Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04174 and RBAM_025680

See Amino acid alignment / Visit BSNT_04174 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:34
# Commandline: needle
#    -asequence dna-align/BSNT_04174___yshA.1.9828.seq
#    -bsequence dna-align/RBAM_025680___yshA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04174___yshA-RBAM_025680___yshA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04174___yshA-RBAM_025680___yshA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04174___yshA
# 2: RBAM_025680___yshA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 258
# Identity:     222/258 (86.0%)
# Similarity:   222/258 (86.0%)
# Gaps:           0/258 ( 0.0%)
# Score: 966.0
# 
#
#=======================================

BSNT_04174___      1 TTGTCTGACGGCAAAAAAACAAAAACAACCGTTGACATTTACGGCCAGCA     50
                     ||||||||||||||||||||.|||||.||.||..||||||||||||||||
RBAM_025680__      1 TTGTCTGACGGCAAAAAAACCAAAACGACAGTAAACATTTACGGCCAGCA     50

BSNT_04174___     51 CTTCACGATTGTCGGTGAAGAAAGCAGAGCCCATATGAGGTATGTCGCCG    100
                     ||||||.|||.||||.||||||||||.|||.||.|||.|..||||.||||
RBAM_025680__     51 CTTCACCATTATCGGGGAAGAAAGCAAAGCGCACATGCGCCATGTGGCCG    100

BSNT_04174___    101 GAATTGTTGATGATAAAATGAGAGAAATCAATGAAAAAAATCCATACCTT    150
                     ||.|.|||||||||||||||||||||||||||||.|||||||||||.|||
RBAM_025680__    101 GAGTGGTTGATGATAAAATGAGAGAAATCAATGAGAAAAATCCATATCTT    150

BSNT_04174___    151 GATATAAATAAACTTGCAGTGCTGACAGCGGTAAATGTGGTGCACGATTA    200
                     |||||||||||.||.||.||..||||.|||||.|||||.|||||.|||||
RBAM_025680__    151 GATATAAATAAGCTCGCTGTATTGACTGCGGTCAATGTCGTGCATGATTA    200

BSNT_04174___    201 TGTCAAATTACAAGAGAAATGTGAAAAACTGGAGCGGCAGCTTAAAGAAA    250
                     |.|.|||.|.|||||.||||.|||||.|||||||||||||||||||||||
RBAM_025680__    201 TATGAAACTGCAAGAAAAATATGAAATACTGGAGCGGCAGCTTAAAGAAA    250

BSNT_04174___    251 AGGATTGA    258
                     ||||.|||
RBAM_025680__    251 AGGAATGA    258


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