Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04234 and RBAM_026030

See Amino acid alignment / Visit BSNT_04234 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:39
# Commandline: needle
#    -asequence dna-align/BSNT_04234___dnaB.1.9828.seq
#    -bsequence dna-align/RBAM_026030___dnaB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04234___dnaB-RBAM_026030___dnaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04234___dnaB-RBAM_026030___dnaB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04234___dnaB
# 2: RBAM_026030___dnaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1455
# Identity:    1101/1455 (75.7%)
# Similarity:  1101/1455 (75.7%)
# Gaps:          81/1455 ( 5.6%)
# Score: 4144.5
# 
#
#=======================================

BSNT_04234___      1 ATGGCTGACTATTGGAAAGATGTACTGCCTGTAGACCCGTATGTGGTTAA     50
                     |||||||||||||||||.||.|||.||||||||||.||.|||..|||.||
RBAM_026030__      1 ATGGCTGACTATTGGAATGACGTATTGCCTGTAGATCCTTATACGGTCAA     50

BSNT_04234___     51 AAGCAGATCGATGCTGCAGGATATTGACAGACAAATTATTACACAACTGT    100
                     ||||.|.|||.|.||.||||||.|.||||||||..||.|.|||||.||||
RBAM_026030__     51 AAGCCGTTCGCTTCTTCAGGATGTCGACAGACAGGTTTTGACACATCTGT    100

BSNT_04234___    101 ACCAGCCCTTAATCGGCCCTGTTGCATTCTCTCTTTATATGACATTGTGG    150
                     |||||||..|.|||||..||.||||||||||.|||||||||||.||.|||
RBAM_026030__    101 ACCAGCCGCTGATCGGTTCTTTTGCATTCTCCCTTTATATGACCTTATGG    150

BSNT_04234___    151 GGAGAGCTTGAACAAAACCGTCTGTGGGGCGGAGAGTCCACACATAGACA    200
                     ||.||||||||.||.|||||..|||||||.|..||.|||||.||.||.||
RBAM_026030__    151 GGGGAGCTTGAGCAGAACCGCTTGTGGGGAGCGGAATCCACGCACAGGCA    200

BSNT_04234___    201 GCTGATGGGGATGACACAGTCCAACTTAAAAACGATCCATCAGGAACAGG    250
                     |||||||||.||||..|||||.||.|||||||.|||.|||||.|||||||
RBAM_026030__    201 GCTGATGGGCATGATGCAGTCAAATTTAAAAAAGATTCATCATGAACAGG    250

BSNT_04234___    251 GGAAGCTCGAGGGCATCGGATTGCTGAAAGTATATATGAAAGAATCCGAG    300
                     |.|||||.||.||.|||||..||||||||||.|||||....||.||||||
RBAM_026030__    251 GAAAGCTTGAAGGAATCGGGCTGCTGAAAGTGTATATCCGGGAGTCCGAG    300

BSNT_04234___    301 CGGCAGGAGCGCCTCTTTATATATGAACTCCTTCCGCCGCTCAGACCAAA    350
                     |.|.|.|||||..|.|||||.|||||.||.||.||.||.||||||||.||
RBAM_026030__    301 CAGAAAGAGCGGATGTTTATTTATGAGCTGCTGCCCCCACTCAGACCGAA    350

BSNT_04234___    351 TGAATTTTTTGAAGACGGAATGCTGAATGTTTTTCTGTATAATAGAGTCG    400
                     |||.||||||||||||||.|||||||||||.|||||.|||||.|||||||
RBAM_026030__    351 TGATTTTTTTGAAGACGGCATGCTGAATGTCTTTCTTTATAACAGAGTCG    400

BSNT_04234___    401 GAAAAACGAAATATCAGCAATTAAAACAATTTTTTACGCACCCGGCTATT    450
                     |.|||||||||||.|||||..|.|.||||||||..|||||.||      |
RBAM_026030__    401 GTAAAACGAAATACCAGCAGCTGAGACAATTTTACACGCATCC------T    444

