Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04022 and RBAM_024840
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:22
# Commandline: needle
# -asequence dna-align/BSNT_04022___ruvB.1.9828.seq
# -bsequence dna-align/RBAM_024840___ruvB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04022___ruvB-RBAM_024840___ruvB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04022___ruvB-RBAM_024840___ruvB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04022___ruvB
# 2: RBAM_024840___ruvB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1009
# Identity: 803/1009 (79.6%)
# Similarity: 803/1009 (79.6%)
# Gaps: 8/1009 ( 0.8%)
# Score: 3181.0
#
#
#=======================================
BSNT_04022___ 1 ATGGATGAACGGCTCGTCTCAAGTGAAGCAGACAACCATGAATCAGTGAT 50
|||||||||||||||||.||||||||||||||||.||||||||||.|.||
RBAM_024840__ 1 ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAAT 50
BSNT_04022___ 51 AGAGCAAAGCCTGAGGCCGCAAAATCTGGCACAGTATATCGGGCAGCATA 100
.|||||||||||.||||||||.|||||.||.|||||||||||.||..|.|
RBAM_024840__ 51 CGAGCAAAGCCTCAGGCCGCAGAATCTCGCCCAGTATATCGGCCAAAAGA 100
BSNT_04022___ 101 AGGTAAAAGAAAATTTGCGCGTGTTTATAGATGCGGCGAAAATGAGACAG 150
||||.|||||||||.|||||||||||||.|||||||||||||||||.|||
RBAM_024840__ 101 AGGTGAAAGAAAATCTGCGCGTGTTTATCGATGCGGCGAAAATGAGGCAG 150
BSNT_04022___ 151 GAGACGCTGGATCATGTTCTTCTGTACGGGCCGCCCGGACTCGGAAAAAC 200
||.||||||||.||.||||||.|.||||||||.||.||.|||||.|||||
RBAM_024840__ 151 GAAACGCTGGACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGGAAAAC 200
BSNT_04022___ 201 AACGCTTGCTTCGATTGTTGCTAATGAAATGGGAGTGGAATTGCGGACGA 250
|||||||||.||.||.||.||.|||||.|||||.|||||..|||||||||
RBAM_024840__ 201 AACGCTTGCGTCTATCGTGGCCAATGAGATGGGTGTGGAGATGCGGACGA 250
BSNT_04022___ 251 CATCAGGGCCTGCGATTGAAAGGCCTGGTGATTTGGCTGCTATATTAACG 300
|||||||.||.||.||.|||||.||.||.||||||||.||.||.||.|||
RBAM_024840__ 251 CATCAGGTCCCGCCATCGAAAGACCGGGAGATTTGGCAGCCATTTTGACG 300
BSNT_04022___ 301 GCGCTGGAACCGGGAGATGTATTATTTATTGATGAAATACATAGGCTGCA 350
|||||.|||||.||.|||||..|.|||||.||.|||||.||.||||||.|
RBAM_024840__ 301 GCGCTCGAACCAGGGGATGTGCTGTTTATAGACGAAATTCACAGGCTGAA 350
BSNT_04022___ 351 CAGATCGATCGAAGAGGTGCTTTATCCTGCAATGGAAGACTTTTGCCTGG 400
|.|.||.||.||.||.|||||.||.||.||.|||||.||.||.|||||.|
RBAM_024840__ 351 CCGCTCAATTGAGGAAGTGCTGTACCCGGCGATGGAGGATTTCTGCCTTG 400
BSNT_04022___ 401 ACATTGTGATTGGCAAAGGCCCATCTGCCCGCTCGGTTCGCCTCGACCTT 450
|.||.||.|||||.||||||||.||.||||||||.||.||.|||||||||
RBAM_024840__ 401 ATATCGTCATTGGAAAAGGCCCGTCCGCCCGCTCCGTCCGTCTCGACCTT 450
BSNT_04022___ 451 CCGCCTTTTACGCTGGTGGGAGCCACGACGAGGGTGGGGCTTTTGACGGC 500
||.|||||||||||.||.|||||.|||||.|||||.||..|.|||||.||
RBAM_024840__ 451 CCCCCTTTTACGCTTGTAGGAGCAACGACAAGGGTCGGATTATTGACCGC 500
BSNT_04022___ 501 TCCTTTAAGAGACAGATTCGGCGTAATGTCTCGCCTTGAGTACTATACAC 550
.||..|.||||||.|.|||||.||..||||.||||||||.||||||||.|
RBAM_024840__ 501 ACCGCTCAGAGACCGGTTCGGGGTGCTGTCGCGCCTTGAATACTATACGC 550
BSNT_04022___ 551 AAGAAGAACTGGCGGATATTGTCACAAGAACCGCTGATGTATTCGAGGTT 600
|.|||||.|||.|.|||||.||..|||||||.|||||.||.||.||.||.
