Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04206 and RBAM_025880
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:37
# Commandline: needle
# -asequence dna-align/BSNT_04206___ysdC.1.9828.seq
# -bsequence dna-align/RBAM_025880___ysdC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04206___ysdC-RBAM_025880___ysdC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04206___ysdC-RBAM_025880___ysdC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04206___ysdC
# 2: RBAM_025880___ysdC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1089
# Identity: 878/1089 (80.6%)
# Similarity: 878/1089 (80.6%)
# Gaps: 6/1089 ( 0.6%)
# Score: 3529.0
#
#
#=======================================
BSNT_04206___ 1 ATGGCAAAATTAGATGAAACATTGACCATGCTGAAAGATTTAACAGATGC 50
|||.||||||||||||||||..|.|||||||||||||..|||||.|||||
RBAM_025880__ 1 ATGACAAAATTAGATGAAACGCTCACCATGCTGAAAGCGTTAACGGATGC 50
BSNT_04206___ 51 AAAAGGCATACCGGGCAATGAAAGAGAAGTAAGGCAAGTGATGAAATCAT 100
||||||.||||||||.|||||.|||||||||||.||||||||||||||||
RBAM_025880__ 51 AAAAGGGATACCGGGAAATGAGAGAGAAGTAAGACAAGTGATGAAATCAT 100
BSNT_04206___ 101 ACATAGAACCATTTGCTGATGAGGTGACAACAGATCGCCTGGGCAGTTTA 150
||||||||||||||||.|||||.||.||||||||.||.|||||.||.|||
RBAM_025880__ 101 ACATAGAACCATTTGCCGATGATGTCACAACAGACCGGCTGGGAAGCTTA 150
BSNT_04206___ 151 ATTGCCAAAAAAACTGGTGCAGAAAACGGCCCGAAAATTATGATCGCCGG 200
||.|||||||||||.||...|||||||||.||||||||.||||||.|.||
RBAM_025880__ 151 ATCGCCAAAAAAACGGGCAAAGAAAACGGTCCGAAAATCATGATCTCAGG 200
BSNT_04206___ 201 ACATTTGGATGAAGTCGGCTTTATGGTGACACAAATCACAGATAAAGGCT 250
.|||||.|||||||||||.|||||||||||.||||||||.||||||||||
RBAM_025880__ 201 GCATTTAGATGAAGTCGGTTTTATGGTGACGCAAATCACTGATAAAGGCT 250
BSNT_04206___ 251 TTATCCGTTTTCAAACCGTTGGCGGCTGGTGGGCTCAGGTTATGCTTGCC 300
||.||||.|||||||||||.||||||||||||.|||||||.|||||.|||
RBAM_025880__ 251 TTCTCCGCTTTCAAACCGTCGGCGGCTGGTGGTCTCAGGTCATGCTGGCC 300
BSNT_04206___ 301 CAGCGCGTCACCATCGTCACAAAAAAAGGAGAAATCACTGGGGTTATCGG 350
||||||||||||.||||.|||||||||||.||.|||||.|||.|.|||||
RBAM_025880__ 301 CAGCGCGTCACCGTCGTGACAAAAAAAGGGGACATCACGGGGATCATCGG 350
BSNT_04206___ 351 CTCTAAGCCGCCGCATATTTTATCTCCTGAAGCAAGAAAAAAATCAGTGG 400
.||.||.|||||.||.|||.|..|||||||.||.|||||||||.|.|..|
RBAM_025880__ 351 TTCGAAACCGCCTCACATTCTGCCTCCTGACGCCAGAAAAAAAGCCGCCG 400
BSNT_04206___ 401 AAATAAAAGACATGTTTATTGATATTGGAGCTTCAAGCCGGGAAGAAGCC 450
|.||.|||||.|||||.||.|||||.||.||.||.|||||.||||||||.
