Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04112 and RBAM_025370
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:29
# Commandline: needle
# -asequence dna-align/BSNT_04112___ilvB.1.9828.seq
# -bsequence dna-align/RBAM_025370___ilvB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04112___ilvB-RBAM_025370___ilvB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04112___ilvB-RBAM_025370___ilvB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04112___ilvB
# 2: RBAM_025370___ilvB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1815
# Identity: 1370/1815 (75.5%)
# Similarity: 1370/1815 (75.5%)
# Gaps: 111/1815 ( 6.1%)
# Score: 5341.0
#
#
#=======================================
BSNT_04112___ 0 -------------------------------------------------- 0
RBAM_025370__ 1 TTGCGTCAGCCGGCGCTGCGTTTTATGAATTGGATTTTAGAAGGGAACAT 50
BSNT_04112___ 1 -------------------ATGAGGACTAATGTACAGGTGGATTCAGCAT 31
|||.|.||.||||||||||.||||||....|
RBAM_025370__ 51 TGAAAAGGAGGAACTGAAAATGGGCACAAATGTACAGGCGGATTCTTTGT 100
BSNT_04112___ 32 CTGCCAAATGTACACAGACGATGAGCGGAGCATTAATGCTGATTGAATCA 81
|||||.||||||||.|.||.||||.|||.||..|.|||||||||||||||
RBAM_025370__ 101 CTGCCGAATGTACAAAAACAATGAACGGGGCTCTGATGCTGATTGAATCA 150
BSNT_04112___ 82 TTAAAAAAAGAGAAAGTAGAAATGATTTTCGGTTATCCGGGCGGGGCTGT 131
|||||.|||||.||.||.||.|||||.|||||.||||||||.||.||.||
RBAM_025370__ 151 TTAAAGAAAGAAAATGTCGAGATGATCTTCGGCTATCCGGGGGGAGCCGT 200
BSNT_04112___ 132 GCTTCCGATTTACGATAAGCTATA-CAATTCAGGGTTGGTACATATCCTT 180
.|||||||||||||||||.||.|| ||| ||||||.||||.||.|||||.
RBAM_025370__ 201 CCTTCCGATTTACGATAAACTGTATCAA-TCAGGGCTGGTCCACATCCTG 249
BSNT_04112___ 181 CCCCGTCACGAACAAGGAGCAATTCATGCAGCGGAGGGATACGCAAGGGT 230
|||||.|||||.|||||.||.|||||.||.||.||.||.||.||..|..|
RBAM_025370__ 250 CCCCGCCACGAGCAAGGCGCGATTCACGCGGCAGAAGGGTATGCGCGAAT 299
BSNT_04112___ 231 CTCCGGAAAACCGGGTGTCGTCATTGCCACGTCAGGGCCGGGAGCGACAA 280
|||||||||.|||||.||.||.|||||.||.||.||.||.||||||||||
RBAM_025370__ 300 CTCCGGAAAGCCGGGGGTTGTGATTGCTACCTCCGGACCCGGAGCGACAA 349
BSNT_04112___ 281 ACCTTGTTACAGGCCTTGCTGATGCCATGATTGATTCATTGCCGTTAGTT 330
|..|.|||||.||.|||||.|||||.|||||.||||||||||||.|.||.
RBAM_025370__ 350 ATTTAGTTACCGGTCTTGCGGATGCGATGATAGATTCATTGCCGCTCGTA 399
BSNT_04112___ 331 GTCTTTACAGGGCAGGTAGCAACCTCTGTAATCGGGAGCGATGCATTTCA 380
||.|||||.||.|||||.||.||.||.||.|||||.|||||.||.||.||
RBAM_025370__ 400 GTGTTTACCGGTCAGGTGGCCACTTCGGTCATCGGCAGCGACGCTTTCCA 449
BSNT_04112___ 381 GGAAGCAGACATTTTAGGGATTACGATGCCAGTAACAAAACACAGCTACC 430
||||||.|||||||||||.|||||||||||..|.||.|||||||||||||
RBAM_025370__ 450 GGAAGCCGACATTTTAGGAATTACGATGCCGATTACGAAACACAGCTACC 499
BSNT_04112___ 431 AGGTTCGCCAGCCGGAAGATCTGCCGCGCATCATTAAAGAAGCGTTCCAT 480
|.||.||||..|||||||||||.||.||..|.||||||||.|||||||||
RBAM_025370__ 500 AAGTCCGCCGTCCGGAAGATCTCCCCCGTGTGATTAAAGAGGCGTTCCAT 549
BSNT_04112___ 481 ATTGCAACAACTGGAAGACCCGGACCTGTATTGATTGATATTCCGAAAGA 530
||.||.||.||.||||||||.||.||.|||||.||||||||.|||||.||
RBAM_025370__ 550 ATCGCCACGACGGGAAGACCGGGCCCGGTATTAATTGATATACCGAAGGA 599
BSNT_04112___ 531 TGTAGCAACAATTGAAGGAGAATTCAGCTACGATCATGAGATGAATCTCC 580
|||.|||.||.||||||||||.|||||.||.|||||.|||||.|..||.|
RBAM_025370__ 600 TGTCGCAGCATTTGAAGGAGAGTTCAGATATGATCACGAGATCAGCCTTC 649
BSNT_04112___ 581 CGGGATACCAGCCGACAACAGAGCCGAATTATTTGCAGATCCGCAAGCTT 630
||||.||.||||||..||.||||||.||.|||.||||||||||.|||||.
