Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04059 and RBAM_025000

See Amino acid alignment / Visit BSNT_04059 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:24
# Commandline: needle
#    -asequence dna-align/BSNT_04059___ysxB.1.9828.seq
#    -bsequence dna-align/RBAM_025000___ysxB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04059___ysxB-RBAM_025000___ysxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04059___ysxB-RBAM_025000___ysxB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04059___ysxB
# 2: RBAM_025000___ysxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 350
# Identity:     272/350 (77.7%)
# Similarity:   272/350 (77.7%)
# Gaps:          19/350 ( 5.4%)
# Score: 1057.5
# 
#
#=======================================

BSNT_04059___      1 ATGATTCAGGCAACAATCAGAAGGTCTC---ATGATAAAGGCATATTGTC     47
                     ||||||.||||||||||..||||.||.|   ||||....|||||.|||||
RBAM_025000__      1 ATGATTGAGGCAACAATTCGAAGATCCCGGAATGACGGGGGCATTTTGTC     50

BSNT_04059___     48 TTTTGAAATGACGGGCCATGCGAATTTTGCTGAACATGGACAAGATCTTG     97
                     .||||||||||||||.|||||..||||||||||||||||||.||||||.|
RBAM_025000__     51 CTTTGAAATGACGGGACATGCCGATTTTGCTGAACATGGACGAGATCTCG    100

BSNT_04059___     98 TTTGTGCCGGAGTGACAGCCGTTGTGTTTGGAGCCGTTAACGCGGTCATT    147
                     |.||.|||||.||.||.||.||.||.||.|||||.||.||.|||||.|| 
RBAM_025000__    101 TATGCGCCGGGGTCACGGCTGTCGTTTTCGGAGCGGTCAATGCGGTTAT-    149

BSNT_04059___    148 GTGCTCGCGGGCT----TCGAGCCGCTTCTTGATATAGGGGAGGACGGGG    193
                        |.|||.||||    ||||.|||.|||||||||||||.||||||||||
RBAM_025000__    150 ---CGCGCTGGCTCCTCTCGAACCGATTCTTGATATAGGCGAGGACGGGG    196

BSNT_04059___    194 GGTATTTTTATTTTGAATTCCCTGAATCTCTTGATCCAGAGGCACGC---    240
                     |.|||||.||.|||||||||||||||.|...|||||   ||| |.||   
RBAM_025000__    197 GTTATTTCTACTTTGAATTCCCTGAAGCCGCTGATC---AGG-AAGCTTT    242

BSNT_04059___    241 -CAAAAAGCTCAGCTGCTGATTGAAGGCATGATTGTTTCGCTGGAGACAA    289
                      ||||||||.|||||||||||||||||||||||||||||.||.||.||.|
RBAM_025000__    243 GCAAAAAGCGCAGCTGCTGATTGAAGGCATGATTGTTTCTCTTGAAACGA    292

BSNT_04059___    290 TCGAACGGGATTACAAAGACAACTTGCGTGTGACCACAAACATAATATAG    339
                     ||||.||||||||||..||..||||.||..||||..|||||..|||||||
RBAM_025000__    293 TCGAGCGGGATTACAGTGAACACTTACGGTTGACTGCAAACCAAATATAG    342


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