Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04156 and RBAM_025550
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:32
# Commandline: needle
# -asequence dna-align/BSNT_04156___uvrC.1.9828.seq
# -bsequence dna-align/RBAM_025550___uvrC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04156___uvrC-RBAM_025550___uvrC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04156___uvrC-RBAM_025550___uvrC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04156___uvrC
# 2: RBAM_025550___uvrC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1782
# Identity: 1461/1782 (82.0%)
# Similarity: 1461/1782 (82.0%)
# Gaps: 18/1782 ( 1.0%)
# Score: 5979.5
#
#
#=======================================
BSNT_04156___ 1 ATGAACAAACAACTGAAAGAAAAACTCGCCCTCCTTCCTGATCAACCGGG 50
|||||.|||||||||||||||||.||.|||||||||||.|||||.|||||
RBAM_025550__ 1 ATGAATAAACAACTGAAAGAAAAGCTGGCCCTCCTTCCCGATCAGCCGGG 50
BSNT_04156___ 51 TTGTTATCTTATGAAGGACCGGCAGCAGACTGTGATCTACGTAGGGAAAG 100
.||||||.|.|||||.|||||.||..|.||.||.||||||||.|||||||
RBAM_025550__ 51 CTGTTATTTAATGAAAGACCGTCAAAAAACAGTCATCTACGTGGGGAAAG 100
BSNT_04156___ 101 CAAAAGTGCTGAAAAACAGAGTGCGCTCCTACTTCACCGGTTCTCACGAC 150
|.|||||..||||||||||.|||||.||.||.||||||||||||||||||
RBAM_025550__ 101 CGAAAGTCTTGAAAAACAGGGTGCGATCTTATTTCACCGGTTCTCACGAC 150
BSNT_04156___ 151 GCGAAAACCCAAAGGCTTGTGACGGAAATCGAGGATTTTGAATATATCGT 200
||.|||||||||.||||||||.||||.||.|||||.||||||||||||||
RBAM_025550__ 151 GCAAAAACCCAACGGCTTGTGTCGGAGATTGAGGACTTTGAATATATCGT 200
BSNT_04156___ 201 GACGTCCTCCAATCTTGAAGCGCTTATTTTAGAAATGAATCTGATCAAAA 250
|||.||||||||||||||||||||||||||.||||||||||||||.||||
RBAM_025550__ 201 GACTTCCTCCAATCTTGAAGCGCTTATTTTGGAAATGAATCTGATTAAAA 250
BSNT_04156___ 251 AGCATGATCCGAAATACAACGTCATGCTCAAAGACGACAAAACCTATCCT 300
|..|.||||||||||||||.||||||||.|||||.||.|||||||||||.
RBAM_025550__ 251 AATACGATCCGAAATACAATGTCATGCTGAAAGATGATAAAACCTATCCC 300
BSNT_04156___ 301 TTCATAAAACTCACCCATGAACGCCACCCAAGGCTAATTGTCACCCGCAA 350
||.||.|||.||||||||||||||||.||..||||.|||||||||||.||
RBAM_025550__ 301 TTTATTAAAATCACCCATGAACGCCATCCGCGGCTGATTGTCACCCGGAA 350
BSNT_04156___ 351 TGTCAAAAAAGACAAAGGGCGCTATTTCGGGCCGTATCCGAATGTACAGG 400
||||||||||||||||||.|||||||||||.||||||||||||||.||||
RBAM_025550__ 351 TGTCAAAAAAGACAAAGGACGCTATTTCGGCCCGTATCCGAATGTGCAGG 400
BSNT_04156___ 401 CAGCAAGGGAAACAAAAAAACTGCTCGACCGTCTGTATCCTCTCAGAAAA 450
|.||..|||||||.|||||||||||.|||||.||.||.||.|||||.|||
RBAM_025550__ 401 CGGCGCGGGAAACGAAAAAACTGCTGGACCGCCTTTACCCGCTCAGGAAA 450
BSNT_04156___ 451 TGCTCCAAGCTCCCGGACAGAGTGTGCCTTTACTATCATCTGGGCCAATG 500
|||||.|||||.||||||.|.||.||.||.||.||||||||.||.|||||
RBAM_025550__ 451 TGCTCAAAGCTTCCGGACCGCGTCTGTCTCTATTATCATCTCGGACAATG 500
BSNT_04156___ 501 CCTCGCTCCGTGTGTAAAGGATATTTCCGAAGAGACGAACAGAGAGCTGG 550
|||.||.||.||||||||||||||.||.||.|||||.|||.|.|||.|.|
RBAM_025550__ 501 CCTTGCCCCATGTGTAAAGGATATATCTGAGGAGACAAACCGCGAGATTG 550
BSNT_04156___ 551 TTGAAAGCATTACACGTTTCTTAAGGGGCGGCTATAATGAGGTCAAAAAA 600
|||||..||||||.|||||.||||.|||.||..||||.||..||||||||
RBAM_025550__ 551 TTGAAGACATTACCCGTTTTTTAAAGGGAGGGCATAACGAAATCAAAAAA 600
BSNT_04156___ 601 GAGCTTGAAGAGAAAAT-GCATGAAGCTGCTGAGAATCTTGAGTTTGAAC 649
|||||.||||.|||||| ||| |||||.||.||.||.|||||.|||||||
RBAM_025550__ 601 GAGCTCGAAGCGAAAATGGCA-GAAGCGGCGGAAAAGCTTGAATTTGAAC 649
BSNT_04156___ 650 GAGCAAAAGAGCTTCGTGACCAAATTGCCCATATTGAATCAACGATGGAA 699
|.||.|||||..|.||.|||||..||||.||.||.|||||.||||||||.