RBAM_025370__ 650 CGGGTTATCAGCCGGTAAAAGAGCCTAACTATCTGCAGATCCGAAAGCTC 699
BSNT_04112___ 631 GTGGAAGCCGTGAGCAGTGCGAAAAAACCGGTGATCCTGGCGGGTGCGGG 680
||||||||.||.||||||||||||||.|||||.||..|.||.||.|||||
RBAM_025370__ 700 GTGGAAGCTGTCAGCAGTGCGAAAAAGCCGGTTATTTTAGCCGGAGCGGG 749
BSNT_04112___ 681 CGTATTGCATGGAAAAGCGTCAGAAGAATTAAAAAATTATGCTGAACAGC 730
.||.|||||.||.|||||.||||||||.||||||||||||||.|||||||
RBAM_025370__ 750 TGTTTTGCACGGTAAAGCTTCAGAAGATTTAAAAAATTATGCCGAACAGC 799
BSNT_04112___ 731 AGCAAATCCCTGTGGCACACACCCTTTTGGGGCTCGGAGGCTTCCCGGCT 780
|||||||.||.||.||.|||||.|||.|.||.||.||.||.||||||||.
RBAM_025370__ 800 AGCAAATACCGGTAGCGCACACGCTTCTCGGTCTGGGCGGTTTCCCGGCA 849
BSNT_04112___ 781 GACCATCCGCTTTTCCTAGGGATGGCGGGAATGCACGGTACTTATACAGC 830
||||||||.|||||.||.||.||||||||.||||||||.||.||.|||||
RBAM_025370__ 850 GACCATCCTCTTTTTCTGGGAATGGCGGGGATGCACGGCACATACACAGC 899
BSNT_04112___ 831 CAATATGGCTCTTCATGAATGTGATCTATTAATCAGTATCGGCGCCCGTT 880
.||||||||.|||.|..|.|||||..|.||.|||||.|||||.||.||.|
RBAM_025370__ 900 GAATATGGCGCTTTACCACTGTGACTTGTTGATCAGCATCGGAGCGCGGT 949
BSNT_04112___ 881 TTGATGACCGTGTCACAGGAAACCTGAAACACTTTGCCAGAAACG--CAA 928
|.|||||.||.||.||.|||||.|||||.||.|||| ||.||.|| |||
RBAM_025370__ 950 TCGATGATCGCGTGACCGGAAATCTGAAGCATTTTG-CAAAATCGGCCAA 998
BSNT_04112___ 929 AGATAGCCCACATCGATATTGATCCAGCTGAAATCGGAAAAATCATGAAA 978
|| |.||.||.||||||||||||||.|||||||||||||||||.||..||
RBAM_025370__ 999 AG-TGGCGCATATCGATATTGATCCTGCTGAAATCGGAAAAATTATTGAA 1047
BSNT_04112___ 979 ACACAGATTCCTGTAGTCGGAGACAGCAAAATTGTCCTGCAGGAGCTGAT 1028
||.||||||||.||.|||||.|||||.|||||.|||||.|||||..|..|
RBAM_025370__ 1048 ACGCAGATTCCGGTGGTCGGCGACAGTAAAATCGTCCTTCAGGAATTATT 1097
BSNT_04112___ 1029 CAAACAAGACGGCAAACAAAGCGATTCA-----AGCGAATGGAAAAAACA 1073
.||.|||.||||.|||| ||.|| || || |||||||||.|.||
RBAM_025370__ 1098 GAAGCAAAACGGAAAAC--AGGGA--CAGACAGAG-GAATGGAAACAGCA 1142
BSNT_04112___ 1074 GCTCGCCGAATGGAAAGAAGAGTATCCGCTCTGGTATGTAGATAATGAAG 1123
|||..|.||||||||||||||.||||||||.||||||..|||.||...||
RBAM_025370__ 1143 GCTTTCAGAATGGAAAGAAGAATATCCGCTTTGGTATACAGACAACAGAG 1192
BSNT_04112___ 1124 AAGAAGGTTTTAAACCTCAGAAATTGATTGAATATATTCATCAATTTACA 1173
||||.||.||.|||||.||.||..|||||||.||||||||.|||||.|||
RBAM_025370__ 1193 AAGAGGGCTTGAAACCCCAAAAGCTGATTGAGTATATTCACCAATTCACA 1242
BSNT_04112___ 1174 AAAGGAGAGGCCATTGTCGCAACAGATGTAGGCCAGCATCAAATGTGGTC 1223