RBAM_025880__ 401 ATATTAAAGAGATGTTCATCGATATCGGGGCGTCCAGCCGTGAAGAAGCA 450
BSNT_04206___ 451 TTGGAGTGGGGTATACTCCCGGGAGATATGATCGTTCCGCATTTTGAATT 500
.||||.|||||..|.||.|||||.||...|||.||.|||.||||||||||
RBAM_025880__ 451 ATGGAATGGGGCGTTCTTCCGGGTGACCAGATTGTGCCGTATTTTGAATT 500
BSNT_04206___ 501 TACGGTCATGAACAATGAAAA--ATTCCTACTCGCAAAGGCGTGGGACAA 548
|||.||.|||||||||||||| ||| ||.|.||.|||||.||||||||
RBAM_025880__ 501 TACAGTGATGAACAATGAAAAACATT--TATTGGCGAAGGCATGGGACAA 548
BSNT_04206___ 549 CCGCATTGGCTGTGCGATTGCAATTGATGTGTTAAGAAA-CTTACAAAAC 597
|||.||.|||||.||||||||.||.|||||.||||.||| ||.| |||||
RBAM_025880__ 549 CCGTATCGGCTGCGCGATTGCCATCGATGTATTAAAAAATCTGA-AAAAC 597
BSNT_04206___ 598 ACAGATCATCCAAATATAGTGTATGGCGTCGGAACCGTGCAGGAGGAAGT 647
|..||||||||.|||..|||.||.||.||||||||.||.|||||.|||||
RBAM_025880__ 598 AGCGATCATCCGAATGAAGTATACGGGGTCGGAACGGTTCAGGAAGAAGT 647
BSNT_04206___ 648 CGGCCTGAGGGGAGCGAAAACGGCTGCACACACCATTCAGCCTGATATTG 697
|||.||..|.||.||||||||.||.|||||.||.||||||||||||||.|
RBAM_025880__ 648 CGGGCTTCGCGGGGCGAAAACAGCGGCACATACGATTCAGCCTGATATCG 697
BSNT_04206___ 698 CGTTTGGTGTTGATGTAGGGATAGCAGGAGACACGCCTGGCATTTCCGAG 747
||||.|||||.|||||.||.||.||.|||||.||.||.||.|||||.||.
RBAM_025880__ 698 CGTTCGGTGTGGATGTCGGAATTGCCGGAGATACACCGGGAATTTCTGAA 747
BSNT_04206___ 748 AAAGAAGCGCAGAGCAAAATGGGCAAAGGCCCGCAGATTATCGTTTACGA 797
|||||.|||||.||||||||.|||.||||.|||||.|||||..|.||.||
RBAM_025880__ 748 AAAGAGGCGCAAAGCAAAATCGGCGAAGGGCCGCAAATTATTCTGTATGA 797
BSNT_04206___ 798 TGCATCCATGGTCTCTCACAAAGGTTTGCGCGATGCAGTTGTAGCCACTG 847
.||.||.|||||.|||||||||||..||||.||....||.||...|||.|
RBAM_025880__ 798 CGCGTCAATGGTATCTCACAAAGGGCTGCGTGACCTTGTCGTGAACACGG 847
BSNT_04206___ 848 CGGAGGAAGCCGGCATTCCGTACCAATTTGATGCCATTGCCGGCGGCGGA 897
||||.|||||.||.||||||||.|||||.|||.||||||||||.||.||.
RBAM_025880__ 848 CGGAAGAAGCGGGAATTCCGTATCAATTCGATTCCATTGCCGGAGGGGGC 897
BSNT_04206___ 898 ACTGATTCTGGTGCCATCCATTTGACGGCGAATGGTGTTCCTGCGCTGTC 947
||.|||||.|||.||||.||.||.||.||.||.||.||.||.||||||||
RBAM_025880__ 898 ACGGATTCAGGTTCCATTCACTTAACCGCAAACGGAGTGCCGGCGCTGTC 947
BSNT_04206___ 948 CATTACCATTGCAACCCGCTACATTCATACGCACGCGGCCATGCTGCATC 997
||||||.||.||.||.||||||||||||||.||.||.||.||..||||||
RBAM_025880__ 948 CATTACGATCGCGACGCGCTACATTCATACTCATGCCGCTATTTTGCATC 997
BSNT_04206___ 998 GTGATGATTATGAAAACGCGGTAAAGTTAATTACAGAAGTCATTAAGAAG 1047
|.|||||||||||.||..|||||||.||.||.||||||||.|||||.||.
RBAM_025880__ 998 GGGATGATTATGAGAATACGGTAAAATTGATCACAGAAGTGATTAAAAAA 1047
BSNT_04206___ 1048 TTAGACCGAAAAACGGTTGACGAAATTACGTACCAATAA 1086
|||||.||..|||||||||||...|||||.||.||||||
RBAM_025880__ 1048 TTAGATCGGGAAACGGTTGACCGTATTACTTATCAATAA 1086
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