BSNT_04234___    451 TCAGAAGATGCG------AAGGACATTACGCGGCCGTTTAATCACGCGTT    494
                     ||.|..|..|||      |.|||.|||||.||.||||||||||||||.||
RBAM_026030__    445 TCCGTCGGCGCGGGCGCAAGGGAAATTACCCGTCCGTTTAATCACGCCTT    494

BSNT_04234___    495 TGAATCGCTGCAGCCGAGTGAATGGAAGCTCACATCTGATATGGAGGAAA    544
                     ||..||..|.|||||||||||||||||..|.||..||||||||||.||..
RBAM_026030__    495 TGCCTCTTTTCAGCCGAGTGAATGGAAAATGACGCCTGATATGGAAGAGG    544

BSNT_04234___    545 CGGT-AAGACTTGCCGAGGGGACCGAGTAT------ACTTCTGTCGGACA    587
                     ||.| ||| ||..|||||      ||.|||      .|.|||||||||||
RBAM_026030__    545 CGATGAAG-CTCCCCGAG------GACTATGAGACGGCGTCTGTCGGACA    587

BSNT_04234___    588 GTCTCCGTCCTACACCATAACGGAGGATGTGTTTGATTTTGATTTGTTTT    637
                     ..|.||.|||||.||..|.||||||||.||.|||||||||||..|.||..
RBAM_026030__    588 AGCGCCTTCCTATACGGTGACGGAGGAAGTATTTGATTTTGAGCTTTTCA    637

BSNT_04234___    638 TAGCGGGACTTTCTGAGACGATGATACCGAGAAAAGCGATGACCCAGCAG    687
                     |.||||||||.||.||.||||||||||||.|.|||.|.||.||.|||.|.
RBAM_026030__    638 TGGCGGGACTGTCAGAAACGATGATACCGCGTAAATCAATCACGCAGGAC    687

BSNT_04234___    688 GTGCGGGACACAATCAAAAAGCTTTCTTATCTGTACGGAATTGACCCTTT    737
                     ||||||||.|..||.|||||||||||.|||.|.||||||||.||.|||.|
RBAM_026030__    688 GTGCGGGAGAGCATTAAAAAGCTTTCATATTTATACGGAATAGATCCTAT    737

BSNT_04234___    738 GCAAATGCAAAATGTTGTGATGAGCGCAATTGATGAGC--GTGACGTCAT    785
                     ....|||||..|.||.||.||||.|||||||.||||.|  |..|||  ||
RBAM_026030__    738 CTCCATGCAGCACGTCGTCATGACCGCAATTAATGAACAGGATACG--AT    785

BSNT_04234___    786 TACGACGGAGGCATTAAGAAAAGCGGCGAGCGACTGGTATCAAATTGAAA    835
                     .|||.|.||.||..|.||.||||||||.|||||||||||.||||||||||
RBAM_026030__    786 AACGGCCGAAGCGCTGAGGAAAGCGGCCAGCGACTGGTACCAAATTGAAA    835

BSNT_04234___    836 GAAACGGACAGCTGCCCGATTTGGTGGAAAAAACACAGCCGGTGCATCTG    885
                     |||.|||..||||.||.||..||.|.||.|||||||||||.|| ||.|| 
RBAM_026030__    836 GAAGCGGTAAGCTTCCGGAACTGATTGATAAAACACAGCCTGT-CACCT-    883

BSNT_04234___    886 CGTGAAGGCGA-AAAACCGG-CAGAA---GACGATTCTCTGGATGG-GAA    929
                       |||    || |||||||| |.|||   ||||||||..||.|.|| |||
RBAM_026030__    884 --TGA----GAGAAAACCGGACGGAAAAGGACGATTCATTGAACGGCGAA    927

