Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04210 and RBAM_025900

See Amino acid alignment / Visit BSNT_04210 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:37
# Commandline: needle
#    -asequence dna-align/BSNT_04210___ysdA.1.9828.seq
#    -bsequence dna-align/RBAM_025900___ysdA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04210___ysdA-RBAM_025900___ysdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04210___ysdA-RBAM_025900___ysdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04210___ysdA
# 2: RBAM_025900___ysdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 288
# Identity:     183/288 (63.5%)
# Similarity:   183/288 (63.5%)
# Gaps:          39/288 (13.5%)
# Score: 543.0
# 
#
#=======================================

BSNT_04210___      1 ATGATTATTG--CAGCTTATTT-----GTTATTGATTAATCTG-TGCGGT     42
                           ||.|  |..||.||||     | |.|||| |||.|.| |.|||.
RBAM_025900__      1 ------ATGGCTCTCCTCATTTACGCCG-TGTTGA-TAAACGGATACGGC     42

BSNT_04210___     43 TTTTGGGTGATGGGCATTGACAAACGCAAAGCGCAGCAGCACAAGTGGAG     92
                     ||||||.|.||||||..|||.|||.|.|.|||..||..|||||.||||||
RBAM_025900__     43 TTTTGGATCATGGGCGCTGATAAAAGAAGAGCAAAGGCGCACAGGTGGAG     92

BSNT_04210___     93 AATTTCTGAAGACCGGCTGTGGCTGATAGCCATCGTATTTGGAGCGCTCG    142
                     |||.||.||..|.||..|.|||||.|.||||.||.|.||.||..|.||||
RBAM_025900__     93 AATATCAGAGAAACGAATATGGCTCACAGCCGTCATGTTCGGCTCACTCG    142

BSNT_04210___    143 GTGTCTGGCTTGGCATGCAAACCTTCAGACATAAAACGAAACACGCTTC-    191
                     |.||.|||.|.|||||||..||||||||.|||||.|||||||||...|| 
RBAM_025900__    143 GCGTATGGATCGGCATGCGCACCTTCAGGCATAAGACGAAACACAAATCC    192

BSNT_04210___    192 -TTTTAAGTACGGAGTACCGCTTCTTCTGGTAATTGAAGCGATTCTCATC    240
                      |||||  |||||.||.|||||.|||.|..|.|.||||||....||..| 
RBAM_025900__    193 TTTTTA--TACGGGGTGCCGCTGCTTTTTCTCACTGAAGCCGCCCTTGT-    239

BSNT_04210___    241 GCT-ATTTACTACAGCCCGTTTGATTTATAA-------    270
                     ||| ||.||          ||||||.|||||       
RBAM_025900__    240 GCTGATGTA----------TTTGATGTATAAAACATAA    267


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