Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04074 and RBAM_025110
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:25
# Commandline: needle
# -asequence dna-align/BSNT_04074___spoIIB.1.9828.seq
# -bsequence dna-align/RBAM_025110___spoIIB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04074___spoIIB-RBAM_025110___spoIIB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04074___spoIIB-RBAM_025110___spoIIB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04074___spoIIB
# 2: RBAM_025110___spoIIB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1072
# Identity: 700/1072 (65.3%)
# Similarity: 700/1072 (65.3%)
# Gaps: 143/1072 (13.3%)
# Score: 2142.0
#
#
#=======================================
BSNT_04074___ 1 TTGAAAAAAAGAAAGAATAAAAAAAACAGTAAAGCCGCAGAAAAA----G 46
|||||||||||.||||..|||||..||||.|||||| ||||| |
RBAM_025110__ 1 TTGAAAAAAAGGAAGAGCAAAAAGCACAGCAAAGCC----AAAAACAATG 46
BSNT_04074___ 47 CCCTCAAGGTGACGATTAATGGAAAAGAAGAGACGGTTTACGAACAAG-A 95
||||.||.||.||.|||||.|||.|||||||.|||.|.||.|.||||| |
RBAM_025110__ 47 CCCTTAAAGTAACCATTAACGGACAAGAAGAAACGATGTATGGACAAGAA 96
BSNT_04074___ 96 GACGCCTGAGACAG-AGGC--GGATAAAAGCATGACATTTTCAAATTGGG 142
|| ||.||.|| |||| |||.||||.|.|.||||||||||||||||
RBAM_025110__ 97 GA----TGTGAAAGAAGGCGGGGAGAAAACCGTCACATTTTCAAATTGGG 142
BSNT_04074___ 143 AGGAAAAAAGACAGGCAGAACAAGAGGTTGCGGCATCCCAGGAACATCCT 192
|.||||.||.|.||||.||.||.|||...||.||||||||.|||.||||.
RBAM_025110__ 143 AAGAAACAAAAAAGGCGGAGCAGGAGACCGCCGCATCCCATGAAGATCCG 192
BSNT_04074___ 193 GATGAAGATGAATTCAATTGGGAT--TCAGAGGAAGAC-AAGGTGTTTAA 239
.|.|||||.||.|||||||||||| |.|||.|||..| .||||.|||.|
RBAM_025110__ 193 AAAGAAGAAGATTTCAATTGGGATCATGAGAAGAATTCTGAGGTATTTGA 242
BSNT_04074___ 240 AGAGGACCCAAAAGTTGTTCCTCCTTTTCAAAAGAAAAAAACAAAGC--- 286
|||.|||||.|||||.|||||.||.|..||.|||||||||| |..||
RBAM_025110__ 243 AGATGACCCGAAAGTCGTTCCGCCATACCAGAAGAAAAAAA-ACGGCCCT 291
BSNT_04074___ 287 ---TTTATGCAAAAGGAAAGACCGG--GGCTGCCAAACCGGTAAAAAGAG 331
|||..|.|||| |||| |.| |.||.| .||.||.||||.||
RBAM_025110__ 292 CATTTTCCGAAAAA--AAAG--CAGCCGTCTTC---TCCAGTTAAAAAAG 334
BSNT_04074___ 332 TGGCCGCGACGATTGCCTTCGCGGCTGTCATTGGCACTGGATTAGGGCTA 381
.||.|.||||.||||||.|.||||||||..|.|||||.||..|.||.||.
RBAM_025110__ 335 CGGTCACGACAATTGCCGTTGCGGCTGTTTTAGGCACCGGGCTCGGCCTT 384
BSNT_04074___ 382 TTCGCGTTAAACATATCGGGGAATAAAGAAGCGTCAGCACCGGCCTCTTT 431
.||||.|||||.||.|||||.|.|||||||||.||.||.||.||.||
RBAM_025110__ 385 GTCGCCTTAAATATGTCGGGAAGTAAAGAAGCCTCCGCTCCAGCATC--- 431
BSNT_04074___ 432 AG-------AGGATTCTCTA-GGCAGCCAAACGGCAAAAGCAGGGGATAC 473
|| ||| |||.|.| ||||| |||||.|||||.||.|||..
