Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04085 and RBAM_025170
See
Amino acid alignment /
Visit
BSNT_04085 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:27
# Commandline: needle
# -asequence dna-align/BSNT_04085___spoVID.1.9828.seq
# -bsequence dna-align/RBAM_025170___spoVID.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04085___spoVID-RBAM_025170___spoVID.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04085___spoVID-RBAM_025170___spoVID.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04085___spoVID
# 2: RBAM_025170___spoVID
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2060
# Identity: 1197/2060 (58.1%)
# Similarity: 1197/2060 (58.1%)
# Gaps: 556/2060 (27.0%)
# Score: 3386.5
#
#
#=======================================
BSNT_04085___ 1 TTGCCGCAAAATCATCGATTGCAATTTTCTGTAGAAGAATCGATCTGTTT 50
||||||||.|||||.|||||||||||||||||.||||||||.||||||||
RBAM_025170__ 1 TTGCCGCATAATCACCGATTGCAATTTTCTGTTGAAGAATCAATCTGTTT 50
BSNT_04085___ 51 CCAAAAAGGACAGGAAGTTTCTGAACTGCTTTCTATTTCATTAGATCCTG 100
|||||||||||||||||||||||||.|.|||||.|||||||||||.||||
RBAM_025170__ 51 CCAAAAAGGACAGGAAGTTTCTGAATTACTTTCGATTTCATTAGACCCTG 100
BSNT_04085___ 101 ATATTAGGGTTCAGGAAGTAAATGATTATGTATCAATCATAGGATCGCTT 150
|.||.|||||.||||||||||||||||||||.|||||.|.||||||..|.
RBAM_025170__ 101 ACATCAGGGTGCAGGAAGTAAATGATTATGTCTCAATTAAAGGATCATTA 150
BSNT_04085___ 151 GAACTTACAGGTGAGTACAACATAGATCAAAACAAACATACCGAAGAGAT 200
||||||||.||.|||||||||||||||||.|.||..|||...||||||.|
RBAM_025170__ 151 GAACTTACTGGCGAGTACAACATAGATCACAGCAGTCATTTTGAAGAGCT 200
BSNT_04085___ 201 TTATA--CAGATAAGCGATTTGTTGAACAAGTCAGAAAGAGAGAGGATGG 248
|.||| .||.|.||..| |||.||..||||.||...|||.||||||||
RBAM_025170__ 201 TGATAGGGAGCTGAGGCA--TGTAGAGGAAGTGAGGGCGAGGGAGGATGG 248
BSNT_04085___ 249 AAGTGCGGAACTGACTCACTGTTTTCCTGTGGATATTACCATTCCGAAAA 298
.|..||.||.||.|.|||.|||||.||.|||||.||.||.||||||||||
RBAM_025170__ 249 CACGGCCGAGCTCATTCATTGTTTCCCGGTGGACATCACGATTCCGAAAA 298
BSNT_04085___ 299 ATAAAGTGAGCCATTTACAGGATGTCTTCGTCTTTATTGACGCATTTGAC 348
|||||||||||||..|..|.|||||.|||||.|||||.||.||.|||||.
RBAM_025170__ 299 ATAAAGTGAGCCACCTCAATGATGTTTTCGTATTTATCGATGCCTTTGAT 348
BSNT_04085___ 349 TATCAATTGACGGATTCGCGCATTTTAACAATTCAAGCTGATTTAGCGAT 398
|||||..||||||||||..|.||.|||||.||||||||||||||.||.||
RBAM_025170__ 349 TATCAGCTGACGGATTCAAGGATCTTAACCATTCAAGCTGATTTGGCAAT 398
BSNT_04085___ 399 CGAAGGGCTTTTGGACG-ATACGCAAGAC-AAAGAGCCGGAGATACCTTT 446
.||||||||..|.||.| ||.|| ||.| ||||||||||||||.|||||
RBAM_025170__ 399 TGAAGGGCTGCTTGAGGAATCCG--AGCCAAAAGAGCCGGAGATCCCTTT 446
BSNT_04085___ 447 ATATGAAGCTCCTGCGGCATT---CAGGGAGGAA------GAGCTTTCAG 487
.||.|..||.||| |.||| |||.||.||| .|.|||
RBAM_025170__ 447 GTACGTGGCGCCT---GAATTTGCCAGAGAAGAAATGATCAATCTT---- 489
BSNT_04085___ 488 AGCCGTCGGCA-CATAGTGTAGTA-GAA---GAACCGG-----GTGCAT- 526
|||| |.|| |||..|| ||.| ||| |||||.| .|| ||
