Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04246 and RBAM_026120

See Amino acid alignment / Visit BSNT_04246 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:40
# Commandline: needle
#    -asequence dna-align/BSNT_04246___mutM.1.9828.seq
#    -bsequence dna-align/RBAM_026120___mutM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04246___mutM-RBAM_026120___mutM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04246___mutM-RBAM_026120___mutM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04246___mutM
# 2: RBAM_026120___mutM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 853
# Identity:     669/853 (78.4%)
# Similarity:   669/853 (78.4%)
# Gaps:          32/853 ( 3.8%)
# Score: 2607.5
# 
#
#=======================================

BSNT_04246___      1 ATGGATGTGCCGGAATTACCAGAGGTTGAGACGGTCCGGCGCACTCTGAC     50
                     |||..||||||||||||||||||.|||||.||||||||||||||||||||
RBAM_026120__      1 ATGATTGTGCCGGAATTACCAGAAGTTGAAACGGTCCGGCGCACTCTGAC     50

BSNT_04246___     51 CGGGCTTGTAAAGGGAAAAACAATCAAATCGGTAGAGATCAGATGGCCGA    100
                     |||.|||||.|||||.|||||.||..||||||..||.|||||||||||||
RBAM_026120__     51 CGGTCTTGTGAAGGGGAAAACGATTGAATCGGCGGATATCAGATGGCCGA    100

BSNT_04246___    101 ATATCATCAAACGGCCTGCCGAACCGGAGGAATTTGCGCGAAAACTAGCA    150
                     |||||||||||...||.|||||.|||||||||||.|||||..|..|.|||
RBAM_026120__    101 ATATCATCAAAAAACCCGCCGAGCCGGAGGAATTCGCGCGGCAGATTGCA    150

BSNT_04246___    151 GGAGAAACGATACAGTCCATCGGAAGACGGGGAAAGTTTTTACTGTTTCA    200
                     ||||||||.||.|..||||||||||||.|||||||||||||.||.||.||
RBAM_026120__    151 GGAGAAACAATCCGATCCATCGGAAGAAGGGGAAAGTTTTTGCTTTTCCA    200

BSNT_04246___    201 TTTAGATCATTATGTTATGGTTTCTCACCTTCGAATGGAAGGAAAATACG    250
                     |.|.|||||||||||.|||||.||.|||||.||.|||||.||.|||||||
RBAM_026120__    201 TCTGGATCATTATGTCATGGTGTCCCACCTGCGGATGGAGGGGAAATACG    250

BSNT_04246___    251 GTCTTCATCAAGCCGAGGAGCCTGACGATAAACACGTGCATGTCAT-ATT    299
                     ||||||||||.|||||.|||||||||||||||||.|||||.|||.| .||
RBAM_026120__    251 GTCTTCATCAGGCCGATGAGCCTGACGATAAACATGTGCACGTCGTGTTT    300

BSNT_04246___    300 CACGATGACGGATGGAACCCAGCTCCGGTACAGGGATGTGCGGAAATTTG    349
                     ||| ||||||||.|||||.||||||||.|||.|||||||.||||||||.|
RBAM_026120__    301 CAC-ATGACGGACGGAACACAGCTCCGCTACCGGGATGTCCGGAAATTCG    349

BSNT_04246___    350 GAACCATGCACTTATTTAAACCGGGAGAAGAAGCGGGC-GA--GC--TCC    394
                     |.||.|||||.||.|||...||||||||.|||     | ||  ||  |.|
RBAM_026120__    350 GCACGATGCATTTGTTTGCGCCGGGAGAGGAA-----CAGAATGCATTAC    394

BSNT_04246___    395 CGCTTTCTCAGTTAGGTCCGGAGCCGGATGCAGAAGAATTTACAAGTGCG    444
                     |||||||.|||.|.||.||.||.||.||||..||||.||||||...|||.
RBAM_026120__    395 CGCTTTCACAGCTCGGGCCCGAACCCGATGATGAAGCATTTACCGCTGCT    444

BSNT_04246___    445 TATTTAAAAGAACGGCTTGCGAAAACAAACCGCGCTGTCAAAACTGCCCT    494
                     |||||||||||.||||||||.|||||.||||||||.||.|||||.|||||
RBAM_026120__    445 TATTTAAAAGAGCGGCTTGCAAAAACGAACCGCGCGGTGAAAACAGCCCT    494

BSNT_04246___    495 ACTGGATCAAAAAACGGTAGTTGGACTCGGGAACATTTATGTGGATGAGG    544
                     .||.||.||||||.||||.||.||.|||||.||.||||||||.|||||.|
RBAM_026120__    495 GCTCGACCAAAAAGCGGTCGTCGGCCTCGGCAATATTTATGTCGATGAAG    544

BSNT_04246___    545 CTCTTTTCAGAGCAGGTGTCCATCCCGAGACAAAAGCAAATCAAT-TATC    593
                     ||.|.|||.|.||..||.|.|||||.|||||||||||.|| ||.| |.||
RBAM_026120__    545 CTTTATTCCGGGCGCGTATTCATCCTGAGACAAAAGCGAA-CAGTCTGTC    593

BSNT_04246___    594 AGATAAAAC-----AATCAAAACCCTTCACGCTGGAATCAAAAACACTCT    638
                     ||     ||     .||.|||||.|||||..|.|.|||.|||.||||.||
RBAM_026120__    594 AG-----ACGGGCAGATAAAAACGCTTCATACAGAAATTAAAGACACCCT    638

BSNT_04246___    639 GCAGGAGGCGATTGATGCGGGCGGAAGCACAGTCCGTTCATATATCAACT    688
                     .|||||.||||||||.||||||||.|||||.|||||.||.||||||||.|
RBAM_026120__    639 TCAGGAAGCGATTGACGCGGGCGGGAGCACCGTCCGGTCTTATATCAATT    688

BSNT_04246___    689 CCCAAGGGGAAATCGGAATGTTCCAGCTGCAGCATTTTGTGTACGGAAAA    738
                     |.||||||||.|||||||||||.|||||..|.||||..||.|||||.|||
RBAM_026120__    689 CTCAAGGGGAGATCGGAATGTTTCAGCTCAAACATTACGTATACGGCAAA    738

BSNT_04246___    739 AAAGACGAGCCATGCAAAAATTGCGGAACGATGATTTCGAAAATTGTCGT    788
                     ||.||.||.||.|||||||..|||||.|||||||||||.|||||.||.||
RBAM_026120__    739 AAGGATGAACCGTGCAAAACGTGCGGCACGATGATTTCTAAAATCGTGGT    788

BSNT_04246___    789 TGGAGGAAGAGGCACGCATTTTTGCGCAAAGTGCCAGACAAAAAAGT---    835
                     .||.|||||.||.||||||||||||||....|||||   ||||||.|   
RBAM_026120__    789 CGGCGGAAGGGGTACGCATTTTTGCGCCCGCTGCCA---AAAAAAATCAT    835

BSNT_04246___    836 -AG    837
                      | 
RBAM_026120__    836 GA-    837


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04246 and RBAM_026120

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
