Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04041 and RBAM_024880
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:23
# Commandline: needle
# -asequence dna-align/BSNT_04041.1.9828.seq
# -bsequence dna-align/RBAM_024880___coxA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04041-RBAM_024880___coxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04041-RBAM_024880___coxA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04041
# 2: RBAM_024880___coxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 657
# Identity: 347/657 (52.8%)
# Similarity: 347/657 (52.8%)
# Gaps: 201/657 (30.6%)
# Score: 886.0
#
#
#=======================================
BSNT_04041 1 TTGGGTAAAAAAATGACGATCGCTAGCCTGATTCTAATGACAGCCGGCTT 50
RBAM_024880__ 0 -------------------------------------------------- 0
BSNT_04041 51 AACAGCTTGCGGAGCAAACGATAATGCTATGAATGA--TACGC-GCAATA 97
|||||||| .|||| .||||.
RBAM_024880__ 1 ----------------------------ATGAATGACGGACGCTACAATC 22
BSNT_04041 98 ACGACAATACCCGTCCAATCGGATATTATTCAAATGAAAATG---ACGCC 144
| |.|| ||.|||||..|||||||||||||.|||||.|||| |||.|
RBAM_024880__ 23 A-GTCA--ACACGTCCGGTCGGATATTATTCGAATGATAATGGTAACGGC 69
BSNT_04041 145 GATAGA---CAGGGAGACGGAATCGACCACGATGGTCCTGTTTCTGAATT 191
||| ||| .|||||||.|||||..|.||.||.|||||||||.|
RBAM_024880__ 70 ---AGAGGCCAG---TACGGAATGGACCATCAAGGACCCGTTTCTGAAAT 113
BSNT_04041 192 AATGGAGGATCAGAACGACGGTAACCGAAACACCACGAATGTAAATAACC 241
.|||||..|.|..||||.|.|| |..||.||.||.|||||
RBAM_024880__ 114 GATGGAAAACCGAAACGGCCGT---CATAATACGACAAATGT-------- 152
BSNT_04041 242 GT--GACC-GTGTTACTGC------TGACGATCGTGTTCCTTTGGCAACT 282
|| |||| | ||| || ||||| |.|||||.||..|.||.
RBAM_024880__ 153 GTCCGACCAG---TAC-GCGCCTAATGACG---GGGTTCCGTTAACGACG 195
BSNT_04041 283 GACGGAACATATAACAACACGAATAACCGAAACATGAAT-------CGGA 325
|||||.||||||||| ..||||||..|.||| ||
RBAM_024880__ 196 GACGGCACATATAAC---------GGCCGAAATGTCAATACGCCGCCG-- 234
BSNT_04041 326 ATGCAGCGA------ACAACGGGTATGACAACCAAGAAAACAGAAGACTG 369
|||||.| |.||.||||||||||||...|||||||..||..||
RBAM_024880__ 235 --GCAGCAATGTCTTATAATGGGTATGACAACGCCGAAAACATCAGGTTG 282
BSNT_04041 370 GCTGCAAAAATTGCCAACCGTGTGAAACAAGTGAAAAACGTCAATGACAC 419
||.||||||.||||.|||||.||||||.||||.|||..|||..|.||.|.
RBAM_024880__ 283 GCGGCAAAAGTTGCAAACCGCGTGAAAAAAGTAAAAGGCGTACAGGATAG 332
BSNT_04041 420 ACAAGTTATGGTATCGGA-TGAC---CGAGTAGTTATCGCAGTCAAAAGC 465
.||.||.||.|| || |||| .||||.||.||.||.||||.|
RBAM_024880__ 333 TCAGGTCATCGT----GACTGACACGAGAGTCGTCATTGCCGTCAGA--- 375
BSNT_04041 466 CACAGAGAGTTC--------ACAAAGTCTGACAGAGATA---ATGTCGTA 504
|||.| || ||.||...||| .|||| |||||
RBAM_024880__ 376 -ACAAA----TCATCCTTTTACGAAAAATGA---TGATAAACATGTC--- 414
BSNT_04041 505 AAAGCA-GCGCGC----AACTATGCAAATGGCCGTGAC-GTCCAGGTATC 548
||.|| ||| || ||.|..||..|.|||||| || .|.||.||.|.
RBAM_024880__ 415 -AAACATGCG-GCCAAAAAGTTCGCGGACGGCCGT-ACAATTCAAGTGTT 461
BSNT_04041 549 AACAGATAAAGGGCT--GTTCAGAAAACTTCATAAAATG------AACAA 590
.||.||.|| .||| .||.|.|||.||.||..|.||| ||||.
RBAM_024880__ 462 TACCGACAA--CGCTACTTTTACAAAGCTGCAAGACATGAACAGAAACAG 509
BSNT_04041 591 CCGCTAG 597
|||.||.
RBAM_024880__ 510 CCGTTAA 516
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