RBAM_025170__ 490 -GCCG--GACATCATTCTG-AGGACGAAAACGAACCAGAATTAATG-ATA 534
BSNT_04085___ 527 ---CATCGG----------------------CAGAGGAAGCAGTTCTTCA 551
|||..| ||||.||||||| ||
RBAM_025170__ 535 CGCCATGAGCCTGAAATACCTTTGACTGTATCAGAAGAAGCAG-----CA 579
BSNT_04085___ 552 GCATGAACCGCCAGCCGAAC-CGCCAGAACTTTTTATCTCGAAAGCGGGC 600
||.|||.| |.||..|||| .|..|||| ||| |
RBAM_025170__ 580 -CAAGAAAC-CAAGAAGAACGAGGAAGAA------ATC-----------C 610
BSNT_04085___ 601 CTCCGTGAAGAA--CTGGAGACAGAAAAAGCAGAATCTGAGCCGCC---- 644
|.||.|.||..| ||||||..|| ||.|||||.| |||.|||
RBAM_025170__ 611 CGCCTTTAATCAGGCTGGAGGAAG-AAGAGCAGGA----AGCAGCCCCGA 655
BSNT_04085___ 645 ---TGA---ATCGGTTGCTTCAGAACCAGAGGCCAGAGAA--------GA 680
||| |.||| |||..|||| ||| ||| ||
RBAM_025170__ 656 TTTTGAGGGAGCGG--------GAAGAAGAG--CAG-GAAACTGCCCCGA 694
BSNT_04085___ 681 T-----GTGAA--AGAGGAAGAAGAGTCAGAAGAGCTTGCTGTGCC---- 719
| |.||| .||.||||||||| |||.||| |||..||
RBAM_025170__ 695 TTTTGAGGGAACGGGAAGAAGAAGAG-CAGGAGA-----CTGCCCCGATT 738
BSNT_04085___ 720 ----GGAAACGG-------------AGGTTCGTGC--------TGAATCG 744
||.||||| |||....||| ||| |
RBAM_025170__ 739 CTGAGGGAACGGGAAGAAGAAGAGCAGGAGACTGCCCCGATTTTGA---G 785
BSNT_04085___ 745 GAAAC----AGAAGAATCTGAGCCAGAACCTGATCC----TT-------- 778
|.||| ||||||| ||||..|||.|||..|| ||
RBAM_025170__ 786 GGAACGGGAAGAAGAA---GAGCAGGAAGCTGCCCCGATTTTGAGGGAGC 832
BSNT_04085___ 779 ---CAGAAATAGA---------------GATTC-AAGAGATCGTTAAAGC 809
.||||..||| ||||| .|||| |||
RBAM_025170__ 833 ACAAAGAAGAAGAGGAAGAAACTGCCCCGATTCTGAGAG--------AGC 874
BSNT_04085___ 810 A-AAAAAAGAAACGGCTGAGCCGGCAGCTGC----AAT-------AGCGG 847
| .||.||||| ||||.||.|||.|| |.| |||||
RBAM_025170__ 875 AGGAAGAAGAA------GAGCAGGAAGCAGCCCCGATTCTGAGGGAGCGG 918
BSNT_04085___ 848 ATGTTCGTGAAGAAGCAGACTCTCCAGC-GGAGACTG---AGCTTCGTGA 893
|||||||.|| ||| |||.|||| .|.|||
RBAM_025170__ 919 --------GAAGAAGAAG-------AGCAGGAAACTGCCCCGATTC---- 949
BSNT_04085___ 894 ACACGCCGGAGC----AGAAGAATCGCCTGCTTTGGAAGCTGAACTTCAT 939
.||.||||| ||||||| .|||.|
RBAM_025170__ 950 ---TGCGGGAGCGGAAAGAAGAA-------------GAGCAG-------- 975
BSNT_04085___ 940 TCAGAGACTG---TGATTGCAGAGG----AAAAAGAG-----GAAAC--- 974
||||||| .|||| |.|||| |..||||| |||||
RBAM_025170__ 976 ---GAGACTGCCCCGATT-CTGAGGGAGCAGGAAGAGGTGCCGAAACCTG 1021
BSNT_04085___ 975 -------AACAGAGTCTCCTAATCATGAATATGCGCTGC--GCCAAGAGG 1015
.||.|||.|||||..|| .||.|.| .||||.|.|
RBAM_025170__ 1022 TTTCCTTTACTGAGCCTCCTCCTC--------CCGTTTCCTTCCAACACG 1063
BSNT_04085___ 1016 CTCAAAA---TGAAGAAGC-----AGC--TCAATC--------------- 1040
...|||| .|||||||| ||| .|||||
RBAM_025170__ 1064 AAGAAAAGCCGGAAGAAGCTGAGGAGCCTGCAATCATGTCGGCTGTGAGG 1113
BSNT_04085___ 1041 ---GGA--------TCAGGCTGATCCTGCGCTTTGCCAAGAAGAGGCGGA 1079
||| |.|||.||||.|.|| |||||.|..|||
RBAM_025170__ 1114 AATGGACCTGTATTTGAGGATGATTCAGC---------AGAAGTGCAGGA 1154
BSNT_04085___ 1080 AGCG------GATGA-----AGC---TTTGGAGAGTGTATCAGAGGCCGC 1115
||.| ||||| ||| ||| |..|.|.|..|.|
