||||.|
RBAM_026130__ 1125 CAGCAAACGTTCCGTCGTCGCTTTGCGCTGGCAGGGAATTGAGCTGAAGG 1174
BSNT_04247___ 1178 GAGCCGAGTTTGATACGCTCCTTGCGGCTTATATCATCAACCCGGGCAAT 1227
||.|.||.|||||..||||.|||||.||.||.||.||.||||||||||||
RBAM_026130__ 1175 GAACGGAATTTGACGCGCTTCTTGCTGCCTACATTATAAACCCGGGCAAT 1224
BSNT_04247___ 1228 TCATATGACGACGTTGCGAGTGTGGCTAAGGATTACGGCCTGCATATCGT 1277
||.||.|||||.||.|||||.||.||.||.||.|||||.|||.|||||||
RBAM_026130__ 1225 TCGTACGACGATGTCGCGAGCGTAGCGAAAGAATACGGGCTGAATATCGT 1274
BSNT_04247___ 1278 TTCAAGTGATGAATCAGTTTATGGAAAAGGAGCAAAACGGGCAGTGCCGT 1327
|||||..||||||.|.||.||.||||||||.|||||.||.||.||.|||.
RBAM_026130__ 1275 TTCAAAAGATGAAGCGGTATACGGAAAAGGCGCAAAGCGCGCCGTTCCGG 1324
BSNT_04247___ 1328 CAGAAGACGTACTGTCTGAGCACCTTGGCCGAAAAGCGTTAGCGATTCAA 1377
|.|||.|.|..||..|.||.||.||.|..||.|||||||..||..||.|.
RBAM_026130__ 1325 CTGAAAAAGAGCTTGCCGATCATCTCGCGCGGAAAGCGTCTGCCGTTAAC 1374
BSNT_04247___ 1378 AGCCTTCGGGAAAAGCTCGTTCAAGAGCTGGAAAACAACGACCAGCTTGA 1427
|||||.||.||.||.||..|.||.|.|||||||.|.||..|.||||||||
RBAM_026130__ 1375 AGCCTCCGTGACAAACTGCTGCACGCGCTGGAAGAAAATAATCAGCTTGA 1424
BSNT_04247___ 1428 ACTGTTTGAAGAGCTGGAAATGCCTCTTGCGCTTATTCTTGGCGAAATGG 1477
|.|.|.||||||.||.|||.|.||.||||||||.|||||.||.|||||||
RBAM_026130__ 1425 ATTATATGAAGATCTCGAACTCCCGCTTGCGCTAATTCTCGGAGAAATGG 1474
BSNT_04247___ 1478 AATCAACTGGCGTCAAGGTCGATGTTGACCGTTTAAAACGGATGGGTGAA 1527
||||||..||||||||.||.||||||||..|..|.||.||.|||||.|||
RBAM_026130__ 1475 AATCAATGGGCGTCAAAGTGGATGTTGAAAGACTGAAGCGAATGGGCGAA 1524
BSNT_04247___ 1528 GAACTGGGTGCGAAGCTGAAGGAATATGAAGAAAAAATCCATGAGATTGC 1577
||.||....||.||||||||.|||||||||||||||||||||||.||.||
RBAM_026130__ 1525 GAGCTCAAGGCAAAGCTGAAAGAATATGAAGAAAAAATCCATGACATCGC 1574
BSNT_04247___ 1578 GGGAGAGCCGTTTAACATCAATTCTCCGAAACAGCTAGGCGTCATCTTAT 1627
.||.||||||||||||||||||||.||.||||||||.||||||||..|.|
RBAM_026130__ 1575 CGGTGAGCCGTTTAACATCAATTCACCAAAACAGCTCGGCGTCATTCTGT 1624
BSNT_04247___ 1628 TTGAAAAGATCGGCCTTCCTGTC-GTAAAGAAAACGAAAACAGGCTATTC 1676
||||||||.|||||||.|| |.| |||||||||||.||||||||||||||
RBAM_026130__ 1625 TTGAAAAGCTCGGCCTGCC-GCCAGTAAAGAAAACAAAAACAGGCTATTC 1673
BSNT_04247___ 1677 TACGTCTGCCGATGTGCTTGAAAAGCTGGCTGACAAGCATGATATTGTCG 1726
.||.||.||.|||||||||||.|||||.||.|||||.||||||||.||||
RBAM_026130__ 1674 CACTTCAGCTGATGTGCTTGAGAAGCTCGCAGACAAACATGATATCGTCG 1723
BSNT_04247___ 1727 ACTATATTTTACAGTACAGACAAATTGGCAAGCTTCAATCAACATATATC 1776
...|.|||.|.||.|||||||||||.|||||.||.|||||.||.|||||.
