Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_04217 and RBAM_025950

See Amino acid alignment / Visit BSNT_04217 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:38
# Commandline: needle
#    -asequence dna-align/BSNT_04217___lrgA.1.9828.seq
#    -bsequence dna-align/RBAM_025950___ysbA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04217___lrgA-RBAM_025950___ysbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04217___lrgA-RBAM_025950___ysbA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04217___lrgA
# 2: RBAM_025950___ysbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 455
# Identity:     348/455 (76.5%)
# Similarity:   348/455 (76.5%)
# Gaps:          31/455 ( 6.8%)
# Score: 1325.5
# 
#
#=======================================

BSNT_04217___      1 ATGAGTGCTAAAAAAGTGTACGGGTTTTTAACACAAGCATTTATTTTTGC     50
                     ||||||||.||||||||||||||.|||.|.||||||||||||||||||||
RBAM_025950__      1 ATGAGTGCGAAAAAAGTGTACGGATTTCTGACACAAGCATTTATTTTTGC     50

BSNT_04217___     51 CGTCATTATGCTGGTTTCAAATATGATTGCCGCTATTGTCCCAATACCTA    100
                     |||.||||||||..|.||.|||..||||||.||.||||||||.||.||||
RBAM_025950__     51 CGTAATTATGCTCATATCTAATGGGATTGCAGCGATTGTCCCCATTCCTA    100

BSNT_04217___    101 TCCCGGCATCGGTTGTAGGGTTGGTCTTATTATTTCTCCTATTATGTTTG    150
                     |.||.||.||.||.|||||.|||||.|||||||||.||||.|||||..||
RBAM_025950__    101 TACCCGCTTCCGTAGTAGGTTTGGTGTTATTATTTGTCCTCTTATGCCTG    150

BSNT_04217___    151 AAAGTCATTAAACTGGAACAAGTGGAAACGCTCGGAACGTCTTTAACCTC    200
                     |||||.|||||.||.||||||||.||||||||.|||||.||.|||||.||
RBAM_025950__    151 AAAGTGATTAAGCTTGAACAAGTAGAAACGCTGGGAACATCATTAACGTC    200

BSNT_04217___    201 TCTGATCGGATTTTTATTTGTTCCGTCAGGTATATCTGTTATGAATTCGC    250
                     .||||||||||||||||||||.|||||.||.||.||.||.||||||||.|
RBAM_025950__    201 ACTGATCGGATTTTTATTTGTCCCGTCGGGCATCTCCGTGATGAATTCAC    250

BSNT_04217___    251 TTGGTGTGATGCAGCAATACGGCCTGCAAATTGTTCTTGTCATTCTGCTC    300
                     ||||.||.||||||||.||||||.||||.||.|..||.|||||..|.|||
RBAM_025950__    251 TTGGCGTCATGCAGCAGTACGGCGTGCAGATCGCACTCGTCATCTTACTC    300

BSNT_04217___    301 GCAACGATTATTCTGCTGGGGGCTACGGGATTGTTTTCTCAGCTGAT---    347
                     ||.||.||.||||||.|.|||||.|||||..|.||||||||||||||   
RBAM_025950__    301 GCCACCATCATTCTGTTAGGGGCCACGGGCCTTTTTTCTCAGCTGATCTT    350

BSNT_04217___    348 -TCTGTCGCTGAGCGGAAAACG-CAAAACCGCAGCGGACATGAAAACAAA    395
                      ||||||    |||..|||||| ||.|| .|||||  .|.|||||| |.|
RBAM_025950__    351 GTCTGTC----AGCCAAAAACGTCAGAA-GGCAGC--CCCTGAAAA-ACA    392

BSNT_04217___    396 AACAGTGCAAAGCC---CGCAGAACAAT------AACGAACTCGTTCACC    436
                     |||.||||   |||   |      ||||      ||.|||||.||.||.|
RBAM_025950__    393 AACGGTGC---GCCGTTC------CAATCAGGAAAAAGAACTTGTGCAGC    433

BSNT_04217___    437 ATTAA    441
                     ||||.
RBAM_025950__    434 ATTAG    438


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.