Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04138 and RBAM_025430

See Amino acid alignment / Visit BSNT_04138 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:30
# Commandline: needle
#    -asequence dna-align/BSNT_04138___ysnA.1.9828.seq
#    -bsequence dna-align/RBAM_025430___ysnA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04138___ysnA-RBAM_025430___ysnA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04138___ysnA-RBAM_025430___ysnA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04138___ysnA
# 2: RBAM_025430___ysnA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 592
# Identity:     481/592 (81.2%)
# Similarity:   481/592 (81.2%)
# Gaps:           8/592 ( 1.4%)
# Score: 1932.0
# 
#
#=======================================

BSNT_04138___      1 ATGAAAGAAGCAATTATTGCGACACATAATCCGGGAAAAGTGAAGGAATT     50
                     .||||||||||.||||||||||||||.||||.||||||||||||.|||||
RBAM_025430__      1 GTGAAAGAAGCCATTATTGCGACACACAATCAGGGAAAAGTGAAAGAATT     50

BSNT_04138___     51 CAAAGAAATTCTTGAGCCAAGAGGCTATGATGTCAAATCTTTAGCTGAAA    100
                     |||.||||||||.||.||.|.||||||....|||...|||||.||.||||
RBAM_025430__     51 CAAGGAAATTCTCGAACCGAAAGGCTACAGCGTCTCTTCTTTGGCGGAAA    100

BSNT_04138___    101 TTGGATTTACAGAAGAAATTGAAGAAACAGGCCATACATTTGAAGAAAAT    150
                     |.||||||||.|||||||||||||||||.||.|||||.|||||||||||.
RBAM_025430__    101 TCGGATTTACGGAAGAAATTGAAGAAACCGGACATACCTTTGAAGAAAAC    150

BSNT_04138___    151 GCCATTCTGAAAGCGGAAGCTGTTGCCAAAGCAGTAAACAAAATGGTGAT    200
                     |||||..|.|||||||||||.||.||.|||||.||.|||||||||||.||
RBAM_025430__    151 GCCATCTTAAAAGCGGAAGCCGTGGCAAAAGCCGTCAACAAAATGGTCAT    200

BSNT_04138___    201 TGCGGACGACTCCGGTCTATCCATCGATAATCTTGGCGGCAGACCCGGGG    250
                     |||.||||||||||||.||||..|.||.||.|||||.||||||||.||.|
RBAM_025430__    201 TGCAGACGACTCCGGTTTATCGGTGGACAACCTTGGAGGCAGACCGGGCG    250

BSNT_04138___    251 TTTATTCAGCCCGCTATGCAGGGGAA-CAGAAAGACGACCAGGCAAATAT    299
                     |||||||||||||.|||||.||.||| || |||||.||..||||.|||||
RBAM_025430__    251 TTTATTCAGCCCGTTATGCCGGAGAAGCA-AAAGATGATAAGGCGAATAT    299

BSNT_04138___    300 CGAAAAAGTGC--TCAGCGAGCTGAAAGGTATCGAAAAAGAACAGCGCAC    347
                     .||.||.||||  |||  ||..|.|||||.|||||||||||.||||||||
RBAM_025430__    300 GGACAAGGTGCTGTCA--GAATTAAAAGGCATCGAAAAAGAGCAGCGCAC    347

BSNT_04138___    348 CGCCCGTTTCCGCTGCGCACTGGCCGTGAGTATTCCCGGTGAGGAAACAA    397
                     .|||||||||||||||||.||.|||||.||.||.||.||..|||||||||
RBAM_025430__    348 GGCCCGTTTCCGCTGCGCCCTTGCCGTCAGCATGCCGGGGCAGGAAACAA    397

BSNT_04138___    398 AAACAGTCGAAGGCCATGTTGAAGGGTATATTGCCGAA-GAACCGAGAGG    446
                     ||||.||||||||.||||||||||||||||||||.||| ||.||||| ||
RBAM_025430__    398 AAACGGTCGAAGGTCATGTTGAAGGGTATATTGCGGAAGGACCCGAG-GG    446

BSNT_04138___    447 AGAATATGGCTTTGGCTATGACCCAATCTTTATCGTGAAAGATAAAGATA    496
                     .||..|.||.||.||||||||.||.||.|||||.||.|||||||||||||
RBAM_025430__    447 GGATAACGGGTTCGGCTATGATCCCATTTTTATTGTAAAAGATAAAGATA    496

BSNT_04138___    497 AGACAATGGCTGAACTGACAAGTGATGAAAAAAATAAAATCAGCCATAGG    546
                     |.||.|||||..|.||||||||.|.|||.|||||.|||||||||||.|||
RBAM_025430__    497 AAACCATGGCCCAGCTGACAAGCGCTGAGAAAAACAAAATCAGCCACAGG    546

BSNT_04138___    547 GCTGACGCGCTTAAAAAGCTGTCTAAGCTTTTGGAGGCATAA    588
                     |||||.|||||.||.||.|||||.|||||..|.||..|||||
RBAM_025430__    547 GCTGAGGCGCTCAAGAAACTGTCAAAGCTGCTTGATTCATAA    588


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