Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04240 and RBAM_026080
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:39
# Commandline: needle
# -asequence dna-align/BSNT_04240___ytbD.1.9828.seq
# -bsequence dna-align/RBAM_026080___ytbD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04240___ytbD-RBAM_026080___ytbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04240___ytbD-RBAM_026080___ytbD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04240___ytbD
# 2: RBAM_026080___ytbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1230
# Identity: 886/1230 (72.0%)
# Similarity: 886/1230 (72.0%)
# Gaps: 69/1230 ( 5.6%)
# Score: 3115.0
#
#
#=======================================
BSNT_04240___ 1 ATGACTTCA----GCCAATAAAAGCAATATTCCTGCACTACTGGCTTTGG 46
|||.||||| ||| |||||.||.|.||.||.||.|||||.||.|
RBAM_026080__ 1 ATGTCTTCACATCGCC----AAAGCTATTTACCAGCGCTGCTGGCATTAG 46
BSNT_04240___ 47 CCGTAAGTGCATTCGCAATAGGGACAACTGAATTTATCAGTGTCGGCCTT 96
||||.||.||.||.||.||.||.|||||.|||||||||||.|||||.||.
RBAM_026080__ 47 CCGTCAGCGCTTTTGCGATCGGCACAACCGAATTTATCAGCGTCGGGCTG 96
BSNT_04240___ 97 TTGCCGCTCATTGCTGATGACCTGGATATTCCCGTCACGACAGCAGGATT 146
.|||||||.||..||.|.||.|||.||||.||.||.||.||.||.|||.|
RBAM_026080__ 97 CTGCCGCTTATATCTCAAGATCTGCATATACCTGTGACAACGGCGGGACT 146
BSNT_04240___ 147 GACCGTTTCCCTTTATGCGCTCGGCGTTACATTTGGGGCACCTATATTAA 196
.|||||||||.|.|||||.||.|||||.|||||.||.||.||..|.||||
RBAM_026080__ 147 TACCGTTTCCATGTATGCTCTGGGCGTGACATTCGGCGCGCCGGTTTTAA 196
BSNT_04240___ 197 CTTCATTGACCTCAAGCATGTCACGTAAGACACTATTGCTTTGGATCATG 246
|.||..|.||.||..|||||||.||.||.||.||..||||.|||.|.|||
RBAM_026080__ 197 CGTCTCTCACATCCGGCATGTCGCGGAAAACGCTGCTGCTCTGGGTGATG 246
BSNT_04240___ 247 TTTATTTTTATTGCCGGTAATACGATGGCAGCAACCGCTTCAAGCATCGG 296
||.||||||||.|||||.|||||..|.|||||.|.||||||....|||||
RBAM_026080__ 247 TTAATTTTTATCGCCGGAAATACACTCGCAGCGAGCGCTTCCTCAATCGG 296
BSNT_04240___ 297 GATTTTACTAGCAGCACGTGTGATATCGGCATTTTCGCACGGTGTGTTTA 346
..|.|||||.||.|||||.||.||.|||||.|||||.|||||..|.||.|
RBAM_026080__ 297 CGTCTTACTGGCGGCACGGGTCATTTCGGCTTTTTCCCACGGCATTTTCA 346
BSNT_04240___ 347 TGTCGATCGGTTCGACAATCGCAGCGGATATTGTCCCGGAGGATAAAAGG 396
||||.|||||..|.||||||||.||..||||.||.||||||.|||||||.
RBAM_026080__ 347 TGTCAATCGGGGCAACAATCGCCGCCAATATCGTGCCGGAGCATAAAAGA 396
BSNT_04240___ 397 GCTAGCGCGATTTCAATTATGTTTACTGGCCTCACTGTGGCAACTGTAAC 446
||.|||||||||||.||.|||||.||.||.||.||.|||||.||.||.||
RBAM_026080__ 397 GCAAGCGCGATTTCCATCATGTTCACGGGGCTGACGGTGGCTACGGTGAC 446
BSNT_04240___ 447 CGGAGTTCCTTTTGGGACATTTATCGGCCAGCAGTTCGGCTGGCGTTTCG 496
|||.|||||.||.||.||.|.|.||||||||||.|||||.|||.|..|||
RBAM_026080__ 447 CGGCGTTCCGTTCGGCACCTATCTCGGCCAGCAATTCGGATGGAGAATCG 496
BSNT_04240___ 497 CCTTTATGGTCATTATCGCCGTCGGAATCATTGCTTTCATTACAAATG-G 545
|.|||...||||||.|.||.||.||||||||.||.|||.|.|||||.| |
