Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04166 and RBAM_025600

See Amino acid alignment / Visit BSNT_04166 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:33
# Commandline: needle
#    -asequence dna-align/BSNT_04166___ysiB.1.9828.seq
#    -bsequence dna-align/RBAM_025600___ysiB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04166___ysiB-RBAM_025600___ysiB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04166___ysiB-RBAM_025600___ysiB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04166___ysiB
# 2: RBAM_025600___ysiB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 793
# Identity:     605/793 (76.3%)
# Similarity:   605/793 (76.3%)
# Gaps:          29/793 ( 3.7%)
# Score: 2222.5
# 
#
#=======================================

BSNT_04166___      1 ATGAATGCA--ATATCACTGGCAGTTGATCAATTTGTGGCAGTTTTGACG     48
                     |||||  ||  .|.||..||||.||.||.||||.|||.||.||..|.||.
RBAM_025600__      1 ATGAA--CAGCCTTTCGATGGCGGTAGAACAATCTGTTGCGGTGATCACC     48

BSNT_04166___     49 ATTCACAATCCGCCGGCAAATGCGCTTTCCAG-CCGGATATTAGAAGAGC     97
                     |||.|..|||.||||||.||.|||||.|||.| .||| |.|||||.|||.
RBAM_025600__     49 ATTAATCATCAGCCGGCCAACGCGCTGTCCGGTGCGG-TTTTAGACGAGT     97

BSNT_04166___     98 TGTCTTCCTGTC---TTGATCAATGTGAGACAGATG-CAGGCGTACGAAG    143
                     ||   |||.|||   |.||.|.||||||.||||||| || ||||..||||
RBAM_025600__     98 TG---TCCGGTCTGTTCGACCGATGTGAAACAGATGACA-GCGTCAGAAG    143

BSNT_04166___    144 CATTATCATTCACGGCGAGGGAAGATTTTTCTCAGCCGGCGCTGATATTA    193
                     |||.|||||||.|||.|||||.|.|||||||||.||.|||||.|||||.|
RBAM_025600__    144 CATCATCATTCGCGGTGAGGGGAAATTTTTCTCGGCGGGCGCCGATATAA    193

BSNT_04166___    194 AAGAATTTACATCGCTTAAAGGCAA---TGAGGATTCCTCATTGC--TCG    238
                     |.||||||||.||||||.||   ||   ||||.|.||.||  |||  |.|
RBAM_025600__    194 AGGAATTTACGTCGCTTGAA---AAACTTGAGCAATCTTC--TGCCATGG    238

BSNT_04166___    239 CTGAGCGCGGCCAGCAGTTAATGGAGAGAATCGAAAGCTTTCCAAAACCG    288
                     |.||....|||||||||.|.|||||.|||||.|||.|.|||||.||.||.
RBAM_025600__    239 CGGATAAAGGCCAGCAGCTGATGGAAAGAATTGAAGGGTTTCCGAAGCCC    288

BSNT_04166___    289 ATTATCGCAGCGATTCACGGCGCTGCTCTCGGAGGCGGGCTGGAGCTTGC    338
                     .|||||||||||||||||||||||||.|||||||||||.||.|||||.||
RBAM_025600__    289 GTTATCGCAGCGATTCACGGCGCTGCGCTCGGAGGCGGTCTTGAGCTAGC    338

BSNT_04166___    339 GATGGCCTGTCATATCAGAATTGCAACAGTAGATGCTAAGCTGGGGCTCC    388
                     .||||||||.|||||||||||.||.|||.|||||||.|||||.||.||.|
RBAM_025600__    339 CATGGCCTGCCATATCAGAATCGCTACATTAGATGCAAAGCTCGGCCTGC    388

BSNT_04166___    389 CGGAGCTTAATCTCGGTATCATTCCGGGTTTTGCGGGGACACAGCGCCTT    438
                     |.|||||.||||||||.||.||||||||.|||||.|||||.|||||.|||
RBAM_025600__    389 CCGAGCTGAATCTCGGCATTATTCCGGGCTTTGCCGGGACGCAGCGGCTT    438

BSNT_04166___    439 CCGAGATATGTCGGCACAGCCAAAGCATTAGAGCTCATCGGATCAGGAGA    488
                     ||..|.||.|||||.||.||.|||||..|.||..|.|||||..|...|||
RBAM_025600__    439 CCCCGGTACGTCGGTACGGCGAAAGCGCTTGAAATGATCGGCACTTCAGA    488

BSNT_04166___    489 ACCGATATCCGGAAAAGAAGCGCTTGATCTCGGACTTGTCTCAATTGGAG    538
                     |||..|..|||||.||||||||||....|||||.||||||.|..|.||.|
RBAM_025600__    489 ACCTGTGACCGGAGAAGAAGCGCTCAGCCTCGGTCTTGTCACGGTAGGCG    538

BSNT_04166___    539 CGAAAGATGAGGCAGAAGTGATTGAAAAA-GCAAAAGCACTTGCCGCTAA    587
                     |..||.||||||.|||..|| .||||||| ||.|||.|.||.||.|..||
RBAM_025600__    539 CCGAACATGAGGAAGAGCTG-CTGAAAAAGGCGAAAACGCTCGCGGGCAA    587

BSNT_04166___    588 GTTTGCAGAGAAAAGCCCGCAAACGCTGGCATCTTTGCTTGAACTTCTCT    637
                     ||||||.||.|||||||||||..||.||||.|||.|||||||.||.||.|
RBAM_025600__    588 GTTTGCGGAAAAAAGCCCGCAGTCGATGGCTTCTCTGCTTGAGCTCCTTT    637

BSNT_04166___    638 ATTCCAACAAGGTGTATTCCTATGAAGGCAGCTTAAAGCTTGAAGCAAAG    687
                     ||||.||||||.|.|||||.|||||.|||.||||||||||||||||||||
RBAM_025600__    638 ATTCAAACAAGATCTATTCTTATGACGGCGGCTTAAAGCTTGAAGCAAAG    687

BSNT_04166___    688 CGATTTGGGGAAGCATTTGAGTCAGAGGACGCCAAGGAAGGCATCCAGGC    737
                     ||.||||||||||||||||..|||||.|||||.||.||||||||.|||||
RBAM_025600__    688 CGTTTTGGGGAAGCATTTGCATCAGATGACGCAAAAGAAGGCATTCAGGC    737

BSNT_04166___    738 ATTTCTCGAAAAAAGAAAGCCTCAGTTC-AAAGGCGA--ATAA    777
                     ||||||||||||||||||||||||.||| ...|||||  ||||
RBAM_025600__    738 ATTTCTCGAAAAAAGAAAGCCTCAATTCGGTGGGCGAAGATAA    780


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04166 and RBAM_025600

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
