Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04227 and RBAM_026000

See Amino acid alignment / Visit BSNT_04227 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:39
# Commandline: needle
#    -asequence dna-align/BSNT_04227___ytxC.1.9828.seq
#    -bsequence dna-align/RBAM_026000___ytxC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04227___ytxC-RBAM_026000___ytxC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04227___ytxC-RBAM_026000___ytxC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04227___ytxC
# 2: RBAM_026000___ytxC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 870
# Identity:     642/870 (73.8%)
# Similarity:   642/870 (73.8%)
# Gaps:          63/870 ( 7.2%)
# Score: 2338.5
# 
#
#=======================================

BSNT_04227___      1 ATGCTTGAAATAATCTTTGAAGATGACCATGATGCAGCCGCTTTTTTACA     50
                     |||||||||.|.|||||||||||||||||.|||.|.||||||||||||||
RBAM_026000__      1 ATGCTTGAAGTGATCTTTGAAGATGACCACGATACCGCCGCTTTTTTACA     50

BSNT_04227___     51 TCTCATTCAGCATTCGGACGATCGGA-ACAATATCATTGTCCATGAAGGC     99
                     ||||||||||||.||||||||.|||| || ||.|.|||||||.|||||.|
RBAM_026000__     51 TCTCATTCAGCAATCGGACGACCGGAGAC-ATTTTATTGTCCGTGAAGAC     99

BSNT_04227___    100 ATACGAAAAATCGGGAT---------TGAAAAAGCGAATCCGGCTTTTCC    140
                     |||..||||.||||.||         |||||         ||||||||..
RBAM_026000__    100 ATAAAAAAAGTCGGAATCGCAAGGTCTGAAA---------CGGCTTTTTG    140

BSNT_04227___    141 TATTCAGCGTTTTATGGAGCCGATTCTGGTCAAATTTTTTTTGGAATGCA    190
                     ..|||||||.|||||.||||||||.||.||||..||||||||||||||||
RBAM_026000__    141 CGTTCAGCGCTTTATTGAGCCGATACTTGTCAGGTTTTTTTTGGAATGCA    190

BSNT_04227___    191 AAGAAGACGAGCATATGCTGTCATTGATTGAGGAAACTTATTGTTTCACG    240
                     |||||||||||||||||||.||..|.||||||||..|.||.||.|||||.
RBAM_026000__    191 AAGAAGACGAGCATATGCTTTCGCTTATTGAGGACGCATACTGCTTCACC    240

BSNT_04227___    241 GACCAGGATGAACAGCAGCAAATCCTTCAGCTCGCACACAGTATTATTGA    290
                     ||.||||||||||||||||||||.||||||||.||||||||.|||||.||
RBAM_026000__    241 GATCAGGATGAACAGCAGCAAATTCTTCAGCTTGCACACAGCATTATGGA    290

BSNT_04227___    291 AGGTGAAGC-AGCCGATCTTCCGTTTGAGCCGCTGA---AGCTTTCACGG    336
                     |||.| ||| .|..||||.||||||.||||||..||   |||   |.||.
RBAM_026000__    291 AGGAG-AGCTTGATGATCATCCGTTCGAGCCGAAGAAAGAGC---CGCGC    336

BSNT_04227___    337 AAACAATCTATTTTGGATGAACTCCAAACGATCTGTTTAGAGGAAGGAGT    386
                     |.|||.|.|||||..||||..||||..|||||.|...|.||.|..||.||
RBAM_026000__    337 ACACAGTTTATTTCAGATGCGCTCCGGACGATTTCACTTGATGGGGGTGT    386

BSNT_04227___    387 ATTTTACATTCGCTCCTTTCAGACCTTCCGACTTGGATCA--TACTATAA    434
                     .||||.|.|.||.||.||||||||.|||||.||.||  ||  ||.|||.|
RBAM_026000__    387 TTTTTCCGTGCGTTCGTTTCAGACGTTCCGGCTCGG--CAGGTATTATGA    434

BSNT_04227___    435 GCAGCTGAGAGATATTA--CAGAAGCAGCGATTGATGAATATAAGATGGA    482
                     ||.|||.||||  |.||  |.||.||.|||||.||||||||...||||||
RBAM_026000__    435 GCGGCTCAGAG--AATACGCGGAGGCTGCGATAGATGAATACCGGATGGA    482

BSNT_04227___    483 ACAGGAATATCAAAACTTTATTCAAACACTCAGAGACTATGTAAACGCCA    532
                     |||||||||||||||||||||.||..|.||.|||||.|||||.|...|||
RBAM_026000__    483 ACAGGAATATCAAAACTTTATCCAGTCTCTGAGAGATTATGTGACATCCA    532

BSNT_04227___    533 AACAGCCGCGAATCAAAAAAGTGCATATTGTCCATGATGGTTCCTTTACA    582
                     |.|.||||||.||.||.|||||.|..||.||.|||||..|..|.|||||.
RBAM_026000__    533 ATCCGCCGCGGATGAAGAAAGTCCGCATCGTACATGACCGGGCTTTTACG    582

BSNT_04227___    583 TTATGGGAGCTGCGCTATGTGCCGGAACGGGAAAAAATGAAATACATAGA    632
                     .|.|||||.|||||||||.||.|.|||||||||.|.|..|||||||||||
RBAM_026000__    583 CTGTGGGAACTGCGCTATTTGTCAGAACGGGAACAGAAAAAATACATAGA    632

BSNT_04227___    633 CAGGAGATTTGTCCGGGATCATCCTATGTATATTGATTCTCATTTGCTCG    682
                     |||..|.|||||.|||||.||.||.||||||||.|||||.|||.|.||.|
RBAM_026000__    633 CAGACGGTTTGTGCGGGAGCACCCGATGTATATAGATTCCCATCTCCTTG    682

BSNT_04227___    683 CGCCGCTGATTTCCATTGCGCCTGATGA-AGTCGTGCTTTATACCGACCA    731
                     ||||||||||.|||||||||||||| || .||.|..||.|||||.|||.|
RBAM_026000__    683 CGCCGCTGATCTCCATTGCGCCTGA-GACGGTAGAACTGTATACGGACAA    731

BSNT_04227___    732 GCCCGAGCACATGATGGCAAGGACCATTCAAAACGTATTTCAAGAGAGAG    781
                     .||.|||||.||||||.|.||.||.|||||||||||.|||||.|||||.|
RBAM_026000__    732 ACCGGAGCATATGATGTCCAGAACGATTCAAAACGTGTTTCAGGAGAGGG    781

BSNT_04227___    782 TGGAAATGC----TTCCGCTGCATGCTTTTACAGATGCAGAAATACCGGT    827
                     ||    .||    ||||||||...||.|||.|||           |||  
RBAM_026000__    782 TG----CGCCTTTTTCCGCTGGGCGCGTTTGCAG-----------CCG--    814

BSNT_04227___    828 GAAGCAATCGAAAGGATGA-    846
                       ||.|..||.|||||| | 
RBAM_026000__    815 --AGAAGACGGAAGGAT-AG    831


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04227 and RBAM_026000

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