||.||.|||||.|||||.||.||.|||||.||||||||.||.||||||.|
RBAM_025370__ 1243 AACGGTGAGGCGATTGTGGCGACGGATGTCGGCCAGCACCAGATGTGGGC 1292
BSNT_04112___ 1224 AGCGCAATTTTATCCGTTCCAAAAAGCAGATAAATGGGTCACGTCAGGCG 1273
.||.||.||||||||.||||.|||.||.|||||.|||||.||.||.||.|
RBAM_025370__ 1293 GGCTCAGTTTTATCCTTTCCGAAAGGCTGATAAGTGGGTTACCTCGGGGG 1342
BSNT_04112___ 1274 GACTTGGAACGATGGGATTCGGTCTTCCGGCGGCGATCGGCGCACAGCTG 1323
||||.||.||.|||||.|||||.|||||||||||.|||||.||.||||||
RBAM_025370__ 1343 GACTCGGCACAATGGGCTTCGGCCTTCCGGCGGCTATCGGAGCGCAGCTG 1392
BSNT_04112___ 1324 GCCGA----AAAAGATGCTACTGTTGTCGCGGTTGTCGGAGACGGCGGAT 1369
||||| | |.||.||.||.||.||..|..|||||||||||||.|
RBAM_025370__ 1393 GCCGATCGTA----ACGCCACGGTCGTTGCCATCCTCGGAGACGGCGGTT 1438
BSNT_04112___ 1370 TCCAAATGACGCTTCAAGAACTCGATGTTATTCGCGAATTAAATCTTCCG 1419
|.||.|||||.|||||.|||.|.|||||.||.||..|..|.||||||||.
RBAM_025370__ 1439 TTCAGATGACCCTTCAGGAATTAGATGTCATCCGGCAGCTGAATCTTCCT 1488
BSNT_04112___ 1420 GTCAAGGTAGTGATTTTAAATAACGCTTGTCTCGGAATGGTCAGACAGTG 1469
|||||.||.||.||.||.||.||||..|||||.||.||||||||||||||
RBAM_025370__ 1489 GTCAAAGTGGTTATCTTGAACAACGAATGTCTGGGCATGGTCAGACAGTG 1538
BSNT_04112___ 1470 GCAGGAAATTTTCTATGAAGAACGTTATTCAGAATCTAAATTCGCTTCTC 1519
|||||||||.|||||||||||.||.|||||.|||||.||||||.|..|.|
RBAM_025370__ 1539 GCAGGAAATCTTCTATGAAGAGCGCTATTCTGAATCCAAATTCTCGGCGC 1588
BSNT_04112___ 1520 AGCCTGACTTCGTCAAATTGTCCGAAGCATACGGCATTAAAGGCATCAGA 1569
||||||||||.|||||||||||.|||||.|||||||||||||||.||.|.
RBAM_025370__ 1589 AGCCTGACTTTGTCAAATTGTCAGAAGCCTACGGCATTAAAGGCGTCCGG 1638
BSNT_04112___ 1570 ATTTCATC------AGAAGCGGAAGCAAAGGTAAAGCTGGAAGAGGCATT 1613
|||||||| |||.||||||| ||| ||||..||.||||..|
RBAM_025370__ 1639 ATTTCATCGGAGGAAGAGGCGGAAG--AAG----AGCTTAAAAAGGCGCT 1682
BSNT_04112___ 1614 AACATCAAGAGAACCTGTTGTCATTGACGTGCGGGTTGCCAGCGAA---G 1660
..||||||.||||||.|..||.||||||||.|||||.|||| || |
RBAM_025370__ 1683 TTCATCAAAAGAACCGGCCGTTATTGACGTCCGGGTCGCCA---AAAGCG 1729
BSNT_04112___ 1661 AAAAAGTATTCCCGATGGTGGCTCCGGGGAAAGGGCTGCATGAAATGGTG 1710
|.|||||||||||||||.|.||.|||||.|||||.||.||||||||||||
RBAM_025370__ 1730 AGAAAGTATTCCCGATGATTGCGCCGGGTAAAGGACTTCATGAAATGGTG 1779
BSNT_04112___ 1711 GGGGTGAAACCTTGA 1725
|||||||||||||||
RBAM_025370__ 1780 GGGGTGAAACCTTGA 1794
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