Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04146 and RBAM_025490
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:31
# Commandline: needle
# -asequence dna-align/BSNT_04146___ysmA.1.9828.seq
# -bsequence dna-align/RBAM_025490___ysmA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04146___ysmA-RBAM_025490___ysmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04146___ysmA-RBAM_025490___ysmA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04146___ysmA
# 2: RBAM_025490___ysmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 461
# Identity: 333/461 (72.2%)
# Similarity: 333/461 (72.2%)
# Gaps: 40/461 ( 8.7%)
# Score: 1190.0
#
#
#=======================================
BSNT_04146___ 1 ATGAAGCTTCCCGC-TTATATTGATATGCCGTTTCAAGAATGGAAAACA- 48
|||||.| ..|||| .|||||||||||.||||||.|||||||| |.|||
RBAM_025490__ 1 ATGAAAC-AACCGCAATATATTGATATCCCGTTTGAAGAATGG-AGACAG 48
BSNT_04146___ 49 TCCTTTTCTTTTTTCAATGAGGTATCCGTAAGATTTTCCGAGACAGACAT 98
||.||||||||.||.|.|||.|||||.||..|.|||||.||.||.||.||
RBAM_025490__ 49 TCGTTTTCTTTCTTTACTGAAGTATCGGTTCGTTTTTCAGAAACGGATAT 98
BSNT_04146___ 99 GTTTGGGCATATGAATAATGTAACCCCTTTTATATATTTTGAGGAGGCGC 148
|||.||.|||||||||||||||||||||||.||.|||||||||||.||||
RBAM_025490__ 99 GTTCGGCCATATGAATAATGTAACCCCTTTCATCTATTTTGAGGAAGCGC 148
BSNT_04146___ 149 GGATTTCTTATTTTAAAAAGCTGAATATGATGAGTGAAAAC------AAA 192
||||..|||||||.|||.||| |||..|.||| |||
RBAM_025490__ 149 GGATCGCTTATTTCAAACAGC----------GAGGCATAACGGCGCAAAA 188
BSNT_04146___ 193 C----AGACCATGACAGTCGTGGCAAGCCAGCAATGCGATTATTTGCGCC 238
| |.||.|||||.|||||.|||||||||||.|||||.|||.||||.|
RBAM_025490__ 189 CTCGGAAACGATGACGGTCGTCGCAAGCCAGCAGTGCGACTATATGCGTC 238
BSNT_04146___ 239 AAGTCATGCCTTATGAAGAGTTGCGCATCTATGTGAAAACAAGCACAGTC 288
|.||.|||||.||||||.|..||||.||.|||||||||.|||||.|.|.|
RBAM_025490__ 239 AGGTGATGCCGTATGAAAATCTGCGGATTTATGTGAAAGCAAGCGCTGCC 288
BSNT_04146___ 289 GGCAGTTCATCTCTTACCTTGCACTATCTCGGAGA----GAACCGCGAAG 334
||.|.|.|.||..|.|||.|.||.||.||.||||| ||..|| |
RBAM_025490__ 289 GGAAATGCGTCCGTCACCCTTCATTACCTTGGAGAAAATGAGTCG----G 334
BSNT_04146___ 335 GCGAGCCCTGCTTCACCGGGGCAGTCGTGATGGTTCAAGTCTCAAAGGAA 384
||..|||.|||||.||.||..|.|||||.|||||||||||.||.|||.||
RBAM_025490__ 335 GCCTGCCGTGCTTTACGGGTTCTGTCGTTATGGTTCAAGTGTCGAAGAAA 384
BSNT_04146___ 385 AGCGGCAAAGCTGTCAGCTGGACGGATGAGGAGAAAGAAACGC-TTCTTC 433
|||||||||||.||||||||||||||...|||||||| || ||||.|
RBAM_025490__ 385 AGCGGCAAAGCGGTCAGCTGGACGGAGCGGGAGAAAG----GCATTCTGC 430
BSNT_04146___ 434 ATACACGATAA 444
...|..||
RBAM_025490__ 431 TCGCCTGA--- 438
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