Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04009 and RBAM_024750
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:21
# Commandline: needle
# -asequence dna-align/BSNT_04009___yrvC.1.9828.seq
# -bsequence dna-align/RBAM_024750___yrvC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04009___yrvC-RBAM_024750___yrvC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04009___yrvC-RBAM_024750___yrvC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04009___yrvC
# 2: RBAM_024750___yrvC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 516
# Identity: 355/516 (68.8%)
# Similarity: 355/516 (68.8%)
# Gaps: 36/516 ( 7.0%)
# Score: 1115.0
#
#
#=======================================
BSNT_04009___ 1 ATGAGGGTTCGCGAATCAGAGCTGCCGGGCATAGGACAAAAAGTTGAAAT 50
||||..|||||.||.||.|||||.||||||||.|||||.|||||.|||.|
RBAM_024750__ 1 ATGAACGTTCGTGAGTCGGAGCTTCCGGGCATCGGACAGAAAGTAGAAGT 50
BSNT_04009___ 51 GATTACTAGAAACCGTGATAAAATTTCA--ATTATCATTCATCATGACGG 98
.|||||.|.|||.|..||||||| ||| |||||..|||||.|||||||
RBAM_024750__ 51 CATTACGAAAAATCACGATAAAA--TCAGTATTATTCTTCATGATGACGG 98
BSNT_04009___ 99 ACGGAGAGAGCTTTACTATTTTGACGAAAACGACCATGAGGAATGTGTTG 148
..|.|.||||||.||.||.||.||.||.||.||.|||||.|||||..|.|
RBAM_024750__ 99 CAGAAAAGAGCTCTATTACTTCGATGAGAATGATCATGACGAATGCTTGG 148
BSNT_04009___ 149 CCTCCGTGCAGTTTGATGACGCTGAAGCAAGGCAAATGTCTGCAATTCTT 198
|.|||||..|.|||.|.||||..||.||.|||||.||.||.||||||.|.
RBAM_024750__ 149 CATCCGTTGAATTTAACGACGAAGAGGCGAGGCAGATTTCCGCAATTTTA 198
BSNT_04009___ 199 GGCGGAATGGCCTATAAACCGAAAGCGTTAGAACCGGTCG-AGTCAGCCC 247
|||||.|||.|.|||||.|||||||||.|.|||.|.||.| |||| ||.|
RBAM_024750__ 199 GGCGGGATGACGTATAAGCCGAAAGCGCTGGAATCTGTGGAAGTC-GCGC 247
BSNT_04009___ 248 TTGATGATTTGATTATAGAGTGGTGTAAAGCAGAGGC---GGGAGCGCCT 294
|||||||..|..|.||.|||||||.||||||.||..| .|.|.||.||
RBAM_024750__ 248 TTGATGACCTCGTCATTGAGTGGTTTAAAGCCGAATCTCATGCACCGGCT 297
BSNT_04009___ 295 GCCATTCATCAG-ACGATTGGTGATTTGAATGTGGGTCAGGAATATCATG 343
| |||.|.| ||.||.||.||||||.| |.|||.|| |.|||
RBAM_024750__ 298 G----TCAGCCGTACAATCGGAGATTTGGA----GATCAAGA--AACAT- 336
BSNT_04009___ 344 T--AACGGTC------ATTGCAATTGTTAAAAAGAATCAGGATAAACAAC 385
| ||| ||| |||||.||.||.||.||.||.|.|.|.|||||.|
RBAM_024750__ 337 TACAAC-GTCCAGATTATTGCGATCGTAAAGAAAAACCGGCAAAAACAGC 385
BSNT_04009___ 386 TGAATCCGAGCTCTGAAACAGTCATTGACGAAGGCGATACACTTGTGATT 435
|||..||..||..|||.||.||.|||||.|||||.||.||.||.||.||.
RBAM_024750__ 386 TGAGCCCCGGCATTGATACCGTAATTGAAGAAGGGGACACCCTCGTCATA 435
BSNT_04009___ 436 TCCGGTGAGGGAACCGGACTGAAGAGGCTGATCCGGGAAAAATTAACAGC 485
||.||.||..|||.|||||||||.|.||||.||||.||..|||||||.||
RBAM_024750__ 436 TCGGGAGAAAGAAGCGGACTGAAAAAGCTGGTCCGCGAGCAATTAACGGC 485
BSNT_04009___ 486 AAAGGGA---GCTTAA 498
..||| .||.|
RBAM_024750__ 486 --CCGGATTTCCTGA- 498
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