BSNT_04234___    930 GCTGATTGCATTGCTGGAGGCGATTTCCCCGAAGAAGCTTCTGCAGGACA    979
                      ||.||.|||..|||.|||.|.||.||.||||..||||||||.|||||||
RBAM_026030__    928 -CTCATCGCACAGCTTGAGACCATATCACCGAGAAAGCTTCTTCAGGACA    976

BSNT_04234___    980 TTGCTGACGGAACAGAGCCGTCAAAAGCTGATCTGAAGATCATAGAAGAA   1029
                     ||||.|||||.||.||||||||||||||.||..||.||||.||.|..||.
RBAM_026030__    977 TTGCGGACGGGACCGAGCCGTCAAAAGCCGACTTGCAGATTATCGCCGAT   1026

BSNT_04234___   1030 ATTATGTTCGAACAGAAGCTCGAGCCAGGCGTCACAAATGTGTTAATTTA   1079
                     ||||||||||||||.|||||.|||||.||||||||.||||||.|.|||||
RBAM_026030__   1027 ATTATGTTCGAACAAAAGCTTGAGCCCGGCGTCACCAATGTGCTGATTTA   1076

BSNT_04234___   1080 TTATGTCATGCTGAAAACCGACATGAAGCTGTCCAAAAACTATATCCAAA   1129
                     ||||||||||||||||||.||.||||||||||||||||||||||||||||
RBAM_026030__   1077 TTATGTCATGCTGAAAACGGATATGAAGCTGTCCAAAAACTATATCCAAA   1126

BSNT_04234___   1130 AAATCGCTTCGCATTGGGCACGCAAAAAGGTAAAAACGGTCAGGGAAGCG   1179
                     |||||||..|.||.|||||..|.|||||.||.||||||||..|||||||.
RBAM_026030__   1127 AAATCGCCGCCCACTGGGCCAGAAAAAAAGTCAAAACGGTACGGGAAGCA   1176

BSNT_04234___   1180 ATGAAGCTCGCAATAGAAGAAAACCGCCAGTATCTTGAATGGGCTGAAGG   1229
                     ||||||||||||||||||||..||.|.||.||||||||.|||||.||.||
RBAM_026030__   1177 ATGAAGCTCGCAATAGAAGAGCACAGGCAATATCTTGATTGGGCGGACGG   1226

BSNT_04234___   1230 AAAAACAAAGTCTTCG------------AAACGAAACCAAAAAGTGATTC   1267
                     .||||||||  |..||            |||  |||||        .|.|
RBAM_026030__   1227 CAAAACAAA--CGGCGCGGCGCGCGGTAAAA--AAACC--------GTCC   1264

BSNT_04234___   1268 GTGAAGAAAAGCTTCCTGATTGGATGACAGAAAAGGAAACAGCGTCTGAT   1317
                     |.||||||||||..|||||||||||||.||||.|.|||||.|.|      
RBAM_026030__   1265 GGGAAGAAAAGCGCCCTGATTGGATGAAAGAAGAAGAAACCGGG------   1308

BSNT_04234___   1318 TCAGAATC-CGGACAGCAGAAGCTGCATC--CGCAGGATTTGGAAGAACA   1364
                      .||||.| .|.|||||.|  |||...||  ||||||||.|.||||||||
RBAM_026030__   1309 -AAGAAACAAGAACAGCCG--GCTCTTTCCGCGCAGGATCTTGAAGAACA   1355

BSNT_04234___   1365 GAAGAAAAAGATGATGGAAGAAATGCAAAAACTGAAAAAATACTCTGCCT   1414
                     |||||||||.|||||||||||||||.||||||||||||||||||||||||
RBAM_026030__   1356 GAAGAAAAAAATGATGGAAGAAATGAAAAAACTGAAAAAATACTCTGCCT   1405

BSNT_04234___   1415 ATTAA   1419
                     |||.|
RBAM_026030__   1406 ATTGA   1410


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