Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04188 and RBAM_025750
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:35
# Commandline: needle
# -asequence dna-align/BSNT_04188___ysfC.1.9828.seq
# -bsequence dna-align/RBAM_025750___ysfC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04188___ysfC-RBAM_025750___ysfC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04188___ysfC-RBAM_025750___ysfC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04188___ysfC
# 2: RBAM_025750___ysfC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1443
# Identity: 1070/1443 (74.2%)
# Similarity: 1070/1443 (74.2%)
# Gaps: 60/1443 ( 4.2%)
# Score: 3859.0
#
#
#=======================================
BSNT_04188___ 1 ATGA--TCACCAAGGATGTAAAGGAGCAGCTGATTCGGGTC-TCCGGAC- 46
|||| ||||.| ||.|.||| ||.||| |.|| |||||||
RBAM_025750__ 1 ATGATTTCACGA--GAGGCAAA--AGAAGC-------GTTCATCCGGACG 39
BSNT_04188___ 47 -------CAGAAAACTTTGATGACTCGAATGCCGGCCGTCTCGTCTATTC 89
..||.||.|.||||||.||....||.||||||||.||.|||||
RBAM_025750__ 40 GTCGGGAAGGAGAATTATGATGATTCAGCGGCGGGCCGTCTTGTGTATTC 89
BSNT_04188___ 90 ATATGATGCGACGCCTCAGTATCAGTCTATGCCTGATGCCGTGATTGCTC 139
.||||||||..|.||||||...||..|.|||||.|||||.||.||.||.|
RBAM_025750__ 90 TTATGATGCAGCTCCTCAGCTGCAAGCCATGCCGGATGCGGTCATCGCCC 139
BSNT_04188___ 140 CGAGGAATACTGAAGAAGTATCACGCATTTTAACAATTTGCAGCGAACAT 189
|..|.|...|.||.||.||.||.||.||.|||||.|||||||||...|||
RBAM_025750__ 140 CCCGCAGCGCGGATGACGTGTCCCGTATATTAACGATTTGCAGCAGGCAT 189
BSNT_04188___ 190 CGA-GTGCCGATCGTTCCAAGAGGATCAGGGACAAACCTGTGCGGCGGCA 238
|| .|.||||||||.|||||.||.|||||.||||||.|.||||||||||
RBAM_025750__ 190 -GACATTCCGATCGTGCCAAGGGGTTCAGGCACAAACTTATGCGGCGGCA 238
BSNT_04188___ 239 CGTGCCCGACTGAAGGCGGACTTGTGCTTCTCTTTAAGCACATGAACCAG 288
|.||.|||.||||||||||.|||||||||.|.||.||.||.|||||||..
RBAM_025750__ 239 CATGTCCGTCTGAAGGCGGGCTTGTGCTTTTATTCAAACATATGAACCGC 288
BSNT_04188___ 289 ATTCTTGAGATTGATGAAGAAAATTTAACTGCCACAGTTCAGCCGGGCGT 338
|||||.||.||.||||||||||||||.||.||.||.||.|||||||||||
RBAM_025750__ 289 ATTCTAGAAATCGATGAAGAAAATTTGACGGCAACCGTCCAGCCGGGCGT 338
BSNT_04188___ 339 CATTACGTTGGATATGATCCGGGCAGTTGAAAGCAAAGGTTTATTTTATC 388
.||||||...|||||||||||.||.||||||...||||||||||||||||
RBAM_025750__ 339 GATTACGCAAGATATGATCCGTGCGGTTGAACAAAAAGGTTTATTTTATC 388
BSNT_04188___ 389 CGCCTGACCCGAGTTCTATGAAAATATCAACTATCGGGGGCAACATCAAT 438
|||||||.|||||....|||||||||||.||.|||||.||.||.||.|||
RBAM_025750__ 389 CGCCTGATCCGAGCAGCATGAAAATATCGACAATCGGCGGGAATATTAAT 438
BSNT_04188___ 439 GAAAATTCCGGCGGGCTCCGCGGATTAAAATACGGCGTCACCCGCGACTA 488
|||||||||||||||||.|||||.||.||.||||||||||||||.||.||
RBAM_025750__ 439 GAAAATTCCGGCGGGCTGCGCGGTTTGAAGTACGGCGTCACCCGGGATTA 488
BSNT_04188___ 489 TGTTATTGGACTGGAGG-----TTGTGCTCGCAAATGGTGACATCATCCG 533
|||..|.||.||.||.| ||| ||| .|| ||.||.||||||||
RBAM_025750__ 489 TGTCCTCGGCCTTGAAGCCGTCTTG-GCT-TCA---GGCGATATCATCCG 533
BSNT_04188___ 534 CACCGGCGGAAAACTCGCAAAGGATGTGGCCGGATACGACCTCACACGTC 583
|||.||.|||||.||..||||||||||.|||||.||.||.||.||.||.|
RBAM_025750__ 534 CACAGGAGGAAAGCTGACAAAGGATGTCGCCGGTTATGATCTGACCCGGC 583
BSNT_04188___ 584 TTTTTGTCGGCTCAGAAGGAACACTCGGCATTGTGACAGAGGCAATCGTC 633
||||.|||||..|||||||.||.||||||.|||||||.||.||.|...|.
