Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04193 and RBAM_025770
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:35
# Commandline: needle
# -asequence dna-align/BSNT_04193___cstA.1.9828.seq
# -bsequence dna-align/RBAM_025770___cstA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04193___cstA-RBAM_025770___cstA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04193___cstA-RBAM_025770___cstA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04193___cstA
# 2: RBAM_025770___cstA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1813
# Identity: 1430/1813 (78.9%)
# Similarity: 1430/1813 (78.9%)
# Gaps: 32/1813 ( 1.8%)
# Score: 5597.0
#
#
#=======================================
BSNT_04193___ 1 ATGAATGCGGTTACAATTGTGATAGCATCAATGTGTATTTTGGCTATTGC 50
|||||||||.|||||||.||.|||||.||.||.||||||.||||.||.||
RBAM_025770__ 1 ATGAATGCGATTACAATCGTCATAGCGTCTATATGTATTCTGGCGATCGC 50
BSNT_04193___ 51 CTATCGTTTATACGGAACATTTATGATGGTGAAGGTTCTCAAAGTAAATG 100
||||||..|.|||||.||.|||||||||||.||.||..|.|||.|.||||
RBAM_025770__ 51 CTATCGGCTTTACGGTACCTTTATGATGGTCAAAGTATTAAAAATCAATG 100
BSNT_04193___ 101 AT--GACAAGCCGACACCTGCTCACGTGCTTGAGGATGGGAAAGACTATG 148
|| |||| |||||.||.||.||.||||||||||||||||||||.||||
RBAM_025770__ 101 ATCAGACA--CCGACTCCGGCCCATGTGCTTGAGGATGGGAAAGATTATG 148
BSNT_04193___ 149 TGCCTACAAATAAATGGGTTTCGTTCGGCCACCATTTTGCCGCGATCGCA 198
||||.||.|||||.|||||.||.|||||||||||.||.||.||.|||||.
RBAM_025770__ 149 TGCCGACGAATAAGTGGGTGTCATTCGGCCACCACTTCGCGGCAATCGCC 198
BSNT_04193___ 199 GCGGCCGGACCGTTGGTCGGACCAATTCTGGCGGCGCAGTTTGGCTATTT 248
||.|||||.|||.|.||||||||.||||||||.||.|||||.||||||.|
RBAM_025770__ 199 GCTGCCGGCCCGCTTGTCGGACCGATTCTGGCAGCTCAGTTCGGCTATCT 248
BSNT_04193___ 249 G-CCGGGATTATTGTGGCTGTTAATCGGGGCGGTAATTGGGGGAGCCGTC 297
| |||||.|| ||.||||||||||||||||||||.||.||.||||||||.
RBAM_025770__ 249 GCCCGGGCTT-TTATGGCTGTTAATCGGGGCGGTGATCGGAGGAGCCGTG 297
BSNT_04193___ 298 CATGATATTGTGGTGTTGTTTGCATCGATGCACAAAAACGGAAAATCGCT 347
||.||||||||.||.|||||||||||.||||..||||||||.|||.|.||
RBAM_025770__ 298 CACGATATTGTCGTATTGTTTGCATCAATGCGGAAAAACGGGAAAACACT 347
BSNT_04193___ 348 GTCGGAAGTGGCGAAGGCTGAGCTTGGCCCTGTTGCAGGATTTTGTACAG 397
.||.|||||.||.||.|..|||||.|||||.||.||.||.|||||.||.|
RBAM_025770__ 348 TTCTGAAGTCGCCAAAGAAGAGCTCGGCCCGGTGGCGGGTTTTTGCACGG 397
BSNT_04193___ 398 GACTGTCCATGCTGTTTATCATCACGATCACAATGGCGGGCCTGTCGATG 447
|.||.||.||||||||||||||.||||||||.||||||||.|||||.|||
RBAM_025770__ 398 GTCTCTCGATGCTGTTTATCATTACGATCACGATGGCGGGGCTGTCCATG 447
BSNT_04193___ 448 GTTGTCTTGCATGCGCTTGAACGTAATCCATGGGGAACATTTGCGGTAGG 497
|||||..||||.||||||||....||.||.||||||||.||||||||.||
RBAM_025770__ 448 GTTGTGCTGCACGCGCTTGAGAAAAACCCGTGGGGAACGTTTGCGGTGGG 497
BSNT_04193___ 498 GATTACGATACCGATTGCGATGGGTGTGGGCTTATTTTATAAGAAAACGG 547
|||||||||.|||||.||||||||.||.|||.|.|..|||||.|||||||
RBAM_025770__ 498 GATTACGATTCCGATCGCGATGGGGGTCGGCCTCTACTATAAAAAAACGG 547
BSNT_04193___ 548 GAAATTTAAAGCTCGCTTCAACGGTCGGCTTTCTCTTTTTAATGGCAGGA 597
|.|||.|.||.|||||.|||||.|||||.|||||.||.||||||||.||.
