Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04216 and RBAM_025940
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:38
# Commandline: needle
# -asequence dna-align/BSNT_04216___lrgB.1.9828.seq
# -bsequence dna-align/RBAM_025940___ysbB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04216___lrgB-RBAM_025940___ysbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04216___lrgB-RBAM_025940___ysbB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04216___lrgB
# 2: RBAM_025940___ysbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 697
# Identity: 566/697 (81.2%)
# Similarity: 566/697 (81.2%)
# Gaps: 14/697 ( 2.0%)
# Score: 2342.0
#
#
#=======================================
BSNT_04216___ 1 ATGGAAAGCACAATGAGTCCTTATTTTGGGATTGTCGTATCACTTGCTGC 50
||||||||.|||||.||.||||||||.||||||||.||
RBAM_025940__ 1 ------------ATGAGTCCATATTTCGGTATTGTCGTTTCACTTGCGGC 38
BSNT_04216___ 51 ATTCGGCATCGGCACCTTTTTATTTAAGAAAACGAAAGGCTTCTTCCTTT 100
.||.|||||||||||.|.|||||||||.|||||||.||||||.|||||.|
RBAM_025940__ 39 CTTTGGCATCGGCACGTATTTATTTAAAAAAACGAGAGGCTTTTTCCTCT 88
BSNT_04216___ 101 TCACTCCTTTGTTTGTTGCCATGGTGCTGGGGATCGCATTTT-TAAAAAT 149
||||.||..|||||||.||.||||||||.||.||| |.|||| |.||..|
RBAM_025940__ 89 TCACCCCGCTGTTTGTCGCGATGGTGCTTGGAATC-CTTTTTCTGAAGCT 137
BSNT_04216___ 150 CGGCGGTTTTTCCTACGCGGATTATAATAACGGGGGAGAGATCATTAAGT 199
||||||||||||.||.|..||||||||.|.|||||||||.||.|||||.|
RBAM_025940__ 138 CGGCGGTTTTTCATATGAAGATTATAAAAGCGGGGGAGACATTATTAAAT 187
BSNT_04216___ 200 TTTTCCTTGAACCGGCAACGATCGCATTTGCAATTCCTTTGTACAAACAA 249
|.|||||.||.||.||.||||||||.|||||.||.|||||.||||||||.
RBAM_025940__ 188 TCTTCCTGGAGCCCGCGACGATCGCTTTTGCGATCCCTTTATACAAACAG 237
BSNT_04216___ 250 AGAGATAAGCTTAAAAAATACTGGTGGCAAATCATGGCCTCCATTATTGC 299
.|.||.||.||.|||||||||||||||||.||||||.|.||.||.||||.
RBAM_025940__ 238 CGTGACAAACTGAAAAAATACTGGTGGCAGATCATGTCTTCTATCATTGT 287
BSNT_04216___ 300 CGGCTCTATCTGCTCTGTCACGATTGTTTATTTGCTCGCTAAAGGCATTC 349
|||||||||||||||.|||||||||||.||||||.||||.||||||||||
RBAM_025940__ 288 CGGCTCTATCTGCTCAGTCACGATTGTCTATTTGATCGCAAAAGGCATTC 337
BSNT_04216___ 350 ATCTCGATTCGGCCGTAATGAAAAGCATGCTTCCGCAGGCGGCTACAACG 399
||||.||..|||||||.||||||||||||||||||||||||||.||||||
RBAM_025940__ 338 ATCTTGACGCGGCCGTTATGAAAAGCATGCTTCCGCAGGCGGCGACAACG 387
BSNT_04216___ 400 GCAATTGCGCTTCCTTTATCAAAAGGCATCGGGGGCATCAGCGACATCAC 449
||||||||.|||||..|.||||||||.|||||.|||||||.|||||||||
RBAM_025940__ 388 GCAATTGCCCTTCCGCTGTCAAAAGGAATCGGCGGCATCACCGACATCAC 437
BSNT_04216___ 450 AGCCTTTGCGGTCATCTTTAACGCTGTCATCGTATATGCGCTCGGAGCAT 499
.||.||.||.||.||.||.|||||.||.|||||.|||||..|.||.||..
RBAM_025940__ 438 CGCTTTCGCCGTTATTTTCAACGCCGTTATCGTCTATGCTATGGGCGCTC 487
BSNT_04216___ 500 TGTTCTTGAAGGTGTTTAAAGTGAAAAATCCGATTTCTAAAGGATTGGCT 549
|.|||||.||..||||||||||||||.|.|||||.|||||||||.|||||
RBAM_025940__ 488 TATTCTTAAAATTGTTTAAAGTGAAACACCCGATCTCTAAAGGACTGGCT 537
BSNT_04216___ 550 CTTGGAACATCCGGACATGCACTTGGTGTAGCGGTCGGGATTGAGATGGG 599
||.||.|||||.|||||.|||||.|||||.||||||||.|||||||||||
RBAM_025940__ 538 CTCGGCACATCAGGACACGCACTCGGTGTTGCGGTCGGTATTGAGATGGG 587
BSNT_04216___ 600 AGAAGTTGAAGCTGCGATGGCAAGTATTGCTGTTGTCGTAGTAGGAGTGG 649
||||||.|||||.||.|||||||||||.||.||||||||.||||||||||
RBAM_025940__ 588 AGAAGTAGAAGCGGCAATGGCAAGTATCGCGGTTGTCGTCGTAGGAGTGG 637
BSNT_04216___ 650 TAACGGTTTTGGTCATCCCTGTGTTCGTGCAGCTGATCGGTGGATAA 696
|.|||||..||||.||.||.||.|||||.|||||.|||||.||||||
RBAM_025940__ 638 TGACGGTGCTGGTTATTCCGGTATTCGTTCAGCTCATCGGAGGATAA 684
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