Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04189 and RBAM_025760
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:35
# Commandline: needle
# -asequence dna-align/BSNT_04189___ysfD.1.9828.seq
# -bsequence dna-align/RBAM_025760___ysfD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04189___ysfD-RBAM_025760___ysfD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04189___ysfD-RBAM_025760___ysfD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04189___ysfD
# 2: RBAM_025760___ysfD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1359
# Identity: 1003/1359 (73.8%)
# Similarity: 1003/1359 (73.8%)
# Gaps: 54/1359 ( 4.0%)
# Score: 3614.0
#
#
#=======================================
BSNT_04189___ 1 ATGACAACAGAAAAAGAAATGAAACAGATCCAAGATA-AATTTAAAGAGC 49
||||||||.|..|||||...||||||.||.||| |.| ||||.|||.|.|
RBAM_025760__ 1 ATGACAACGGCTAAAGAGCAGAAACACATTCAA-ACAGAATTCAAAAACC 49
BSNT_04189___ 50 GTATGGATGAAGGCGAGTTATTAAATTGTATGCGCTGCGGCTTCTGTCTT 99
|.|||||||||||.||.||..|.||.||||||||||||||||||||.|||
RBAM_025760__ 50 GCATGGATGAAGGTGAATTGCTGAACTGTATGCGCTGCGGCTTCTGCCTT 99
BSNT_04189___ 100 CCTTCCTGTCCGACCTATATCGAATCGGGATTTCATGAAACACACTCTCC 149
|||||||||||||||||||||||||||||||||||.|||.|.||.||.||
RBAM_025760__ 100 CCTTCCTGTCCGACCTATATCGAATCGGGATTTCAAGAATCCCATTCGCC 149
BSNT_04189___ 150 GCGCGGGCGTATCGCCTTAATGAAAGCCGTAGCGGACGGTATGATTGAAC 199
||||||.||.||||||.|.|||||||||||..|.|||||..||||.||.|
RBAM_025760__ 150 GCGCGGCCGGATCGCCCTGATGAAAGCCGTCACTGACGGACTGATCGAGC 199
BSNT_04189___ 200 CGGATGAAGATGTCGAACGGTCGCTGTCACTTTGCCTTGGCTGCCGCGCC 249
|.||||||||||||||.||.||.||.||.||.||.||.||.|||||.||.
RBAM_025760__ 200 CTGATGAAGATGTCGAGCGCTCACTTTCGCTGTGTCTCGGATGCCGGGCA 249
BSNT_04189___ 250 TGTGAGCCTGTATGCCCGTCTGGCGTGAAATACGGTCAGCTGCTTGAGGA 299
||.|||||.||.||.|||.|.||.||.||.|||||.|||||||||||.||
RBAM_025760__ 250 TGCGAGCCCGTTTGTCCGGCAGGGGTCAATTACGGACAGCTGCTTGAAGA 299
BSNT_04189___ 300 AGCCAGAGATATTATCCACCAAAATAAAAAACACTCGCTCGGCGCACGTG 349
|||.||.|||||.||.||.||||||||||||||...||..||||..|||.
RBAM_025760__ 300 AGCGAGGGATATCATTCATCAAAATAAAAAACATAAGCCGGGCGTGCGTC 349
BSNT_04189___ 350 TCATGC-GAAAGGCGGCTTTTCA-CGAGCTGTTTCCGCATCAAAACCGCA 397
||.||| |||||.||.| |||| ||.|||.||.||.||.||||||||||
RBAM_025760__ 350 TCTTGCGGAAAGCCGCC--TTCACCGGGCTTTTCCCTCACCAAAACCGCA 397
BSNT_04189___ 398 TGCGCTCAGCTGTAAGCCTTATCGGTTTGTATCAGCGGTCAGGACTGCAA 447
|||...||||.||.|..|||.||||..|.||.||..|.||.||||||||.
RBAM_025760__ 398 TGCAGACAGCCGTGAATCTTCTCGGAATATACCAAAGATCGGGACTGCAG 447
BSNT_04189___ 448 ACCGCTGTGCGTAAAACCGGTATGCTTCGCGTCCTGCCTGAGCATTTGCG 497
|||||.||..|.||||||||||||||.|||||..|||||||.|||.||||
RBAM_025760__ 448 ACCGCCGTCAGAAAAACCGGTATGCTGCGCGTTTTGCCTGAACATCTGCG 497
BSNT_04189___ 498 AACGATGGAAGCTGTTCTTCCTGATGTTCCAAAAAGCAAAGACATGAAAC 547
.||.||||||...||.||.||....||.||.|||.|.|||||||||||..
RBAM_025760__ 498 CACAATGGAACAAGTGCTCCCGCCCGTCCCGAAACGGAAAGACATGAAGG 547
BSNT_04189___ 548 ATCGGCCGCGT----TTCCTGCCGTCAATTGGCCCCATGAAAAAACGGGT 593
|..|||||||| |||.||||| ..||.|||.|..|||||||||.
RBAM_025760__ 548 AAAGGCCGCGTTTTCTTCATGCCG----CGGGTCCCGTCCAAAAACGGGC 593
BSNT_04189___ 594 CGCCTTTTTTTCGGGCTGCTTAATGGATACGATGTTTTTACCGACTAACA 643
|||.|||||.||||||||||||||||||||||||||||||.||||.||..