RBAM_024840__ 551 AGGAAGAGCTGACAGATATCGTGTCAAGAACGGCTGACGTTTTTGAAGTG 600
BSNT_04022___ 601 GAGATTGATAAACCGTCGGCTCTTGAAATTGCAAGAAGATCGAGAGGGAC 650
||.||.||.|||.|..|||||||.|||||.||.|||.|.||.||.||.||
RBAM_024840__ 601 GATATCGAAAAAGCACCGGCTCTGGAAATCGCCAGACGGTCAAGGGGAAC 650
BSNT_04022___ 651 GCCCCGCGTGGCGAACCGCCTGCTGAGAAGGGTGCGCGATTTCGCCCAAG 700
|||.||.||.||.|||||.||.||.|||||||||.|.|||||.|||||.|
RBAM_024840__ 651 GCCGCGGGTTGCAAACCGGCTTCTCAGAAGGGTGAGAGATTTTGCCCAGG 700
BSNT_04022___ 701 TGCTGGGTGACAGCAGGATTACGGAAGACATTTCTCAGAATGCGCTGGAG 750
||||.||.||||||.|.||.||||||||.||..||||..|.|||||.||.
RBAM_024840__ 701 TGCTCGGCGACAGCCGCATCACGGAAGAAATCGCTCACGACGCGCTCGAA 750
BSNT_04022___ 751 CGGCTTCAGGTTGA-CCGTCTCGGTTTGGATCATATTGATCATAAGCTGC 799
||.|||||.||.|| .|| |||||..|.||.|||||.||.||||||||||
RBAM_024840__ 751 CGTCTTCAAGTCGATGCG-CTCGGCCTTGACCATATCGACCATAAGCTGC 799
BSNT_04022___ 800 TGATGGGCATGATCGAAAAATTCAACGGCGGCCCAGTAGGCCTTGATACG 849
||||||||||||||||||||||||.||||||.||.||.||||||||||||
RBAM_024840__ 800 TGATGGGCATGATCGAAAAATTCAGCGGCGGTCCCGTCGGCCTTGATACG 849
BSNT_04022___ 850 ATTTCAGCTACCATCGGCGAGGAATCGCATACGATTGAAGACGTATATGA 899
|||||.||.||.||||||||.|||.|||||||.||.||.||.||.||.||
RBAM_024840__ 850 ATTTCCGCGACAATCGGCGAAGAACCGCATACAATAGAGGATGTGTACGA 899
BSNT_04022___ 900 ACCATATCTGCTGCAAATTGGATTTATACAAAGAACGCCGCGTGGAAGGA 949
|||.|||||||||||.||.||||||.|.||.||.||||||.|.|||.||.
RBAM_024840__ 900 ACCGTATCTGCTGCAGATCGGATTTCTTCAGAGGACGCCGAGGGGACGGG 949
BSNT_04022___ 950 TCGTGACACCGGCCGTTTATCATCATTTCCAAATGGAGGCTC---CCCGA 996
|||||||.|||||.||.|||.|.|||||.|.|.|||||||.| ||||
RBAM_024840__ 950 TCGTGACTCCGGCTGTGTATGAACATTTTCGATTGGAGGCGCCCGCCCG- 998
BSNT_04022___ 997 TATGACTGA 1005
|||||||
RBAM_024840__ 999 --TGACTGA 1005
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