RBAM_026130__ 1724 CGCACATTCTGCAATACAGACAAATCGGCAAACTCCAATCGACTTATATT 1773
BSNT_04247___ 1777 GAAGGGCTTTTAAAGGTGACGAGACCGGATTCGCATAAAGTGCACACGCG 1826
||||||||..|.||.||.|||.|...||||||.|||||||||||.||.||
RBAM_026130__ 1774 GAAGGGCTGCTGAAAGTCACGCGCAAGGATTCTCATAAAGTGCATACACG 1823
BSNT_04247___ 1827 ATTTAACCAGGCCTTAACGCAAACTGGCCGTCTCAGCTCGACTGATCCGA 1876
|||.||.|||||.||.||.|||||.||.||.||||||||.||.|||||||
RBAM_026130__ 1824 ATTCAATCAGGCATTGACTCAAACCGGACGCCTCAGCTCAACGGATCCGA 1873
BSNT_04247___ 1877 ACCTGCAAAACATTCCGATCAGGCTTGAGGAAGGGCGGAAAATTCGCCAA 1926
||||||||||.|||||||||.||||.|||||||||||||||||.||.||.
RBAM_026130__ 1874 ACCTGCAAAATATTCCGATCCGGCTGGAGGAAGGGCGGAAAATCCGTCAG 1923
BSNT_04247___ 1927 GCTTTTGTGCCGTCTGAAAAAGACTGGCTCATTTTTGCAGCCGATTATTC 1976
|||||.||.|||||.|||...||||||||.|||||.||.|||||||||||
RBAM_026130__ 1924 GCTTTCGTACCGTCCGAACCGGACTGGCTTATTTTCGCCGCCGATTATTC 1973
BSNT_04247___ 1977 ACAAATCGAGCTGCGGGTGCTTGCCCATATTTCAAAGGATGAAAATCTGA 2026
||||||.||..|..||||||||||.|||||||||||.|||||||||||||
RBAM_026130__ 1974 ACAAATTGAATTAAGGGTGCTTGCGCATATTTCAAAAGATGAAAATCTGA 2023
BSNT_04247___ 2027 TCGAAGCTTTTACAAATGATATGGATATTCACACGAAAACGGCAATGGAT 2076
|||||||.|||||.|||||.|||||.||||||||.|||||.||.|||||.
