Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04044 and RBAM_024890
See
Amino acid alignment /
Visit
BSNT_04044 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:23
# Commandline: needle
# -asequence dna-align/BSNT_04044___safA.1.9828.seq
# -bsequence dna-align/RBAM_024890___safA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04044___safA-RBAM_024890___safA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04044___safA-RBAM_024890___safA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04044___safA
# 2: RBAM_024890___safA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1361
# Identity: 822/1361 (60.4%)
# Similarity: 822/1361 (60.4%)
# Gaps: 337/1361 (24.8%)
# Score: 2506.5
#
#
#=======================================
BSNT_04044___ 1 TTGAAAATCCATATCGTTCAAAAAGGTGATTCGCTCTGGAAAATAGCTGA 50
||||||||.|||||||||||||||||.|||||||||||||||||||||||
RBAM_024890__ 1 TTGAAAATTCATATCGTTCAAAAAGGCGATTCGCTCTGGAAAATAGCTGA 50
BSNT_04044___ 51 AAAGTACGGAGTCGATGTTGAGGAAGTGAAAAAACTCAATACA-CAGCTT 99
|||.||||||||.|||.||||.||..|.||||||||.||| || ||||||
RBAM_024890__ 51 AAAATACGGAGTTGATCTTGAAGAGTTAAAAAAACTGAAT-CATCAGCTT 99
BSNT_04044___ 100 AGCAATCCAGACTTAATCATGCCTGGAATGAAAATAAAAGTGCCGTCAGA 149
|||||||||||||||||.||||||||||||||.|||||.|||||.|||||
RBAM_024890__ 100 AGCAATCCAGACTTAATTATGCCTGGAATGAAGATAAAGGTGCCTTCAGA 149
BSNT_04044___ 150 AGGAGTCCCGGTCAGAAAAGAGCCAAAAGCGGGCAAAAGTCCTGCGGC-- 197
||..||.||||||||||||||.||.||.|| ||||
RBAM_024890__ 150 AGCCGTTCCGGTCAGAAAAGAACCTAAGGC--------------CGGCTT 185
BSNT_04044___ 198 CGGGA-GTGTG-----AAGCAAGAACATCCATATGCGAAAGAGAAGCCTA 241
|||.| ||.|| |||||.||.|||||||||||.|||||.||.||.|
RBAM_024890__ 186 CGGAACGTCTGCGCATAAGCATGAGCATCCATATGCCAAAGAAAAACCGA 235
BSNT_04044___ 242 AATCCGTTGTCGATGTAGAAGACACAAAGCCGAAAGA---AAAGAAGTCC 288
||||.|||||.||..|.||||||||.|..|||.|||| ||||..|||.
RBAM_024890__ 236 AATCAGTTGTGGACATTGAAGACACCATACCGGAAGAACCAAAGCCGTCA 285
BSNT_04044___ 289 ATGCCGTATGTCCCGCCGATGCCTAATTTGCAGGAAAATGTGTACCCTGA 338
||.||||||||.|||||.||.|||.|...|||.|||||||||...||.||
RBAM_024890__ 286 ATTCCGTATGTGCCGCCAATCCCTGAAAAGCATGAAAATGTGCTGCCGGA 335
BSNT_04044___ 339 AGCTGATGTGAACGATTATTA----TGATATGAAACAGCTTTTCCAGCCT 384
|||||||.|||||.|.||||| | ..||.|||||.||.|||||.
RBAM_024890__ 336 AGCTGATATGAACCAATATTACCCGT----CCAATCAGCTGTTTCAGCCG 381
BSNT_04044___ 385 TGGTCGCCTCCTAAACCGGAGGAGCCGAAAAAACATCATGACG------- 427
||||||||||||||.||||||||.|||...|.||||..||.||
RBAM_024890__ 382 TGGTCGCCTCCTAAGCCGGAGGAACCGGTGACACATTTTGTCGAGCCGAA 431
BSNT_04044___ 428 -GAAATATGGATCATATGTATCATATGCAAGACCAAT----TTCCACAAC 472
||||.| || |||.|| |||| |||||||||
RBAM_024890__ 432 AGAAAAA--GA---------------GCATGA-CAATAACATTCCACAAC 463
BSNT_04044___ 473 AGGAGGCTATGAGTAATATGGAAAATGCAAATTATCCGAATATGCCTAAT 522
||||||..||||..||.||||||||.||.|||||.||| |||
RBAM_024890__ 464 AGGAGGAAATGATCAACATGGAAAACGCGAATTACCCG---------AAT 504
BSNT_04044___ 523 ATGCCAAAGGCGCCAGAGGTAGGCGG-----TGTAGAAGAGGAAAACG-- 565
||||||||||||||.|| ||.||| || |||||.|||||||