RBAM_026080__ 497 CATTTGCCGTCATTGTGGCGGTAGGAATCATCGCATTCCTCACAAACGCG 546
BSNT_04240___ 546 CATTCTTGTACCGTCCAAATTACGAAAAGGGACGAAAACAACG-AT---- 590
| |.||.||.|||||..|.||.||.|||||||||||||| || ||
RBAM_026080__ 547 C-TCCTCGTTCCGTCGCATTTGCGCAAAGGGACGAAAAC--CGCATTTTC 593
BSNT_04240___ 591 ---GCGGGATCAATTGAAGCTTGTGACAAACAGCCGGTTATTGCTTTTAT 637
||.|| |.||.||.||.||||||.||||||||||||||||||
RBAM_026080__ 594 CGAGCAGG------TCAAACTCGTCACAAACGGCCGGTTATTGCTTTTAT 637
BSNT_04240___ 638 TTGTCATTACAGCGCTTGGATACGGAGGAACATTCGTTGTGTTCACGTAT 687
||.|||||||.|||.|.||.|||||.|||||.||.||.|||||.||||||
RBAM_026080__ 638 TTATCATTACCGCGTTAGGCTACGGCGGAACGTTTGTCGTGTTTACGTAT 687
BSNT_04240___ 688 CTGTCTCCCCTGCTTCAGGAAGTAACAGGCTT---CAAAGCCGGGACTGT 734
.|.|||||.||.||||||||.|||||.||.|| .||| |..||.||
RBAM_026080__ 688 TTATCTCCGCTTCTTCAGGAGGTAACCGGTTTTCAGAAA---GAAACCGT 734
BSNT_04240___ 735 TGCAGTGATTCTGCTCGGATACGGAATAGCTATTGCTATCGGCAATATGA 784
.||.|..||.|||||||..||||||||.||.|||||.|||||.||.||||
RBAM_026080__ 735 CGCGGCCATCCTGCTCGTTTACGGAATTGCGATTGCCATCGGAAACATGA 784
BSNT_04240___ 785 TTGGCGGAAAGC----TGTCAAACCGAAATCCGATTGCCGCTTTATTCTA 830
|||||| || |.|||||||||||||||.|....||.||.||.||
RBAM_026080__ 785 TTGGCG----GCCGTTTATCAAACCGAAATCCGCTGAAAGCCTTGTTTTA 830
BSNT_04240___ 831 TATGTTTATCGTACAAGCAATTGTTCTATTCGTACTGACATTTACAGCCC 880
||||||.||.||.||.||...|||.||.||.||.|||||.|||||.||.|
RBAM_026080__ 831 TATGTTCATTGTCCAGGCTGCTGTGCTGTTTGTTCTGACTTTTACCGCGC 880
BSNT_04240___ 881 CGTATCAAGCAGCAGGGCTCATTACCATTCTCTGTATGGGATTGCTGGCC 930
|||.|.||.||||.|||||.||.||||||.|.|..|||||..||.||||.
RBAM_026080__ 881 CGTTTAAAACAGCCGGGCTGATCACCATTATTTTCATGGGGCTGTTGGCG 930
BSNT_04240___ 931 TTTATGAACGTGCCCGGCCTTCAGGTGTATGTCGTCATGCTGGCTGAGCG 980
||||||||.|||||.||.||||||||.||||||||.||||||..|||.||
RBAM_026080__ 931 TTTATGAATGTGCCGGGGCTTCAGGTATATGTCGTGATGCTGAGTGAACG 980
BSNT_04240___ 981 TTTTGTCCCGAGTGCAGTTGACGTCGCATCCGCGATGAATATCGCTGCCT 1030
|||||..||.||.||.|||||....|||||.||..|.||||||||.||.|
RBAM_026080__ 981 TTTTGCGCCAAGCGCCGTTGATACAGCATCAGCCTTAAATATCGCGGCAT 1030
BSNT_04240___ 1031 TTAATGCAGGGATCGCGCTTGGGTCATACCTT---GGCGGTGTGATCACC 1077
|||||||.||.||||||.|.||.||.| || |||||..|.||.||.
RBAM_026080__ 1031 TTAATGCCGGAATCGCGATCGGCTCGT---TTGCCGGCGGAATCATTACA 1077
BSNT_04240___ 1078 GATTCAATCGGATTGATTCATACCGCTTGGATAGGCGGATTAATGGTGGT 1127
||.|||||||||.|.|||||||||||||||||.||.|...|.||||||.|
RBAM_026080__ 1078 GACTCAATCGGAATCATTCATACCGCTTGGATCGGGGCGCTGATGGTGCT 1127
BSNT_04240___ 1128 CGGTGCAGTCATTTTAACAGGCTGGAGCCG----CTTGATGGAAAAACGA 1173
|.|.||.|||.|.|||||.||.||||||.| ||| |||||.||.
RBAM_026080__ 1128 CAGCGCGGTCGTATTAACCGGATGGAGCAGGAAACTT----GAAAAGCGG 1173
BSNT_04240___ 1174 GATCGGC------------AGGAAGCCTGA 1191
|||| || ||||.| |||
RBAM_026080__ 1174 GATC-GCACTGTCCTTGAAAGGAGG--TGA 1200
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