Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04142 and RBAM_025460

See Amino acid alignment / Visit BSNT_04142 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:31
# Commandline: needle
#    -asequence dna-align/BSNT_04142___racE.1.9828.seq
#    -bsequence dna-align/RBAM_025460___racE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04142___racE-RBAM_025460___racE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04142___racE-RBAM_025460___racE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04142___racE
# 2: RBAM_025460___racE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 826
# Identity:     635/826 (76.9%)
# Similarity:   635/826 (76.9%)
# Gaps:          17/826 ( 2.1%)
# Score: 2396.0
# 
#
#=======================================

BSNT_04142___      1 ---TTGGAACAACCAATAGGAGTCATTGATTCCGGGGTTGGCGGTTTAAC     47
                        ||||||||.||.|||||||||||||||||||||||||||||.|||||
RBAM_025460__      1 TTGTTGGAACAGCCGATAGGAGTCATTGATTCCGGGGTTGGCGGGTTAAC     50

BSNT_04142___     48 CGTTGCGAAGGAAATCATGAGACAGCTACCTAAAGAAAATATTATCTACG     97
                     ||||||.|||||||||||||||||||||||.||.||||||||.|||||.|
RBAM_025460__     51 CGTTGCTAAGGAAATCATGAGACAGCTACCGAAGGAAAATATCATCTATG    100

BSNT_04142___     98 TCGGGGATACGAAACGGTGTCCTTATGGACCGCGCCCTGAAGAAGAGGTG    147
                     |.||.|||||.|||||.||.||.||.||.|||||.|||||||||||.||.
RBAM_025460__    101 TGGGAGATACAAAACGCTGCCCGTACGGCCCGCGTCCTGAAGAAGAAGTT    150

BSNT_04142___    148 CTTCAATATACGTGGGAGCTGACGAATTATTTACTCGAAAACCACCACAT    197
                     ||||||||.||||||||..||||..||||..|.||.|||||||||||.||
RBAM_025460__    151 CTTCAATACACGTGGGAAATGACCGATTACCTGCTGGAAAACCACCATAT    200

BSNT_04142___    198 CAAAATGCTCGTGATCGCCTGTAATACAGCAACAGCGATCGCTTTGGATG    247
                     |||||||||||||||||||||.|||||.||.||.||.||.||.|||||.|
RBAM_025460__    201 CAAAATGCTCGTGATCGCCTGCAATACGGCCACGGCCATTGCCTTGGAGG    250

BSNT_04142___    248 ACATCCAGCGC--AGCGTCGGCATACCGGTGGTCGGAGTCATCCAGCCTG    295
                     |.||.||||||  |.||  |..||.|||||.|||||.|||||.|||||.|
RBAM_025460__    251 ATATTCAGCGCAAAACG--GATATTCCGGTTGTCGGCGTCATTCAGCCGG    298

BSNT_04142___    296 GTGCGAGAGCAGCGATAAAAGTGACGGATAATCAGCATATCGGTGTCATC    345
                     ||||.|||.|.||||||||.||.|||.|.||.|||||||||||.||||||
RBAM_025460__    299 GTGCAAGAACGGCGATAAAGGTCACGAAAAACCAGCATATCGGCGTCATC    348

BSNT_04142___    346 GGCACAGAGAATACGATTAAGAGCAATGCATACGAAGAAGCGCTTTTGGC    395
                     |||||.|..|||||.|||||.||||..||.||.||..|.|||||..|.|.
RBAM_025460__    349 GGCACGGTCAATACCATTAAAAGCAGAGCGTATGAGCAGGCGCTGCTCGG    398

BSNT_04142___    396 ATTAAACCCTG-ATTTGAAGGTTGAAAACCTTGCCTGCCCGCTGCTTGTG    444
                     .||||||.|.| |.||.|| |||||.|||...||.||.||||||||.|||
RBAM_025460__    399 GTTAAACGCAGAACTTCAA-GTTGAGAACACGGCTTGTCCGCTGCTCGTG    447

BSNT_04142___    445 CCTTTTGTGGAAAGCGGGAAGTTTCTCGACAAAACAGCAGACGAGATTGT    494
                     ||.||||||||||||||...||||||..|..||.||||.||.||....||
RBAM_025460__    448 CCGTTTGTGGAAAGCGGACGGTTTCTTCAGGAATCAGCGGAGGAAGCGGT    497

BSNT_04142___    495 TAAAACCTCGCTGTATCCGTTAAAAGACACATCAATTGATTCGCTGATTT    544
                     |.||.|.|||||..|.||.|||||||..|||||||||||..|..||||||
RBAM_025460__    498 TGAAGCATCGCTTGAGCCTTTAAAAGGTACATCAATTGACACCTTGATTT    547

BSNT_04142___    545 TAGGCTGCACCCATTACCCTATTTTAAAAGAAGCCATTCAAAGATATATG    594
                     ||||.||.||.|||||.||.|||||||||||..|.|||||.|..||||||
RBAM_025460__    548 TAGGATGTACGCATTATCCGATTTTAAAAGATCCGATTCAGAACTATATG    597

BSNT_04142___    595 GGAGAGCACGTAAACATTATTTCGTCCGGCGATGAAACAGCCCGGGAAGT    644
                     ||||||||.||.||.||.|||||.|||||.||.||.||.||..|.|||||
RBAM_025460__    598 GGAGAGCATGTGAAAATCATTTCCTCCGGAGACGAGACGGCGAGAGAAGT    647

BSNT_04142___    645 CAGCACAATTCTCTCTTATAAAGGGCTGCTGAACCAGTCTCCGA---TTG    691
                     .|||||.|||.|.|||||||||||..||.|.|||||.|   |||   .||
RBAM_025460__    648 GAGCACCATTTTGTCTTATAAAGGTTTGTTAAACCAAT---CGAAACATG    694

BSNT_04142___    692 CCCCGGATCATCAGTTCCTGACAACAGGGGCGCGTGATCAG-TTTGCAAA    740
                     |.|||||.|||||.||.||.|||||.||||.||| ||.|.| ||.|||||
RBAM_025460__    695 CACCGGAGCATCAATTTCTTACAACGGGGGAGCG-GAACGGCTTCGCAAA    743

BSNT_04142___    741 AATCGCAGACGATTGGTTTGGCCATGAAGTCGGGCATGTGGAATGTATCT    790
                     |||.||.||.||.|||||.|||||.|||.||||.|||||.||.||.||||
RBAM_025460__    744 AATTGCCGAAGACTGGTTCGGCCACGAAATCGGCCATGTCGAGTGCATCT    793

BSNT_04142___    791 CACTGCAAGAACCGATTAAAAGATAG    816
                     |.||.|||||.|||.|.|.||.|||.
RBAM_025460__    794 CCCTTCAAGAGCCGGTCAGAAAATAA    819


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04142 and RBAM_025460

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