RBAM_025770__ 548 GCAATCTCAAACTCGCATCAACTGTCGGGTTTCTTTTGTTAATGGCCGGT 597
BSNT_04193___ 598 GTCTTTATCGGTCCATGGGTACAGACTACAGCGCTTGGTGACTTTTTAAC 647
||..|.|||||.||..||.|.|||||.||.||.||.||.|||.|..|.||
RBAM_025770__ 598 GTTGTCATCGGGCCGCGGCTGCAGACAACGGCTCTCGGGGACATGCTGAC 647
BSNT_04193___ 648 GCTAGATACGAAAACGCTTGCAATCGCGCTTCCTGTTTACGCGTTTTTTG 697
.||.|||.||||||||||||||.|.|||||||||||.||.||||||||.|
RBAM_025770__ 648 ACTGGATGCGAAAACGCTTGCAGTGGCGCTTCCTGTCTATGCGTTTTTCG 697
BSNT_04193___ 698 CGGCTGCGCTTCCCGTTTGGCTGCTTCTGGCTCCGCGTGATTATTTAAGC 747
|.||.||||||||.||||||||..|.||||||||||||||.|||||||||
RBAM_025770__ 698 CCGCGGCGCTTCCGGTTTGGCTTTTGCTGGCTCCGCGTGACTATTTAAGC 747
BSNT_04193___ 748 AGCTTTATGAAAATCGGTGTTTTTATCGCTTTGATTGTTGGTGTGTTTGT 797
||.||||||||||||||.||||||..|||||||||.|..||.||.|||.|
RBAM_025770__ 748 AGTTTTATGAAAATCGGGGTTTTTGCCGCTTTGATCGCAGGCGTCTTTTT 797
BSNT_04193___ 798 CGTCAATCCGTCCATTCCGTTCCCTGCGTTTACAGA----ATTCGTAAAA 843
|||||||||..|||||...||.||.||..|.||.|| |||| |.
RBAM_025770__ 798 CGTCAATCCCGCCATTAAATTTCCGGCCGTAACGGAGTTTATTC----AC 843
BSNT_04193___ 844 GGCGGCGGGCCGGTGCTGGCAGGACCTGTCTGGCCGTTCATCTCAATAAC 893
|||||.|||||||||.|.||.||.||||||||||||||.||.||||||||
RBAM_025770__ 844 GGCGGAGGGCCGGTGATCGCGGGTCCTGTCTGGCCGTTTATTTCAATAAC 893
BSNT_04193___ 894 CATCGCCTGCGGGGCGATCTCTGGGTTCCATGCCTTTGTCGGTTCAGGAA 943
.||.||||||||.||.||.||.||.||.|||||.|||||||||||.||.|
RBAM_025770__ 894 GATTGCCTGCGGCGCCATTTCGGGCTTTCATGCATTTGTCGGTTCCGGCA 943
BSNT_04193___ 944 CGACACCGAAAATGCTGAATAAATGGAGTGATATGAAGCCGGTTGCGTTT 993
|.||.||||||||||||.||||||||||||||||.|||||||||||.||.
RBAM_025770__ 944 CAACGCCGAAAATGCTGGATAAATGGAGTGATATAAAGCCGGTTGCTTTC 993
BSNT_04193___ 994 GGCGCAATGCTTGTTGAGTGTCTTGTTGGCATCATGGCGCTGATTGCAGC 1043
||.||.||||||||.||.|||||.||.||.||.||||||||.||||||||
RBAM_025770__ 994 GGAGCGATGCTTGTGGAATGTCTCGTCGGAATTATGGCGCTCATTGCAGC 1043
BSNT_04193___ 1044 GACCGCTTTACAGCCTGCTGATTACTTTGCGATTAACAGCACGCCTGAGG 1093
..|||||.|..||||.||.||.||.|||||.|||||||||||||||||..
RBAM_025770__ 1044 TGCCGCTCTTGAGCCCGCCGACTATTTTGCTATTAACAGCACGCCTGAAA 1093
BSNT_04193___ 1094 TTTTCCGTACGCTTGGCATGAATGTCATACATTTGCCTGAATTGAGCAGG 1143
|.|||||.||.||.||.|||||||||.|.|||.|||||||||||||.|..
RBAM_025770__ 1094 TATTCCGCACCCTCGGGATGAATGTCGTCCATCTGCCTGAATTGAGTAAA 1143
BSNT_04193___ 1144 GAAATCG------GTTTGGACTTAGAAGGAAGAACAGGGGGAGCCGTTAC 1187
||||||| ||.|| |||||||||||.||.||.||.|||||
RBAM_025770__ 1144 GAAATCGGGCTCAGTCTG------GAAGGAAGAACGGGCGGCGCTGTTAC 1187
BSNT_04193___ 1188 GCTTGCGGTGGGGATGACTTATATTTTTACCGGA-ATGCCGTTTTTCAGC 1236
||||||.||.||.|||||.|||||.|||| |||| ||.|||||||||||.
