Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04168 and RBAM_025620
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:33
# Commandline: needle
# -asequence dna-align/BSNT_04168___lcfA.1.9828.seq
# -bsequence dna-align/RBAM_025620___lcfA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04168___lcfA-RBAM_025620___lcfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04168___lcfA-RBAM_025620___lcfA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04168___lcfA
# 2: RBAM_025620___lcfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1727
# Identity: 1293/1727 (74.9%)
# Similarity: 1293/1727 (74.9%)
# Gaps: 82/1727 ( 4.7%)
# Score: 4783.5
#
#
#=======================================
BSNT_04168___ 1 ATGCAGTCTCAAAAGCCGTGGCTTGCCGAGTATCCCAACGATATCCCGCA 50
|||||||||.|||||||.||||||.|..|.||||||.|.||.||.|||||
RBAM_025620__ 1 ATGCAGTCTGAAAAGCCATGGCTTTCTCAATATCCCGAAGAGATTCCGCA 50
BSNT_04168___ 51 TGAGCTTCCG---TTGCCGAATAAAACCCTGCAATCCATCCTGACAGACT 97
||||||| | ||.||| ||.|||||||||.|||||..||||||.|||
RBAM_025620__ 51 TGAGCTT--GAATTTACCG-ATCAAACCCTGCCATCCAATCTGACAAACT 97
BSNT_04168___ 98 CCGCCGCACGATTCCCTGATAAAACCGCAATATCGTTTTAT-GGAAAAAA 146
||||.||.|.||||||..|..|.|||||.|| |..||||.| ||||||||
RBAM_025620__ 98 CCGCAGCCCAATTCCCGAACCATACCGCCAT-TTATTTTCTCGGAAAAAA 146
BSNT_04168___ 147 ACTCACCTTTCATGACATTCTGACGGATGCTC-TTAAA-CTTGCAGCTTT 194
||||||.||.||.|||.||||.||.||| || ||||| ||.||.|||||
RBAM_025620__ 147 ACTCACATTCCAGGACGTTCTCACAGAT--TCGTTAAAGCTAGCCGCTTT 194
BSNT_04168___ 195 TTTGCAGGGCAA---TGGCCTGCAAAAAGGAGACAGAGTGGCTGTTATGC 241
|||.| |||| .||||||.|||||||.|||||||..||..||||||
RBAM_025620__ 195 TTTAC---GCAAAACAGGCCTGAAAAAAGGTGACAGAGCCGCCATTATGC 241
BSNT_04168___ 242 TGCCCAATTGCCCGCAAACAGTGATTTCTTATTATGGCGTCTTGTTTGCC 291
||||||||||.|||||..|.||.||..|||.|||.|||||.|||||||||
RBAM_025620__ 242 TGCCCAATTGTCCGCAGTCGGTCATCGCTTTTTACGGCGTATTGTTTGCC 291
BSNT_04168___ 292 GGTGGCATCGTGGTGCAGACGAATCCGCTTTATACCGAGCACGAGCTTGA 341
||.|||||.||.||.|||||.|||||.||.||.||.||.|||||||||||
RBAM_025620__ 292 GGCGGCATTGTCGTTCAGACCAATCCTCTCTACACGGAACACGAGCTTGA 341
BSNT_04168___ 342 ATACCAGCTTAGAGA---TGCTCAGGTAAGTGTAATCATCACCTTAGATT 388
.||.|||||.|.||| |||.|.| .|.||.|||||||||.|.|||.
RBAM_025620__ 342 GTATCAGCTGAAAGACAGTGCGCCG---CGCGTGATCATCACCCTTGATA 388
BSNT_04168___ 389 TGCTTTTCCCGAAGGCAATAAAAATGAAAACGTTATCAATAGTCGACCAG 438
||||.||.|||||||..|||||||||||||||||||||.|.|||||.|..
RBAM_025620__ 389 TGCTGTTTCCGAAGGTGATAAAAATGAAAACGTTATCACTCGTCGAACGC 438
BSNT_04168___ 439 ATTTTGATAACCAGCGTAAAAGACTATTTGCCTTTTCCGAAGAATATTCT 488
|||.|.|.|||.||..|||||||||.||||||.||||||||.|||||.||
RBAM_025620__ 439 ATTATTACAACGAGTATAAAAGACTTTTTGCCGTTTCCGAAAAATATGCT 488
BSNT_04168___ 489 TTACCCGCTGACGCAAAAACAAAAAGTGCATATCGACTTTGACAAAACAG 538
.||..|.||.|||||||||||..|.||.|||||.||.|.||||..| .|
RBAM_025620__ 489 GTATACACTCACGCAAAAACAGCAGGTTCATATTGATTATGACGGA--TG 536
BSNT_04168___ 539 CTAAC--ATTCACACGTTCGCTTCCAGTATGAAGCAGG-------AAAAA 579
|.||| |||||||..||.|| || |||||
RBAM_025620__ 537 CGAACAAATTCACAAATTAGC---------------GGATATTTTAAAAA 571
BSNT_04168___ 580 ACTGAACTCCTGACAATCCCGA--------AGATCGATCCTGAGCATGAT 621
||..||...|.||..|..|.|| |.||.||.||||.||||||.