RBAM_025550__ 650 GGGCTAAAGAATTCCGCGACCAGCTTGCTCACATCGAATCGACGATGGAG 699
BSNT_04156___ 700 AAACAAAAAATGACGATGAACGATCTAGTCGACCGTGATGTATTCGCGTA 749
||.|||||||||||.|||||.||.||..|.|||||.|||||.||.||.||
RBAM_025550__ 700 AAGCAAAAAATGACCATGAATGACCTTCTGGACCGCGATGTGTTTGCATA 749
BSNT_04156___ 750 CGCGTACGATAAGGGCTGGATGTGCGTGCAGGTCTTTTTCATCCGCCAAG 799
.||.||||||||.||||||||||||||.||.|||||||||||.|||||||
RBAM_025550__ 750 TGCCTACGATAAAGGCTGGATGTGCGTCCAAGTCTTTTTCATACGCCAAG 799
BSNT_04156___ 800 GAAAGCTCATTGAACGCGATGTCAGCATGTTCCCGCTTTATCAGGAAGCA 849
||||.||.||.||||||||.|||||||||||.|||.|.|||||||||||.
RBAM_025550__ 800 GAAAACTGATCGAACGCGACGTCAGCATGTTTCCGATGTATCAGGAAGCG 849
BSNT_04156___ 850 GATGAAGAGTTCCTCACGTTCATCGGGCAGTTCTATTCAAAAAACAACCA 899
||||||||.||.||.||.||||||||.||||||||.||.||||||||.||
RBAM_025550__ 850 GATGAAGAATTTCTGACCTTCATCGGCCAGTTCTACTCTAAAAACAATCA 899
BSNT_04156___ 900 CTTCCTTCCGAAGGAGATTTTAGTTCCGGACAGCGTAGATCA---ATCCA 946
|||.||.||.|||||.|||.|.||.||.||||||||.|| || | ||
RBAM_025550__ 900 CTTTCTGCCTAAGGAAATTCTGGTGCCTGACAGCGTTGA-CAGGGA--CA 946
BSNT_04156___ 947 TGATCGAGC-AGCTGCTGGAAACAAACGTTCACCAGCCGAAGAAAGGCCC 995
||||| |.| |||||.|||||||...|||.||.||||||||.||||||||
RBAM_025550__ 947 TGATC-ACCGAGCTGTTGGAAACCGCCGTGCATCAGCCGAAAAAAGGCCC 995
BSNT_04156___ 996 GAAAAAAGAACTGCTCATGCTTGCCCATAAAAATGCGAAAATCGCATTGA 1045
|||||||||.|||||..|||||||.||.|||||||||||||||||..||.
RBAM_025550__ 996 GAAAAAAGAGCTGCTTTTGCTTGCGCACAAAAATGCGAAAATCGCTCTGC 1045
BSNT_04156___ 1046 AAGAAAAATTCTCTTTAATCGAACGGGACGAGGAGCGTTCAATCGGGGCA 1095
..|||||||||||.||||||||.|||||.|||||.||.||||||||.|||
RBAM_025550__ 1046 GGGAAAAATTCTCGTTAATCGAGCGGGATGAGGAACGGTCAATCGGTGCA 1095
BSNT_04156___ 1096 GTGCAGAA--ACTAGGTGAGGCATTAAATATTTATACGCCGCACAGAATT 1143
||.||| .||.||.||.||..|.|||||||||||||||||..|.|||
RBAM_025550__ 1096 --GCCGAACGGCTCGGCGAAGCGCTGAATATTTATACGCCGCATCGGATT 1143
BSNT_04156___ 1144 GAAGCGTTTGATAACTCAAACATACAGGGGACAAACCCGGTTTCTGCGAT 1193
|||||||||||.|||||.||.||.||.||.||||||||.||.||.||.||
RBAM_025550__ 1144 GAAGCGTTTGACAACTCCAATATTCAAGGCACAAACCCCGTATCGGCCAT 1193
BSNT_04156___ 1194 GATTGTGTTTATCGATGGCAAACCATACAAAAAGGAATACCGCAAATATA 1243
|||.||.|||||.||.||.|||||..|.||||||||||||||||||||||
RBAM_025550__ 1194 GATCGTCTTTATTGACGGAAAACCGAATAAAAAGGAATACCGCAAATATA 1243
BSNT_04156___ 1244 AAATCAAAACCGTTACAGGGCCGGATGATTATGGTTCTATGAGAGAGGTT 1293
||||.||||||||.|||||||||||||||||.||.||.|||||.||.||.
