Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04223 and RBAM_025980

See Amino acid alignment / Visit BSNT_04223 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:38
# Commandline: needle
#    -asequence dna-align/BSNT_04223___ysaA.1.9828.seq
#    -bsequence dna-align/RBAM_025980___ysaA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04223___ysaA-RBAM_025980___ysaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04223___ysaA-RBAM_025980___ysaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04223___ysaA
# 2: RBAM_025980___ysaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 857
# Identity:     605/857 (70.6%)
# Similarity:   605/857 (70.6%)
# Gaps:          88/857 (10.3%)
# Score: 2260.0
# 
#
#=======================================

BSNT_04223___      1 ATGAGCCTTTTGGCAGAAAGATTTGAATCTGAAGCAGAGGAGAAGATCAT     50
                                                                     ||
RBAM_025980__      1 ------------------------------------------------AT      2

BSNT_04223___     51 GAAAGCCGTATTTTTTGATTTAGATGATACACTACTTTGGGACGAAAAAA    100
                     |||||||||||||||||||||.||.||||||||..|.|||||.|||||||
RBAM_025980__      3 GAAAGCCGTATTTTTTGATTTGGACGATACACTGTTATGGGATGAAAAAA     52

BSNT_04223___    101 GCGTCAGAACAACATTTGCA--GAAACTTGCTTACAGGCGGAGAAAAAAT    148
                     ||||||||||||||||  ||  |||||.||.|||||.|||||.|||||||
RBAM_025980__     53 GCGTCAGAACAACATT--CAGGGAAACATGTTTACAAGCGGAAAAAAAAT    100

BSNT_04223___    149 ATGGCCTTGACCCTGAGGAATTCGAAGCAGCTGTTCGCGAAGCAGCGAGA    198
                     |||||||||||||..|...|||.||||..||.|||||..||||.||..|.
RBAM_025980__    101 ATGGCCTTGACCCGCATACATTTGAAGATGCGGTTCGGAAAGCGGCACGG    150

BSNT_04223___    199 GAATTGTACATGTCATATGAGACGTATCCATATACAGTGATGATCGGCAT    248
                     ||||||||.||||||||.||.||.|||||.|||||.||.|||||||||||
RBAM_025980__    151 GAATTGTATATGTCATACGAAACCTATCCTTATACGGTCATGATCGGCAT    200

BSNT_04223___    249 TAACCCGTTTGAAGGACTGTGGTCCAATTTCTCAGAGCCAATCAGTGAAG    298
                     |||.||||||||||||.|||||.|.|||||.||.|||||..||||.||||
RBAM_025980__    201 TAATCCGTTTGAAGGATTGTGGGCGAATTTTTCCGAGCCGGTCAGCGAAG    250

BSNT_04223___    299 GTTTTCAAAAGCTGAACAAGATTGTGCCGGAGTACAGAAGAAATGCATGG    348
                     |.|||.||.|||||||...|||||.||||||.||||||.||||.||.|||
RBAM_025980__    251 GATTTAAACAGCTGAATCGGATTGCGCCGGAATACAGACGAAACGCCTGG    300

BSNT_04223___    349 ACAAACGGACT--GAAAGCGCTTGGGATCGATGATCCTGCATATGGCGAA    396
                     ||.||||| ||  .|||||| |.||.||.||.|||.|.||.||.||||||
RBAM_025980__    301 ACGAACGG-CTTAAAAAGCG-TCGGTATAGACGATGCGGCTTACGGCGAA    348

BSNT_04223___    397 TACTTGGGAGAGTTTTTTGCGGCAGAGCGCAGAAAACGCCCGTTTGTATA    446
                     ||.||||..||.|||||.|||||.||.||||||.|.||.||||..||.||
RBAM_025980__    349 TATTTGGCGGAATTTTTCGCGGCGGAACGCAGACAGCGTCCGTACGTGTA    398

BSNT_04223___    447 TGATGAAACATTTGCTGTACTCGATCAATTAAAAG--GCAAG-----TAT    489
                     |||||||||.|||||.||.||       |.|||||  |.|||     |||
RBAM_025980__    399 TGATGAAACGTTTGCGGTGCT-------TGAAAAGCTGAAAGGTGTTTAT    441

BSNT_04223___    490 GAATTATTGCTTTTG---ACAAATGGCGATCCGAGTCTGCAAAAGGAGAA    536
                     ||   |||||||.||   |||||.||||||||.||.|||||.||.||.||
RBAM_025980__    442 GA---ATTGCTTCTGCTTACAAACGGCGATCCCAGCCTGCAGAAAGAAAA    488

BSNT_04223___    537 GCTTGCCGGCGTACCTGAGCTTGCTCCTTACTTCAATGAAATCGTCATCT    586
                     .||.||||||||.||||||||.||.|||||.||.||||||||||||||||
RBAM_025980__    489 ACTCGCCGGCGTTCCTGAGCTCGCGCCTTATTTTAATGAAATCGTCATCT    538

BSNT_04223___    587 CGGGCGCATTCGGCAAGGGCAAGCCGGATGTTTCAATTTTTGAACACTGC    636
                     |.|||||.|||||.||.||.||.||.||.|..||.||.||.|||||.|||
RBAM_025980__    539 CAGGCGCTTTCGGAAAAGGGAAACCCGACGCCTCCATATTCGAACATTGC    588

BSNT_04223___    637 CTTAAGCTGATGAATATTGAAAATGACGATGCCATCATGGTCGGCGATAA    686
                     ||....||..||||..|..||||.||.||.|||||.||||||||.|||||
RBAM_025980__    589 CTCGGCCTCCTGAACCTGAAAAAAGAAGACGCCATTATGGTCGGAGATAA    638

BSNT_04223___    687 TTTAAATACTGATATTTTAGGCGCTTCAAGAGCCGGAATCAAAACCGTTT    736
                     ..|.|||||||||||.||.||.||...|.|.||.||.||.|..||.||.|
RBAM_025980__    639 CCTCAATACTGATATATTGGGAGCGAAACGGGCAGGTATTACGACAGTCT    688

BSNT_04223___    737 GGATCAACCGGACGGATAAGAAAAACGAAACTGACGTAACGCCTGATTAC    786
                     ||.|.|||||||||.|.||||||||.||.||.|||.|..|||||||||||
RBAM_025980__    689 GGGTAAACCGGACGCAAAAGAAAAATGATACGGACATTGCGCCTGATTAC    738

BSNT_04223___    787 ATCATCAGCAGCCTTCATGATTTGTTTCCTATATTAGAGAAATAA-----    831
                     .|.||||||...|||||.||..|||||.|.||..||||||||.||     
RBAM_025980__    739 GTGATCAGCGATCTTCACGAGCTGTTTGCGATTATAGAGAAACAAAAAGA    788

BSNT_04223___    831 -------    831
                            
RBAM_025980__    789 AAGATAA    795


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04223 and RBAM_025980

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