RBAM_025170__ 1155 AGAGCCAAAAGATGATAACGAGCCGGTTT--------TCCCTGCGTTCAC 1196
BSNT_04085___ 1116 TCT--CTC--CAT--AGAAGATAGCA------GAGAAACAG------CTT 1147
||| ||| ||| |||| |.|.|| |.|.||||| |||
RBAM_025170__ 1197 TCTGACTCCGCATGCAGAA-AAACCAAAAATTGCGGAACAGCCCTTCCTT 1245
BSNT_04085___ 1148 CAGCTGTATATGTGGAGAATGACA-AAGCCGA------TTTCC------- 1183
|| |.|.|..|||.| |.|| |.||||| |.|||
RBAM_025170__ 1246 CA-----AAAAGAAGAGCA-GCCAGAGGCCGAGCCGCTTCTCCGTCAGAG 1289
BSNT_04085___ 1184 --ATTTCCAT-------CAAAAAAC-AAGCTCGGAG---GAGGCATCTCA 1220
|| ||| ||.||.|| |||.| ||| |.||..|.|||
RBAM_025170__ 1290 CGAT---CATGAGGCGGCAGAAGACGAAGAT--GAGCCTGCGGTTTTTCA 1334
BSNT_04085___ 1221 AGAAGAATTGCCTGAACCGGCATACCGTACCTTCCTGCCTGAA---CAAG 1267
|||||| ||..|..||.|..||.||....|||.|.||.||| ||.|
RBAM_025170__ 1335 AGAAGA---GCAGGCGCCCGTTTATCGCGAGTTCGTTCCGGAACAGCAGG 1381
BSNT_04085___ 1268 AAGAGGAGGATTCTTTTTATTCAGCG--CCTAAGCTGCTGGAGGAGGAAG 1315
|||||||| ||||| ||||| |||||||||||.||.||.||.|
RBAM_025170__ 1382 AAGAGGAG------TTTTA--CAGCGCTCCTAAGCTGCTTGAAGAAGAGG 1423
BSNT_04085___ 1316 AACAAGAGGAAG-AGAGCTTCGAAATTGAAGTGAGAAAAACACCATCAGC 1364
..||.||.|||| || |.|||||||||||.||.||
RBAM_025170__ 1424 CTCAGGATGAAGTAG-GGTTCGAAATTGAGGTAAG--------------- 1457
BSNT_04085___ 1365 TGAAGA-------GCCTAAGGAAGAAAC-----ACCTTTTCAA----TCC 1398
||||| |||..||||.||||| |.|.|.||.| ||.
RBAM_025170__ 1458 -GAAGATGGCGCCGCCGGAGGAGGAAACCGGGAAGCCTCTCGATTTGTCT 1506
BSNT_04085___ 1399 TTTCAG---------CTGCCTGAATCTTCTGAGACTGAAAGGAAGGAAAC 1439
|||||| ||||| |.||| ||||..|
RBAM_025170__ 1507 TTTCAGTTTTCCAAACTGCC------------GCCTG------AGGAGCC 1538
BSNT_04085___ 1440 GG---ATGCTG---TTCCTAGGGTTGCTCCTGCTGCTGAAACGAA----- 1478
|| |.|||| ..||| |.|..|||...|| |||||| |||
RBAM_025170__ 1539 GGCGCAAGCTGAACAGCCT-GAGCCGCTTAAGC--CTGAAA-GAAAGAAT 1584
BSNT_04085___ 1479 ---------------GGAACCTCAAACA-AAGGAAAGTGATAATTCTCTT 1512
||||| |.|.|| |||||||.|||.||.||||.|
RBAM_025170__ 1585 GAAGAAGCGGCACCGGGAAC--CGAGCAGAAGGAAAATGACAACTCTCAT 1632
BSNT_04085___ 1513 TATTTAACAAAACTCTTTACAAAAGAAGCGGATGAGTTTTCGAGAATGAA 1562
||.||.||||||.|.|||||||..||||..||..|||||||.||||||||
RBAM_025170__ 1633 TACTTGACAAAATTATTTACAAGGGAAGAAGAAAAGTTTTCAAGAATGAA 1682
BSNT_04085___ 1563 AATTTGTATTGTGCAGCAGGAAGATACGATCGAGCGTTTATGCGAACGGT 1612
|||||||||.||.||||||.|||||||.|||||.||..|.||.|||||.|
RBAM_025170__ 1683 AATTTGTATCGTACAGCAGCAAGATACTATCGACCGGGTGTGTGAACGAT 1732
BSNT_04085___ 1613 ATGAAATTACATCCCAGCAGCTGATCAGGATGAATTCTTTAGCCTTGGAT 1662
||||.||.||||||||||||||.|||||.|.||||.|||||.|.||.|||
RBAM_025170__ 1733 ATGACATAACATCCCAGCAGCTCATCAGAACGAATGCTTTATCGTTTGAT 1782
BSNT_04085___ 1663 GATGAATTAAAAGCAGGACAGATTCTCTATATTCCTCAATATAAAAATAG 1712
||.||..|..|||.|||.|||.||||.|||||.|||.|||||||.||.||
RBAM_025170__ 1783 GACGAGCTTGAAGAAGGTCAGCTTCTGTATATACCTGAATATAATAACAG 1832
BSNT_04085___ 1713 CCATGCGTAA 1722
||||||||||
RBAM_025170__ 1833 CCATGCGTAA 1842
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.