RBAM_025760__ 594 CGCTTTTTTCTCGGGCTGCTTAATGGATACGATGTTTTTAGCGACAAATC 643
BSNT_04189___ 644 ATGCCACATTGAAGCTTTTACAGCTGGCAGGCTGCGACATTGTCATTCCG 693
||||.|||..|..||||||||||..|||.||.||.||.||.|...|||||
RBAM_025760__ 644 ATGCGACAACGGCGCTTTTACAGGCGGCCGGGTGTGAAATCGCGGTTCCG 693
BSNT_04189___ 694 CCTGAACAGGCTTGCTGCGGGGCGCTGCATGGACACAGCGGTGAAAAAAA 743
...|..|||||.||||||||.|||||.||.||.||||||||.||||||.|
RBAM_025760__ 694 GACGGCCAGGCGTGCTGCGGCGCGCTTCACGGGCACAGCGGAGAAAAAGA 743
BSNT_04189___ 744 CACAGGGAAAGAGCTCGCGAAACAAAATATCGCTGCTTTTGAAGCGTTAG 793
.|..||.|||||.||.||.||.|..||||||||.||||||||.|||.|.|
RBAM_025760__ 744 GATGGGAAAAGAACTGGCCAAGCGGAATATCGCGGCTTTTGAGGCGCTTG 793
BSNT_04189___ 794 ACGTTGATGCTGTCATTACAAACGCAGGAGGATGCGGAGCCTTTC-TCAC 842
|||.||||..|.|||||||||||||.||.||||||||.||||||| |||
RBAM_025760__ 794 ACGCTGATTATATCATTACAAACGCCGGCGGATGCGGCGCCTTTCTTCA- 842
BSNT_04189___ 843 TGAATATAATCATTTGCTGAAGGATGACCCTGAGTGGTCGGAACGGGCTG 892
.||||||...|||||.|||||.|||||.||||..|||.|||||||.||
RBAM_025760__ 843 GGAATATCCGCATTTACTGAAAGATGAACCTGGATGGGCGGAACGTGC-- 890
BSNT_04189___ 893 CTGCG-----TTTGTTCAAAAGCTGAAGGATTTTTCTTCTGTTTTGGTTG 937
|| ||.||.|..|||||.||.||.|||||.||.||..||||||
RBAM_025760__ 891 ---CGAACAATTCGTCCGGAAGCTCAAAGACTTTTCATCCGTACTGGTTG 937
BSNT_04189___ 938 AGCTCGATTTCCATCAAATGGATCTAGCGCTCG-AGACGCCTCAGGTCGT 986
|.||..|.||||||||||...|.|| |||..|| ||.|.|||||..||||
RBAM_025760__ 938 ATCTGAAGTTCCATCAAAAAAACCT-GCGGGCGCAGTCTCCTCATATCGT 986
BSNT_04189___ 987 TACCTACCAAGATTCATGCCACCTAAGAAATGTAATGCATACGTCGCTTG 1036
.||.||.||.||.||.|||||.||..|.|||||.|||||||||||....|
RBAM_025760__ 987 CACATATCAGGACTCCTGCCATCTCCGCAATGTGATGCATACGTCAGAGG 1036
BSNT_04189___ 1037 CGCCCCGCCAGCTTCTTAAAAGCATCAAAGGGGCGGAATTCAAAGAAATG 1086
..||.|||..||||.|.||||||||.||||||||.||.|.||.|||||||
RBAM_025760__ 1037 AACCGCGCACGCTTTTGAAAAGCATTAAAGGGGCTGAGTACAGAGAAATG 1086
BSNT_04189___ 1087 GAGAAAGCAGACAGCTGCTGCGGATCAGCGGGAATTTACAACATCGTCGA 1136
||.||.||.||||||||||||||.||.|||||||||||.||.||....||
RBAM_025760__ 1087 GAAAAGGCCGACAGCTGCTGCGGGTCGGCGGGAATTTATAATATAACAGA 1136
BSNT_04189___ 1137 AGCTGAAATGTCTATGAGAATACTGGACAGTAAAATG---GCTGCCGTCA 1183
..|.||.||||||||||.||||.|.|||||.||.||| ||.||||..|
RBAM_025760__ 1137 GTCAGAGATGTCTATGAAAATATTAGACAGCAAGATGAAAGCCGCCGGAA 1186
BSNT_04189___ 1184 AAGCAACCGAAGCGATCCTCATTGTAACAGCAAATCCCGGCTGCCTGCTG 1233
| |||.||.|||..|.||||.||.|||||.||||||||.|||||.|||
RBAM_025760__ 1187 A---AACGGAGGCGGCCGTCATCGTGACAGCCAATCCCGGATGCCTTCTG 1233
BSNT_04189___ 1234 CAGATGAAGCTCGGCATTGAACGCGAAGGACTAA---GCGGTAAAGTCAG 1280
||.|||.|||||||||||..||||||||||.||| ||.|| |||.|
RBAM_025760__ 1234 CAAATGCAGCTCGGCATTTTACGCGAAGGATTAACAGGCCGT---GTCCG 1280
BSNT_04189___ 1281 AGCCGTTCACCTGGCTGATTTGCTATTGGAAGCAGCCG----GGCACAAA 1326
.||.|||||..||||.||||..||.||||||||.||.| |.||.||
RBAM_025760__ 1281 CGCGGTTCATTTGGCGGATTACCTTTTGGAAGCGGCGGATTTGTCATAA- 1329
BSNT_04189___ 1327 CCATCATGA 1335
RBAM_025760__ 1329 --------- 1329
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