RBAM_024890__ 505 ATGCCAAAGGCGCCTGA---AGCCGGAAAGATG--GAAGAAGAAAACGCC 549
BSNT_04044___ 566 ----TTCAT-------------CACACAGTTCCGAATATGCCG------- 591
.|||| ||.||| ||||||||.|.|||
RBAM_024890__ 550 GCTTATCATCTGCCGAACATGCCAAACA-TTCCGAATGTCCCGTTTCCGA 598
BSNT_04044___ 592 --ATGCCGGCTGTT---CAGCCTTATTAT-CATTATCCG-----GCTCAT 630
||||||||.||| |.|.||| |||| |||||.||| |..|||
RBAM_024890__ 599 ATATGCCGGCCGTTGAACCGTCTT-TTATGCATTACCCGATGCCGTGCAT 647
BSNT_04044___ 631 ---TTCGTACCGTGTCCGGTGCCTGTTTCGCCAATTTTTCCAGGATCAGG 677
|| || ||.||||||||.||.||..|.||.||..|.||.||.||.||
RBAM_024890__ 648 GCCTT-GT-CCTTGTCCGGTTCCGGTGACACCGATGCTGCCGGGTTCGGG 695
BSNT_04044___ 678 ATTATGCTATCCGTACTATCCGGCA------------------------- 702
|.|||||.||||.|.||..||||.|
RBAM_024890__ 696 ACTATGCCATCCATGCTTCCCGGTAGGCGGAGGTTTCGGCGGTTTTGGAG 745
BSNT_04044___ 703 ---------CAAGCTTATCCAATGCAT-CCGATGC---------ATGGAT 733
.|.|||| |||..| ||| ||||||| |.||||
RBAM_024890__ 746 GAGGTTTTGGAGGCTT-TCCGGT-CATGCCGATGCCGTTACCGTACGGAT 793
BSNT_04044___ 734 ---ACCAGCCAGGCTTTGTATCGCCTC-AGTATGACCCGGGT-------- 771
|.||.||.||.|||| .|||.| || |||||
RBAM_024890__ 794 TCCATCATCCGGGATTTG---GGCCGCAAG-------CGGGTTACGGTGA 833
BSNT_04044___ 772 -TATGAAAACCAGCATCATGAAAA--CAG-CCATCACGGACATTACGGTT 817
||||||||||||...|||||||| ||| .||| .||.|.||||
RBAM_024890__ 834 ATATGAAAACCAGGCCCATGAAAATGCAGAGCAT------TATGATGGTT 877
BSNT_04044___ 818 CATACGGTGCGCCGCAATACGCATC----TCCGGCTTATGGATCTCCGTA 863
| .||||| |.|||| ||..|||||||
RBAM_024890__ 878 C------------------TGCATCTGGTTTCGGC----GGTGCTCCGTA 905
BSNT_04044___ 864 TGGACATATGCCGTAT---GGCCCTTATTACGGCAC--TCCCCAA----- 903
.||.||.||||||||| |||...|||| ||.||| |.|.|||
RBAM_024890__ 906 CGGTCAAATGCCGTATTACGGCGGATATT-CGTCACATTACGCAAACGCG 954
BSNT_04044___ 904 ----GTAATG--GGAGCATACCAGCCTG----CTGCGGCT--CATGGTT- 940
.|.||| |||..|||..||..|| .||||||| ||||.||
RBAM_024890__ 955 CCTCATCATGATGGAAAATATAAGGATGATGATTGCGGCTGCCATGATTC 1004
BSNT_04044___ 941 ACATGCCA-TACAAAGATCATGACGACTG------------CGGCT---- 973
|||| || .||.|..|||||.||.||.| .||.|
RBAM_024890__ 1005 ACAT--CACCACCACCATCATCACCACGGTTCACATCATCATGGTTCACA 1052
BSNT_04044___ 974 --GTGACGG------TGATCATCAGCCATATTTCTCTGCGCCTG----GC 1011
.|.|.|| |.|||||||..||.||.| ||||| ||
RBAM_024890__ 1053 TCATCATGGTTCACATCATCATCACGCAAATAT------GCCTGTGCAGC 1096
BSNT_04044___ 1012 C--ATTCGGGAATGGGAGCTTATGGAAGCCC------TAATATGCCATAT 1053
| ||.||...|||||.|| |||..| |..||||||.|||
RBAM_024890__ 1097 CGTATCCGAATATGGGCGC------AAGTGCCGGATATTTTATGCCTTAT 1140
BSNT_04044___ 1054 GGCACAGCTAACCCAAATCCAAACCCATATTCGGCAGGAGTTTCTATGCC 1103
|||..|| ||||||| |.|||||
RBAM_024890__ 1141 GGCGGAG------CAAATCC-----------------------CAATGCC 1161
BSNT_04044___ 1104 AATGACGAATCAGCCTTCTGTAAACCAAATGTTTGGCCGGCCGGAAGAAG 1153
..|.||||||||||...|..|||.|||.|.||.||.|||||||||||||
RBAM_024890__ 1162 -GCGCCGAATCAGCCGAGTCCAAATCAAGTATTCGGACGGCCGGAAGAAG 1210
BSNT_04044___ 1154 AAAATGAGTGA 1164
||.|.||.|.|
RBAM_024890__ 1211 AAGAAGATTAA 1221
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.