RBAM_025550__ 1244 AAATTAAAACCGTAACAGGGCCGGATGATTACGGCTCAATGAGGGAAGTC 1293
BSNT_04156___ 1294 GTCAGAAGACGCTATACGAGAGTGCTTCGTGAGAATCTGCCGCTGCCCGA 1343
|||||||||.|.||.|||||.|||||.||.||.|||||.||||||||.||
RBAM_025550__ 1294 GTCAGAAGAAGGTACACGAGGGTGCTCCGCGAAAATCTTCCGCTGCCGGA 1343
BSNT_04156___ 1344 TCTGATCATCATTGACGGAGGAAAAGGGCAGATCAACGCAGCAAGGGATG 1393
|.|.||||||||||||||.||||||||||||||.|||||.||..|.||.|
RBAM_025550__ 1344 TTTAATCATCATTGACGGCGGAAAAGGGCAGATTAACGCGGCGCGCGACG 1393
BSNT_04156___ 1394 TCATTGAAAATGAACTCGGCTTGGATATCCCGATCGCCGGTTTAGCGAAA 1443
|..||||.|||||.||||||.|.|||.|||||.|.||.||.||.||||||
RBAM_025550__ 1394 TGCTTGAGAATGAGCTCGGCCTTGATGTCCCGGTAGCGGGATTGGCGAAA 1443
BSNT_04156___ 1444 GATGAAAAACACAGAACCTCAAA--TTTACTGATCGGTGATCCGCTGGAG 1491
|||||.||||||.||||.||.|| ||| |||||||.||.|||||.||.
RBAM_025550__ 1444 GATGATAAACACCGAACATCCAACCTTT--TGATCGGCGACCCGCTTGAA 1491
BSNT_04156___ 1492 GTGGTGTATCTGGAACGAAACAGCCAGGAATTTTACCTCCTGCAGCGCAT 1541
..|||||.||||||.||.||||||||.||.||||||||.||.||||||||
RBAM_025550__ 1492 CCGGTGTTTCTGGAGCGGAACAGCCAAGAGTTTTACCTGCTTCAGCGCAT 1541
BSNT_04156___ 1542 TCAGGACGAGGTGCACCGTTTTGCAATCAGTTTTCACAGGCAAATCCGCG 1591
|||||||||.||.|||||||||||.|||||.||||||||.||.|||||.|
RBAM_025550__ 1542 TCAGGACGAAGTTCACCGTTTTGCGATCAGCTTTCACAGACAGATCCGGG 1591
BSNT_04156___ 1592 GAAAAAGCGCGTTTCAATCCGTTTTGGACGACATCCCGGGTATCGGAGAG 1641
|||||||||..||||||||||||.||||.||.|||||.||.|||||.||.
RBAM_025550__ 1592 GAAAAAGCGTCTTTCAATCCGTTCTGGATGATATCCCCGGAATCGGCGAA 1641
BSNT_04156___ 1642 AAAAGAAAGAAAATGCTGTTAAAGCATTTCGGTTCCGTTAAAAAAATGAA 1691
|||.|.||.||||||||.|||||.||||||||.||.||.|||||.|||||
RBAM_025550__ 1642 AAACGCAAAAAAATGCTCTTAAAACATTTCGGATCTGTCAAAAAGATGAA 1691
BSNT_04156___ 1692 GGAAGCAAGCCTTGAGGACATCAAAAAAGCCGGTGTTCCCGCAGCGGCGG 1741
|||||||||||||||.||.|||||||||||.|||||.||.||.|||||||
RBAM_025550__ 1692 GGAAGCAAGCCTTGACGATATCAAAAAAGCGGGTGTGCCGGCCGCGGCGG 1741
BSNT_04156___ 1742 CTCAGCTCCTTTACGACAAATTGCAAAAATAA 1773
|.|||||.||.|..||.|||||..|||||||.
RBAM_025550__ 1742 CCCAGCTGCTGTTTGAAAAATTAAAAAAATAG 1773
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