RBAM_025110__ 432 AGCTGACAAAGG-TTCACAAGGGCAG----ACGGCGAAAGCGGGAGATGT 476
BSNT_04074___ 474 TTCAACTGATAAA---CAAACTTCAGGCACAGAAAAACAAGCGGCGCAAA 520
|||.|..||.||| .||||..|.||||||| .||..|||.||.
RBAM_025110__ 477 TTCTAAAGACAAATCGGAAACAGCCGGCACAG------GAGATGCGGAAT 520
BSNT_04074___ 521 CT---GAAGGTACATATAAAACATACGCTGTACAAGCCGGAAAATTTTCA 567
|| ||.||.|..|||||||||||.||.||.||.|||||||||||||||
RBAM_025110__ 521 CTTCAGAGGGAAATTATAAAACATATGCGGTGCAGGCCGGAAAATTTTCA 570
BSNT_04074___ 568 AATGAAAAGGGTGCCGAAAC----GTTAACAGAACAATTGACCGAAAAAG 613
...|||||.||.||..|||| ||| ||.||..||||.|||||||
RBAM_025110__ 571 TCAGAAAAAGGAGCGCAAACCCTTGTT----GACCAGCTGACTGAAAAAG 616
BSNT_04074___ 614 GATATTCCGCCGTGTCACTGTCAAAGGATGACGGGTATACGTATGTCATC 663
||||.||.|||||.||.|||.|.||.||.|||||.||.||.||.||.|||
RBAM_025110__ 617 GATACTCGGCCGTCTCTCTGGCTAAAGAAGACGGATACACATACGTGATC 666
BSNT_04074___ 664 G-CGGGCTT--AGCCAGTGATAAGGATGTCTCACAGCAGTTAGGACAGGT 710
| ||||||| ||| |..|.||.|.| |.||||||||.||.||.|||..
RBAM_025110__ 667 GCCGGGCTTGCAGC--GGAAAAAAGCT-TATCACAGCAATTGGGTCAGAC 713
BSNT_04074___ 711 TTTAATCGACAGTGATTTTGAAGCCTGGGGAGGCAAGGAGCTTTCCTTAT 760
..|.||.|||..|||||||||.||.|||||.||.||.|||||...|||..
RBAM_025110__ 714 ACTGATAGACCATGATTTTGAGGCTTGGGGCGGAAAAGAGCTCAGCTTTG 763
BSNT_04074___ 761 CAATAGAGTCAGATATGAC----AGATTCTTTTAAGGAAACAGCGGAGCT 806
|..|.||.|||| ||| |||.||||||||..||.||.|.|||||
RBAM_025110__ 764 CTGTCGATTCAG----GACTGGAAGACTCTTTTAAACAAGCATCTGAGCT 809
BSNT_04074___ 807 TGCAGCAAAGGCGATTCTCGGCGAAGACATTACAAAAGCG--AGTGTAGA 854
..|.||.||.||||||..||||.||||..||.|||||.|| ||||
RBAM_025110__ 810 CTCCGCCAAAGCGATTACCGGCAAAGATCTTTCAAAAACGGAAGTG---- 855
BSNT_04074___ 855 GAAAATAGAAAAGTCTCTTGGTGA---AACAAAAGCGTCAGAAACAGGAG 901
|.||| |.||||||||.||||....|.||
RBAM_025110__ 856 -------------------GCTGAAGCAGCAAAAGCGGCAGACGGTGCAG 886
BSNT_04074___ 902 A-------GA-AAAAAGC-----GA-----TTTTGCAGGCTTTAAAGGAA 933
| || ||||||| || |..|.||.||..|.||.|||
RBAM_025110__ 887 ACGCCGCTGACAAAAAGCAGAAAGAGGCCGTGCTTCAAGCGCTGAAAGAA 936
BSNT_04074___ 934 TTAGAGGATCCAA------GTGCTGAAGCCGGGTGGAAGGCTCAGCAGCA 977
.|.|| || ||.|.|||.||||.|||||.||.||..|..|
RBAM_025110__ 937 CTGGA------AACGTCGGGTTCGGAATCCGGCTGGAAAGCCCAAAAAGA 980
BSNT_04074___ 978 GCTGTTAGCCGTCGTAAAATAA 999
|||.|||...||.||||||||.
RBAM_025110__ 981 GCTTTTAAGTGTTGTAAAATAG 1002
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