Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04090 and RBAM_025210

See Amino acid alignment / Visit BSNT_04090 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:27
# Commandline: needle
#    -asequence dna-align/BSNT_04090___hemC.1.9828.seq
#    -bsequence dna-align/RBAM_025210___hemC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04090___hemC-RBAM_025210___hemC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04090___hemC-RBAM_025210___hemC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04090___hemC
# 2: RBAM_025210___hemC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 956
# Identity:     744/956 (77.8%)
# Similarity:   744/956 (77.8%)
# Gaps:          25/956 ( 2.6%)
# Score: 2885.0
# 
#
#=======================================

BSNT_04090___      1 ATGATGAGAACGATTAAAGTAGGTTCCAGACGGAGCAAACTCGCTATGAC     50
                        ||||||||||||||.|||||||||||||||||||||||.||||||||
RBAM_025210__      1 ---ATGAGAACGATTAAGGTAGGTTCCAGACGGAGCAAACTGGCTATGAC     47

BSNT_04090___     51 TCAAACAAAATGGGTTATTCAAAAACTGAAGGAAATCAATCCTTCGTTTG    100
                     .||.|||||||||||.|||.|.|||.||||||||.|.||.|||||.|.|.
RBAM_025210__     48 CCAGACAAAATGGGTGATTAACAAATTGAAGGAATTGAACCCTTCCTATA     97

BSNT_04090___    101 TTTTTGAAATTAAAGAGATCGTGACAAAGGGCGACCGGATTGTCGATGTT    150
                     ..||||||||....|||||.||.|||||.||||||||.||..|.||||||
RBAM_025210__     98 ACTTTGAAATCCGGGAGATTGTCACAAAAGGCGACCGCATCCTTGATGTT    147

BSNT_04090___    151 ACACTCTCAAAAGTGGGTGGAAAAGGGCTGTTTGTCAAAGAAATTGAACA    200
                     |||||.|||||||||||.||.|||||..|||||||||||||.||||||||
RBAM_025210__    148 ACACTGTCAAAAGTGGGCGGCAAAGGTTTGTTTGTCAAAGAGATTGAACA    197

BSNT_04090___    201 GGCGCTTTTAAACGAAGAGATTGATATGGCGGTGCACAGCATGAAGGACA    250
                     ||||||..|..|..|.|||||||||||||||||.|||||||||||.||||
RBAM_025210__    198 GGCGCTGCTGCATCAGGAGATTGATATGGCGGTTCACAGCATGAAAGACA    247

BSNT_04090___    251 TGCCTGCTGTTTTGCCTGAAGGGCTTGTGATCGGCTGTATTCCTGAACGG    300
                     ||||.||.|||||||||||.||.|||||.||.|||||.||.||..||||.
RBAM_025210__    248 TGCCCGCCGTTTTGCCTGAGGGTCTTGTCATAGGCTGCATACCGAAACGT    297

BSNT_04090___    301 GAAGACCCGCGTGATGCCCTTATTTCAAA---GAATCGCGTAAAGCTTTC    347
                     ||.||.|||||||||||.||.||||||||   |.|||   .||||||   
RBAM_025210__    298 GAGGATCCGCGTGATGCGCTGATTTCAAAGGGGCATC---AAAAGCT---    341

BSNT_04090___    348 AGAA----ATGAAGGAAGGTGCTGTCATTGGCACAAGCAGTTTAAGAAGA    393
                      |.|    ||.||.|||||.|...||||.|||||.|||||||||||||||
RBAM_025210__    342 -GGACGGCATAAAAGAAGGAGGCATCATCGGCACCAGCAGTTTAAGAAGA    390

BSNT_04090___    394 AGCGCGCAGCTT-TTGATTGAGCGCCCTGACCTTACAATTAAATGGATTA    442
                     |||||.|||.|| ||| .|||.||||||||.|||||||||||.|||||.|
RBAM_025210__    391 AGCGCCCAGATTCTTG-CTGAACGCCCTGATCTTACAATTAAGTGGATCA    439

