Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04235 and RBAM_026040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:39
# Commandline: needle
# -asequence dna-align/BSNT_04235___nrdR.1.9828.seq
# -bsequence dna-align/RBAM_026040___nrdR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04235___nrdR-RBAM_026040___nrdR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04235___nrdR-RBAM_026040___nrdR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04235___nrdR
# 2: RBAM_026040___nrdR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 460
# Identity: 369/460 (80.2%)
# Similarity: 369/460 (80.2%)
# Gaps: 2/460 ( 0.4%)
# Score: 1469.0
#
#
#=======================================
BSNT_04235___ 1 TTGAAATGTCCTTCATGCCAGCATAACGGAACACGAGTCCTTGATTCACG 50
|||||||||||||||||||||||.|||||..|.||.||.|||||||||||
RBAM_026040__ 1 TTGAAATGTCCTTCATGCCAGCACAACGGTTCCCGCGTACTTGATTCACG 50
BSNT_04235___ 51 GCCTGTGGATGACGGAAAGTCGATTCGCCGAAGACGCGAGTGCGAATCCT 100
|||||.|||.||.||.||.||.||.|||.||||.||.||.||||||.|||
RBAM_026040__ 51 GCCTGCGGACGAAGGGAAATCAATCCGCAGAAGGCGGGAATGCGAAGCCT 100
BSNT_04235___ 101 GCCACTACCGGTTTACGACCTTTGAGAAAGTGGAGGAAACCCCGCTCATC 150
||||.|||||.||.||.||.||||||||..|.||.||.|..||.||.|||
RBAM_026040__ 101 GCCATTACCGCTTCACTACATTTGAGAAGTTTGAAGAGATGCCTCTGATC 150
BSNT_04235___ 151 GTTGTGAAAAAAGAAGGTGTGCGTGAGGAATTCAGCAGAGAAAAAATGCT 200
||.||||||||||||||.||.||.||.|||||||||.|.|||||||||||
RBAM_026040__ 151 GTCGTGAAAAAAGAAGGCGTCCGGGAAGAATTCAGCCGTGAAAAAATGCT 200
BSNT_04235___ 201 GCGCGGCCTCATAAAAGCATGTGGAAAAAGGCCTGTTTCACTCAAAACGC 250
||||||..|.||.|||||.||||.|||||||||.|||.|..|.|||||..
RBAM_026040__ 201 GCGCGGGTTAATTAAAGCTTGTGAAAAAAGGCCCGTTCCTTTAAAAACAT 250
BSNT_04235___ 251 TTGAAGACATGTGCTTTGATATTGAAAAAGAACTTCGCAATCAAGGCTG- 299
|.|||||||||||||||||.|||||||||||.||..|.||.||||| ||
RBAM_026040__ 251 TGGAAGACATGTGCTTTGACATTGAAAAAGAGCTGAGAAACCAAGG-TGT 299
BSNT_04235___ 300 CTCCGAGGTGAAGAGTGAGCTCGTCGGAGAAATGGTCATGGACCGGCTGG 349
.||.||.||.||.||.||.||.||||||||||||||.||||||||.||||
RBAM_026040__ 300 ATCTGAAGTCAAAAGCGAACTTGTCGGAGAAATGGTAATGGACCGTCTGG 349
BSNT_04235___ 350 CTAAGATTGACGAAGTCGCATATGTGCGGTTCGCGTCCGTCTATCGGCAG 399
|.||.||.||.||.||..|.|||||.||.||.||.||||||||.||||||
RBAM_026040__ 350 CGAAAATCGATGAGGTGTCTTATGTCCGCTTTGCCTCCGTCTACCGGCAG 399
BSNT_04235___ 400 TTTAAAGATATAAACGTCTTTATCGATGAATTAAAAGACTTAATAAAGAA 449
|||||.|||||||||||.||||||||||||||.|||||.|||||||||||
RBAM_026040__ 400 TTTAAGGATATAAACGTGTTTATCGATGAATTGAAAGATTTAATAAAGAA 449
BSNT_04235___ 450 AGAGCGTTAA 459
|||.||.|.|
RBAM_026040__ 450 AGAACGCTGA 459
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