Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04111 and RBAM_025360

See Amino acid alignment / Visit BSNT_04111 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:29
# Commandline: needle
#    -asequence dna-align/BSNT_04111___ilvH.1.9828.seq
#    -bsequence dna-align/RBAM_025360___ilvH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04111___ilvH-RBAM_025360___ilvH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04111___ilvH-RBAM_025360___ilvH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04111___ilvH
# 2: RBAM_025360___ilvH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 526
# Identity:     428/526 (81.4%)
# Similarity:   428/526 (81.4%)
# Gaps:           8/526 ( 1.5%)
# Score: 1770.0
# 
#
#=======================================

BSNT_04111___      1 TTGAAAAGAATTATCACATTGACTGTGGTGAACCGCTCCGGGGTGTTAAA     50
                     ||||||.|.|||||||||||.||.|||||.||||||||.||.||.|||||
RBAM_025360__      1 TTGAAACGCATTATCACATTAACGGTGGTCAACCGCTCGGGAGTATTAAA     50

BSNT_04111___     51 CCGGATCACCGGTCTATTCACAAAAAGGCATTACAACATTGAAAGCATTA    100
                     ||||||||||||.||.||.||||||||.||.||.||.||.||||||||.|
RBAM_025360__     51 CCGGATCACCGGCCTGTTTACAAAAAGACACTATAATATCGAAAGCATCA    100

BSNT_04111___    101 CAGTTGGACACACAGAAACAGCCGGCGTTTCCAGAATCACCTTCGTCGTT    150
                     |.||.||.|||||.||||||..|||.|||||.||.||.||.||.|||||.
RBAM_025360__    101 CTGTAGGCCACACGGAAACAAGCGGTGTTTCAAGGATTACATTTGTCGTC    150

BSNT_04111___    151 CATGTTGAAGGAGAAAATGATGTTGAACAGTTAACGAAACAGCTCAACAA    200
                     |||||.|||||.||||||||.||.||.|||.|.||.||.|||||.|||||
RBAM_025360__    151 CATGTGGAAGGCGAAAATGACGTAGAGCAGCTGACAAAGCAGCTTAACAA    200

BSNT_04111___    201 ACAGATTGATGTACTGAAAGTCACAGACATCACAAATCAATCGATTGTCC    250
                     |||.|||||.||.||||||||.||.||.||.|||||.|||||||||||.|
RBAM_025360__    201 ACAAATTGACGTCCTGAAAGTGACGGATATTACAAACCAATCGATTGTAC    250

BSNT_04111___    251 AGAGGGAGCTGGCCTTAATCAAGGTTGTCTCCGCACCTTCAACGAGAACA    300
                     ||.|.||||||||.||||||||.|||||.||||||||.||..|.|||||.
RBAM_025360__    251 AGCGTGAGCTGGCATTAATCAAAGTTGTTTCCGCACCGTCGGCCAGAACG    300

BSNT_04111___    301 GAGATTAATGGAATCATAGAACCGTTTAGAGCCTCTGTCGTTGATGTCAG    350
                     ||.||.|||||||||||.||.|||||.|||||.||.||||||||||||..
RBAM_025360__    301 GAAATCAATGGAATCATTGAGCCGTTCAGAGCTTCCGTCGTTGATGTCTC    350

BSNT_04111___    351 CAGAGACAGCATCGTTGTTCAGGTGACAGGCGAATCTAACAAAATTGAAG    400
                     .|||||||||.||||.||||||||.||.|||||||||||.|||||.||||
RBAM_025360__    351 AAGAGACAGCGTCGTCGTTCAGGTTACCGGCGAATCTAATAAAATCGAAG    400

BSNT_04111___    401 CGCTTATTGAATTGTTGAAACCTTATGGCATTAAAGAAATCGCGAGAACA    450
                     ||||.||.||..||.|.|||||.||.|||||||||||||||||||||||.
RBAM_025360__    401 CGCTCATAGAGCTGCTCAAACCCTACGGCATTAAAGAAATCGCGAGAACG    450

BSNT_04111___    451 GGTAC-ACGGCTTTTGCGAGGGGTACCCAGCAAAAGGCGTCATCCAATAA    499
                     ||.|| |||||||||||||||||.||||||||.|||.|||||||||||||
RBAM_025360__    451 GGCACAACGGCTTTTGCGAGGGGAACCCAGCAGAAGACGTCATCCAATAA    500

BSNT_04111___    500 AACAATATCTATTGTATAAAACATAA    525
                     ||||||.||.|||||||||       
RBAM_025360__    501 AACAATTTCAATTGTATAA-------    519


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