RBAM_025620__ 572 ACGAAAGAGCGGAGGAGGCAGAGCCATTTGATATTGACCCTGCGCATGAC 621
BSNT_04168___ 622 ATCGCTGTCCTCCAGTATACCGGAGGAACAACCGGAGCTCCAAAAGGGGT 671
|||||.||.||.||.||.||.||.|||||||||||...|||.|||||.||
RBAM_025620__ 622 ATCGCCGTGCTTCAATACACGGGCGGAACAACCGGCTATCCGAAAGGCGT 671
BSNT_04168___ 672 CATGCTCACGCACCAAAATATTTTGGCAAATACTGAAATGTGCGCCGCTT 721
|||||||||.||||..||.|||..|||.|||||.||||||||||||||.|
RBAM_025620__ 672 CATGCTCACACACCGGAACATTCAGGCTAATACAGAAATGTGCGCCGCCT 721
BSNT_04168___ 722 GGATGTATGACGTGAAAGAAGGCGCTGAAAAAGTGCTGGGCATCGTCCCG 771
|||||||..|..|||||.|.||.||.|||||.|||||.||||||||.||.
RBAM_025620__ 722 GGATGTACAAAATGAAAAAGGGAGCCGAAAAGGTGCTCGGCATCGTGCCT 771
BSNT_04168___ 772 TTTTTTCATGTCTACGGACTGACGGCAGTCATGAACTATTCGATTAAACT 821
|||||||||||.||||||.||||.||.||..|.||.|.|||.||||..|.
RBAM_025620__ 772 TTTTTTCATGTGTACGGATTGACCGCCGTGCTCAATTTTTCCATTATGCA 821
BSNT_04168___ 822 AGGCTTCGAAATGATTCTTCTTCCTAAGTTTGATCCGCTCGAAACACTTA 871
.||.|..||||||||.|||||||||||.|||.||||..|.||.||.||.|
RBAM_025620__ 822 GGGATGTGAAATGATCCTTCTTCCTAAATTTAATCCTTTGGATACCCTGA 871
BSNT_04168___ 872 AAATCATCGACAAACACAAACCGACGCTCTTTCCTGGCGCACCGACAATT 921
|||..|||||||..|..||.||||||.|.|||||.||.||||||||.|||
RBAM_025620__ 872 AAACAATCGACAGGCTGAAGCCGACGGTTTTTCCCGGGGCACCGACGATT 921
BSNT_04168___ 922 TACATTGGCCTTTTGCATCACCCCGAATTGCAGCATTATGATCTGTCATC 971
|||||.||.||.|||||||||||.||..||.|..|.||||||.||||.||
RBAM_025620__ 922 TACATCGGGCTGTTGCATCACCCGGAGCTGAATAAGTATGATTTGTCCTC 971
BSNT_04168___ 972 CATTAAAAGCTGTCTTAGCGGATCAGCCGCGCTCCCTGTGGAGGTAAAGC 1021
||||.|||||||||..|||||.|||||.|||||.||.||.|||||.||.|
RBAM_025620__ 972 CATTGAAAGCTGTCCGAGCGGTTCAGCGGCGCTGCCGGTTGAGGTCAAAC 1021
BSNT_04168___ 1022 AGAAATTTGAAAAGGTGACTGGCGGAAAGCTTGTGGAAGGCTATGGTTTG 1071
|||||||||||||.|||||.||.||||||||||||||||||||.||.||.
