Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04146 and RBAM_025490

See Amino acid alignment / Visit BSNT_04146 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:31
# Commandline: needle
#    -asequence dna-align/BSNT_04146___ysmA.1.9828.seq
#    -bsequence dna-align/RBAM_025490___ysmA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04146___ysmA-RBAM_025490___ysmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04146___ysmA-RBAM_025490___ysmA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04146___ysmA
# 2: RBAM_025490___ysmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 461
# Identity:     333/461 (72.2%)
# Similarity:   333/461 (72.2%)
# Gaps:          40/461 ( 8.7%)
# Score: 1190.0
# 
#
#=======================================

BSNT_04146___      1 ATGAAGCTTCCCGC-TTATATTGATATGCCGTTTCAAGAATGGAAAACA-     48
                     |||||.| ..|||| .|||||||||||.||||||.|||||||| |.||| 
RBAM_025490__      1 ATGAAAC-AACCGCAATATATTGATATCCCGTTTGAAGAATGG-AGACAG     48

BSNT_04146___     49 TCCTTTTCTTTTTTCAATGAGGTATCCGTAAGATTTTCCGAGACAGACAT     98
                     ||.||||||||.||.|.|||.|||||.||..|.|||||.||.||.||.||
RBAM_025490__     49 TCGTTTTCTTTCTTTACTGAAGTATCGGTTCGTTTTTCAGAAACGGATAT     98

BSNT_04146___     99 GTTTGGGCATATGAATAATGTAACCCCTTTTATATATTTTGAGGAGGCGC    148
                     |||.||.|||||||||||||||||||||||.||.|||||||||||.||||
RBAM_025490__     99 GTTCGGCCATATGAATAATGTAACCCCTTTCATCTATTTTGAGGAAGCGC    148

BSNT_04146___    149 GGATTTCTTATTTTAAAAAGCTGAATATGATGAGTGAAAAC------AAA    192
                     ||||..|||||||.|||.|||          |||..|.|||      |||
RBAM_025490__    149 GGATCGCTTATTTCAAACAGC----------GAGGCATAACGGCGCAAAA    188

BSNT_04146___    193 C----AGACCATGACAGTCGTGGCAAGCCAGCAATGCGATTATTTGCGCC    238
                     |    |.||.|||||.|||||.|||||||||||.|||||.|||.||||.|
RBAM_025490__    189 CTCGGAAACGATGACGGTCGTCGCAAGCCAGCAGTGCGACTATATGCGTC    238

BSNT_04146___    239 AAGTCATGCCTTATGAAGAGTTGCGCATCTATGTGAAAACAAGCACAGTC    288
                     |.||.|||||.||||||.|..||||.||.|||||||||.|||||.|.|.|
RBAM_025490__    239 AGGTGATGCCGTATGAAAATCTGCGGATTTATGTGAAAGCAAGCGCTGCC    288

BSNT_04146___    289 GGCAGTTCATCTCTTACCTTGCACTATCTCGGAGA----GAACCGCGAAG    334
                     ||.|.|.|.||..|.|||.|.||.||.||.|||||    ||..||    |
RBAM_025490__    289 GGAAATGCGTCCGTCACCCTTCATTACCTTGGAGAAAATGAGTCG----G    334

BSNT_04146___    335 GCGAGCCCTGCTTCACCGGGGCAGTCGTGATGGTTCAAGTCTCAAAGGAA    384
                     ||..|||.|||||.||.||..|.|||||.|||||||||||.||.|||.||
RBAM_025490__    335 GCCTGCCGTGCTTTACGGGTTCTGTCGTTATGGTTCAAGTGTCGAAGAAA    384

BSNT_04146___    385 AGCGGCAAAGCTGTCAGCTGGACGGATGAGGAGAAAGAAACGC-TTCTTC    433
                     |||||||||||.||||||||||||||...||||||||    || ||||.|
RBAM_025490__    385 AGCGGCAAAGCGGTCAGCTGGACGGAGCGGGAGAAAG----GCATTCTGC    430

BSNT_04146___    434 ATACACGATAA    444
                     ...|..||   
RBAM_025490__    431 TCGCCTGA---    438


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