BSNT_04090___    443 GAGGTAATATAGATACAAGACTTCAAAAGCTGGAAACAGAGGATTATGAC    492
                     ||||.|||||.|||||.||||||||||||||.|||||.||.|||||.||.
RBAM_025210__    440 GAGGCAATATTGATACGAGACTTCAAAAGCTTGAAACGGAAGATTACGAT    489

BSNT_04090___    493 GCGATTATTTTAGCGGCTGCCGGCCTTTCTAGAATGGGGTGGAAGCAAGA    542
                     ||.|||||||||||||||||.||.|||||.||||||||.|||||..|.||
RBAM_025210__    490 GCTATTATTTTAGCGGCTGCGGGACTTTCGAGAATGGGCTGGAAAGATGA    539

BSNT_04090___    543 TGTCGTAACCGAATTCCTTGAGCCTGAGCGCTGTTTGCCTGCTGTGGGGC    592
                     |||.|||.|.|||||.||.||.||.||.||||||.|||||||.||.||.|
RBAM_025210__    540 TGTTGTATCTGAATTTCTCGAACCGGACCGCTGTCTGCCTGCGGTCGGCC    589

BSNT_04090___    593 AGGGAGCCCTGGCGATTGAGTGCCGAGAATCGGATGAAGAGCTGTTGGCG    642
                     |.||.||.||.||.|||||.|||.||||.||||||||.|||||.|||..|
RBAM_025210__    590 AAGGCGCTCTTGCCATTGAATGCAGAGAGTCGGATGAGGAGCTTTTGAAG    639

BSNT_04090___    643 TTGTTTTCTCAGTTTACAGATGAATATACAAAACGGACTGTCTTAGCGGA    692
                     .|||||.|.||.|||||.|||||.|||||..|.||.||.||...|||.||
RBAM_025210__    640 CTGTTTGCGCAATTTACCGATGAGTATACGCAGCGCACGGTGGCAGCCGA    689

BSNT_04090___    693 ACGTGCTTTTTTAAACGCGATGGAGGGCGGCTGCCAGGTTCCGATCGCAG    742
                     |||.|||||.|||.||||||||||.|||||||||||.||.|||||.||.|
RBAM_025210__    690 ACGGGCTTTCTTACACGCGATGGAAGGCGGCTGCCAAGTGCCGATAGCCG    739

BSNT_04090___    743 GCTA---CTCCGTGTTAAATGGACAGGATGAAATTGAAATGACAGGGCTT    789
                     |.||   .||||   |.||||..|.||||||..|||||.||...||.|||
RBAM_025210__    740 GGTATGCGTCCG---TCAATGACCGGGATGAGGTTGAATTGGTCGGTCTT    786

BSNT_04090___    790 GTCGCTTCACCTGACGGCAAAATCATTTTTAAAGAAACCGTCACCGGAAA    839
                     |||||.||.||.|||||.||.|..||||.|||||||||.|...|.|||.|
RBAM_025210__    787 GTCGCGTCTCCGGACGGAAAGACGATTTATAAAGAAACAGCGGCGGGACA    836

BSNT_04090___    840 CGATCCGGAGGAAGTAGGAAAGCGCTGTGCCGCTCTTATGGCTGACAGAG    889
                     .||||||||.|||.|.|||||.||||||||.||..|.|||.||||.|.||
RBAM_025210__    837 TGATCCGGAAGAAATCGGAAAACGCTGTGCGGCGATGATGTCTGAAAAAG    886

BSNT_04090___    890 GAGCAAAAGATTTAATTGATCGTGTAAAACGGGAGCTTGATGAGGATGGA    939
                     ||||.||||..|||||.||..|||||||||.||||||.|||.|||||||.
RBAM_025210__    887 GAGCCAAAGCATTAATCGACAGTGTAAAACAGGAGCTCGATCAGGATGGC    936

BSNT_04090___    940 AAATGA    945
                     ||||||
RBAM_025210__    937 AAATGA    942


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04090 and RBAM_025210

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