RBAM_025770__ 1188 GCTTGCCGTCGGAATGACGTATATCTTTA-CGGAGATTCCGTTTTTCAGT 1236
BSNT_04193___ 1237 CATTTGGCCTCATACTTTTTCCAATTTGTCATTATGTTTGAAGCGGTCTT 1286
||||||||.|||||||||||.|||||.||||||||||||||||||||.||
RBAM_025770__ 1237 CATTTGGCTTCATACTTTTTTCAATTCGTCATTATGTTTGAAGCGGTGTT 1286
BSNT_04193___ 1287 TATTTTAACAGCGATTGACGCCGGCACACGCGTTGCCCGTTATTTGATCC 1336
|||||||||.||||||||.||.||.||.||.||.|||||.||.|||||.|
RBAM_025770__ 1287 TATTTTAACGGCGATTGATGCGGGAACCCGTGTCGCCCGGTACTTGATTC 1336
BSNT_04193___ 1337 AGGATTTCTTCGGGGAGGTGTATAAACCGCTGAAGAAAACAGACTGGATT 1386
|.||.||.|||||.|||||.|||||.||||||||.||||||||||||.|.
RBAM_025770__ 1337 AAGAGTTTTTCGGAGAGGTCTATAAGCCGCTGAAAAAAACAGACTGGCTG 1386
BSNT_04193___ 1387 CCGGGCTCTGTATTTGCCAGCGCGCTTGCCTGTTTGATGTGGGGGTA-CT 1435
||||||||..|.||..|.||||||||.|||||..||.|||||||.|| ||
RBAM_025770__ 1387 CCGGGCTCGATTTTCTCAAGCGCGCTCGCCTGCCTGCTGTGGGGCTATCT 1436
BSNT_04193___ 1436 TGCTGTATTCAGGAGATATCGGTTCCATTTGGGCGCTGTTCGGCGTTTCT 1485
| ||||||||.||.||.|||.|.|||||||||||||||||||||||.||.
RBAM_025770__ 1437 T-CTGTATTCGGGCGACATCAGCTCCATTTGGGCGCTGTTCGGCGTATCC 1485
BSNT_04193___ 1486 AATCAGCTGATGGCTTCAGTGGGGCTGATTATCGGAGCGACCATCGTGCT 1535
||||||||.|||||.||.||.||..|.||||||||.||||||.||||..|
RBAM_025770__ 1486 AATCAGCTTATGGCGTCTGTCGGCTTAATTATCGGTGCGACCGTCGTATT 1535
BSNT_04193___ 1536 GAAAATCGCTGATAAACGCCGGTACATTCTGACTTGCCTTATCCCGCTTG 1585
.|||||.||.|||||.||.||.||.||.|||||.|||||.||.||.||.|
RBAM_025770__ 1536 AAAAATAGCGGATAAGCGGCGCTATATGCTGACATGCCTGATTCCCCTCG 1585
BSNT_04193___ 1586 CCTATTTATATGTCACTGTCAATTATGCGGGCTATTGGATGGTGCGCAAT 1635
|.|||||.||.||.||.|||||.||||||||.||||||||||||||..||
RBAM_025770__ 1586 CTTATTTGTACGTGACCGTCAACTATGCGGGTTATTGGATGGTGCGGTAT 1635
BSNT_04193___ 1636 GTGTATCTCAATCCTGAAGCAGCAGGATATAGTGTATTGAATGGCGTATT 1685
||||||.|.||.||.|||||.||.|||||.|..||..||||||||||.||
RBAM_025770__ 1636 GTGTATTTGAACCCCGAAGCGGCGGGATACAACGTGCTGAATGGCGTTTT 1685
BSNT_04193___ 1686 ATCTATCATCATGCT-GGTGTTAGGCTTCATCATTATTGTGGCGGCTGTG 1734
|||.||.|||||||| ..|.|..||||| .|.|||||..|.|||||||||
RBAM_025770__ 1686 ATCCATTATCATGCTCATTCTCGGGCTT-GTGATTATCATTGCGGCTGTG 1734
BSNT_04193___ 1735 AAAAAATGGGCGCAGATGTGGAAAGATCCGAGCTTAAGGATGGAAGCATC 1784
||||||||||||.|..|.|||...||||||||....||..|||||||.||
RBAM_025770__ 1735 AAAAAATGGGCGAATGTATGGCGTGATCCGAGTGCCAGACTGGAAGCTTC 1784
BSNT_04193___ 1785 TATACCGGTCTAG 1797
.|||||.|..||.
RBAM_025770__ 1785 AATACCCGGATAA 1797
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