RBAM_025620__ 1022 AGAAATTTGAAAAAGTGACCGGAGGAAAGCTTGTGGAAGGCTACGGATTA 1071
BSNT_04168___ 1072 TCTGAGGCATCCCCAGTGACGCACGCCAATTTTATCTGGGGAAAAAACAA 1121
||.||.|||||.||.||.||.||..|.||.||.||||||||||||||.||
RBAM_025620__ 1072 TCCGAAGCATCACCGGTTACCCATTCAAACTTCATCTGGGGAAAAAATAA 1121
BSNT_04168___ 1122 GCCGGGCAGTATCGGCTGTCCTTGGCCAAGTACGGACGCTGCGATCTATT 1171
.||.||.||.|||||||||||.|||||.|.|||.||.||.|..|||||||
RBAM_025620__ 1122 ACCCGGTAGCATCGGCTGTCCCTGGCCCAATACCGATGCCGGAATCTATT 1171
BSNT_04168___ 1172 CTGAAGAGACGGGTGAGCTTGCCGCTCCGTATGAGCATGGAGAAATCATT 1221
|.|||||.|..||.|.||||||.|..|||||||||||.||.||..|.||.
RBAM_025620__ 1172 CAGAAGAAAAAGGCGGGCTTGCGGGGCCGTATGAGCACGGCGAGCTGATC 1221
BSNT_04168___ 1222 GTAAAAGGTCCGCAAGTCATGAAAGGATACTGGAATAAACCAGAGGAAAC 1271
||||||||.||.||.|||||||||||||||||||||||.|..|||||.||
RBAM_025620__ 1222 GTAAAAGGCCCTCAGGTCATGAAAGGATACTGGAATAAGCAGGAGGAGAC 1271
BSNT_04168___ 1272 CGCCGCAGTG--CTGAGAGATGGCTGGCTGTTCACCGGGGACATGGGCTA 1319
|| ||| ||| .|.|||||.|||||||||||.|||||.||.|||||.||
RBAM_025620__ 1272 CG-CGC-GTGTCATCAGAGACGGCTGGCTGTTTACCGGAGATATGGGATA 1319
BSNT_04168___ 1320 TATGGATGAAGAAGGCTTTTTCTATATTGCTGACAGGAAGAAGGATATCA 1369
|||||||||.|||||.||||||||.||.||.||||||||.||.||.||||
RBAM_025620__ 1320 TATGGATGAGGAAGGATTTTTCTACATCGCCGACAGGAAAAAAGACATCA 1369
BSNT_04168___ 1370 TCATTGCCGGCGGTTACAATATTTACCCGCGTGAGGTAGAAGAAGCGCTT 1419
|||||||||||||.|||||.||||||||.||.|||||.||.||.||||||
RBAM_025620__ 1370 TCATTGCCGGCGGATACAACATTTACCCCCGGGAGGTGGAGGAGGCGCTT 1419
BSNT_04168___ 1420 TATGAACATGAAGCCATACAGGAAATTGTTGTTGCAGGCGTTCCCGATTC 1469
|||||.|||||||||.|.||||||||.||.||.||.|||||.||.|||||
RBAM_025620__ 1420 TATGAGCATGAAGCCGTTCAGGAAATCGTCGTAGCGGGCGTCCCTGATTC 1469
BSNT_04168___ 1470 CTACAGGGGAGAAACAGTAAAAGCATTTGTCGTATTAAAGAAAGGCGCAA 1519
||||||.||.|||||.||.|||||||||.||||.||.||.||||||||..
RBAM_025620__ 1470 CTACAGAGGGGAAACGGTGAAAGCATTTATCGTTTTGAAAAAAGGCGCCG 1519
BSNT_04168___ 1520 AAGCCGATGCAGAAGAACTGGACGCTTTTGCGAGATCACGTCTAGCTCCC 1569
|.||.|||||.||.||.||.||.||.|||||.|||...||.||.||.||.
RBAM_025620__ 1520 AGGCAGATGCCGATGAGCTTGATGCGTTTGCAAGAGAGCGGCTTGCGCCG 1569
BSNT_04168___ 1570 TATAAGGTGCCCAAAGC-CTATGACTTCAGAAAGGAGTTGCCGAAAACGG 1618
||.||.|| |||.|||| .||.||.||||||||.|||.|.||||||||||
RBAM_025620__ 1570 TACAAAGT-CCCGAAGCTTTACGAATTCAGAAAAGAGCTTCCGAAAACGG 1618
BSNT_04168___ 1619 CGGTGGGAAAAATTTTAAGAAGGCGTTTACTTGAAGAAGAAACCGAAAAT 1668
|.||.||||||||.|||||||||||||||.|.||||| .|||.||
RBAM_025620__ 1619 CCGTCGGAAAAATATTAAGAAGGCGTTTAGTCGAAGA------GGAAGAT 1662
BSNT_04168___ 1669 -CATCATAT-CAAATAA---------- 1683
|.||.|.| .||||||
RBAM_025620__ 1663 GCTTCCTGTGAAAATAAGGTGCCTTAA 1689
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