RBAM_026130__ 2024 TCGAAGCGTTTACGAATGACATGGACATTCACACAAAAACCGCCATGGAC 2073
BSNT_04247___ 2077 GTGTTCCATGTCGCTAAGGATGAAGTGACATCTGCGATGAGACGCCAGGC 2126
||.||.||||||..|.|.||||||||||||...||||||.|.||||||||
RBAM_026130__ 2074 GTATTTCATGTCAGTGAAGATGAAGTGACACAAGCGATGCGCCGCCAGGC 2123
BSNT_04247___ 2127 GAAAGCGGTCAACTTTGGGATTGTTTACGGGATCAGCGATTACGGTCTGT 2176
.||.||.|||||.||.||.|||||||||||.|||||.||||||||.||||
RBAM_026130__ 2124 AAAGGCCGTCAATTTCGGCATTGTTTACGGCATCAGTGATTACGGGCTGT 2173
BSNT_04247___ 2177 CACAGAACCTCGGCATTACCCGGAAGGAAGCAGGAGCATTTATCGACCGC 2226
||||.|||||||||||.||||||||.|||||.||.||.|||||.||||||
RBAM_026130__ 2174 CACAAAACCTCGGCATCACCCGGAAAGAAGCGGGCGCTTTTATAGACCGC 2223
BSNT_04247___ 2227 TATCTGGAAAGCTTCCAAGGCGTAAAAGCGTACATGGAAGATTCAGTACA 2276
|||.||||.||.||||..|||||.||.|||||.||||||||.||.||.||
RBAM_026130__ 2224 TATTTGGAGAGTTTCCCGGGCGTCAAGGCGTATATGGAAGAATCGGTGCA 2273
BSNT_04247___ 2277 GGAAGCGAAACAAAAAGGATACGTAACAACGCTTATGCATCGCCGCCGCT 2326
|||||||||.|||||||||||.||.||.||.||||||||.||||||||||
RBAM_026130__ 2274 GGAAGCGAAGCAAAAAGGATATGTCACGACACTTATGCAGCGCCGCCGCT 2323
BSNT_04247___ 2327 ACATCCCTGAGCTGACGAGCCGGAACTTTAATATCCGAAGTTTTGCGGAG 2376
|.||.|||||||||||.|||||.|||||.||..|.||.||.||||||||.
RBAM_026130__ 2324 ATATTCCTGAGCTGACCAGCCGCAACTTCAACCTGCGGAGCTTTGCGGAA 2373
BSNT_04247___ 2377 CGGACGGCCATGAATACGCCGATTCAAGGAAGCGCCGCTGATATTATCAA 2426
||||||||||||||||||||||||||.|||||||||||.||||||||.||
RBAM_026130__ 2374 CGGACGGCCATGAATACGCCGATTCAGGGAAGCGCCGCCGATATTATTAA 2423
BSNT_04247___ 2427 AAAAGCCATGATTGACATGGCTGCCAAGCTGAAAGAAAAACAGTTGAAAG 2476
|||||||||||||||||||||.||..||||||||||||||.|..||||.|
RBAM_026130__ 2424 AAAAGCCATGATTGACATGGCAGCTGAGCTGAAAGAAAAAAACCTGAAGG 2473
BSNT_04247___ 2477 CAAGGCTTCTACTTCAAGTACACGATGAATTGATTTTTGAGGCGCCAAAG 2526
|..|.||.||.|||||.||.||||||||||||||||||||.|||||.|||
RBAM_026130__ 2474 CGCGACTGCTGCTTCAGGTGCACGATGAATTGATTTTTGAAGCGCCTAAG 2523
BSNT_04247___ 2527 GAAGAAATTGAAATTCTTGAAAAGCTTGTTCCTGAAGTGATGGAGCATGC 2576
||||||||||||||..|.||.|||||.|||||||||||||||||||||||
RBAM_026130__ 2524 GAAGAAATTGAAATATTAGAGAAGCTGGTTCCTGAAGTGATGGAGCATGC 2573
BSNT_04247___ 2577 GCTTGCATTAGATGTGCCGTTAAAGGTGGACTTTGCATCAGGCCCATCTT 2626
..|.||||||||.||||||.|.||||.|||.|.|||.|||||.||.||||
RBAM_026130__ 2574 TTTGGCATTAGACGTGCCGCTGAAGGCGGATTATGCTTCAGGGCCGTCTT 2623
BSNT_04247___ 2627 GGTACGATGCGAAATAA 2643
||||||||||.||||||
RBAM_026130__ 2624 GGTACGATGCAAAATAA 2640
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