RBAM_025750__ 584 TTTTCGTCGGAGCAGAAGGGACGCTCGGCGTTGTGACGGAAGCGACTTTA 633
BSNT_04188___ 634 AAGCTCGTTCCAAAGCCTGAAACAAAAAAGACGCTGCTTGCCCTATATGA 683
|||||.|||||.|||||.|||||.|||||.|||||||||||.||.|||||
RBAM_025750__ 634 AAGCTGGTTCCGAAGCCGGAAACGAAAAAAACGCTGCTTGCACTCTATGA 683
BSNT_04188___ 684 AAACATCGATGCCGCTGCTCAAACGGTATCAGACATCATTGCCGCAAAAA 733
|.|.||.||.||.|||||..||.||||.||.|.||||||.||.|.|||||
RBAM_025750__ 684 ACATATTGAAGCGGCTGCGGAATCGGTTTCTGCCATCATCGCTGAAAAAA 733
BSNT_04188___ 734 TCATACCCGCCACGCTTGAATTTCTCGACCAGCCTACACTTTTGGTGATT 783
||||.||.||.||.||.||||||||.||.|||||.|||||...|||.|||
RBAM_025750__ 734 TCATTCCGGCGACACTCGAATTTCTGGATCAGCCGACACTGCAGGTCATT 783
BSNT_04188___ 784 GAGGATTATGCCAAAATCGGACTGCCAACAAACGCAAAGGCGGTTCTATT 833
||.|||||.|||||.|||||.||.||.||..|||||||.|||||.||..|
RBAM_025750__ 784 GAAGATTACGCCAAGATCGGGCTTCCGACCGACGCAAAAGCGGTGCTGCT 833
BSNT_04188___ 834 AATTGAGCAAGACGGACCGCTTGAAATC------GTGGCACGGGATATGG 877
.||.||.||.||||| |||.||| ||...|||.|||||||
RBAM_025750__ 834 GATCGAACAGGACGG------TGACATCGAAACGGTCAGACGAGATATGG 877
BSNT_04188___ 878 AAAAGATTGAGGCCATTTGCAAAAAAGGCGACGCCGTTTCCGTTCAGACC 927
||||.||.||.||.|||||.|||||.||.|.||||||.|||||.||.||.
RBAM_025750__ 878 AAAAAATCGAAGCGATTTGTAAAAACGGAGCCGCCGTATCCGTCCAAACG 927
BSNT_04188___ 928 GCACAAACAGAGGAGGAGGCATTCGCCCTGACTGAAGCACGGCGCTCTGC 977
||..||||.|||||.|||||||||||.||.||.||.||..|.||.||.||
RBAM_025750__ 928 GCTGAAACCGAGGAAGAGGCATTCGCGCTTACAGAGGCCAGACGGTCCGC 977
BSNT_04188___ 978 ACTTTCTGCCCTAGCCCGCCTCAAGCCGACGACGATTTTAGAGGATGCGA 1027
|.|.||.|||||.|||||.||.||.|||||.||||||.|.||.|||||||
RBAM_025750__ 978 ATTATCAGCCCTTGCCCGGCTGAAACCGACAACGATTCTGGAAGATGCGA 1027
BSNT_04188___ 1028 CCGTTCCTCGCTCAGAAATCGCCAATATGGTTAAAGCGATTAATGATATT 1077
||||.||..|.|||.||||.||||..|||||.|||||.|||||.||.|||
RBAM_025750__ 1028 CCGTGCCGAGATCACAAATTGCCAGCATGGTCAAAGCCATTAACGAGATT 1077
BSNT_04188___ 1078 GCTGCTAAATATGATATTTCCATCTGCACCTTTGGCCATGCGGGAGACGG 1127
||.|..|.|||||...|.|||||||||||.||.||||||||.||||||||
RBAM_025750__ 1078 GCAGAAACATATGGCCTGTCCATCTGCACATTCGGCCATGCCGGAGACGG 1127
BSNT_04188___ 1128 GAACCTTCACCCGACATGCACGACAGACATAAGAAATGAGGATGAAATGG 1177
.|||||.||.|||||.|||||.||.||.||..|||||...||.||.||||
RBAM_025750__ 1128 CAACCTCCATCCGACGTGCACCACCGATATCCGAAATACAGAGGAGATGG 1177
BSNT_04188___ 1178 AGCGTGTCGAACAGGCCTTTGCCGAGATTTTTGAGAAAGCGATTGAACTT 1227
|.|||||||||.|.||.|||||||..||||||||.|||||||||||.||.
RBAM_025750__ 1178 AACGTGTCGAAAAAGCTTTTGCCGCCATTTTTGAAAAAGCGATTGAGCTG 1227
BSNT_04188___ 1228 GGCGGGACGATAACCGGAGAGCACGGAGTCGGGGCA--ATGAAAGCGCCT 1275
||||||||||||||.||.||.|||||.||| |||| .|.||||||||.
RBAM_025750__ 1228 GGCGGGACGATAACGGGTGAACACGGGGTC--GGCATCGTAAAAGCGCCG 1275
BSNT_04188___ 1276 TACTTGGAGATGAAGTTGAAAAAAGAAGGCATTGATGCGATGAAAGCGTT 1325
||.||.||.|||||..||||||.||||||||||...||.|||||||||.|
RBAM_025750__ 1276 TATTTAGAAATGAAACTGAAAACAGAAGGCATTACCGCCATGAAAGCGAT 1325
BSNT_04188___ 1326 GAAAGCGGCATTTGACCCCCGGAACATAT--TAAATCCGGGCAAAGTGTT 1373
.|||...||..||||.||| .||.||.| |.||||||||.|||.|.||
RBAM_025750__ 1326 CAAACAAGCGCTTGATCCC--AAAAATCTGCTGAATCCGGGAAAAATATT 1373
BSNT_04188___ 1374 TGCGAA-AGATGCCAGAAAACGTGTGGTGGCG--GAAAGATGA 1413
.||.|| ..|| |.||.|||||.|||||||.| ||| ||||
RBAM_025750__ 1374 CGCCAATTCAT-CAAGGAAACGCGTGGTGGTGATGAA--ATGA 1413
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