Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04007 and RBAM_024730
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:20
# Commandline: needle
# -asequence dna-align/BSNT_04007___yrvE.1.9828.seq
# -bsequence dna-align/RBAM_024730___yrvE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04007___yrvE-RBAM_024730___yrvE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04007___yrvE-RBAM_024730___yrvE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04007___yrvE
# 2: RBAM_024730___yrvE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2384
# Identity: 1113/2384 (46.7%)
# Similarity: 1113/2384 (46.7%)
# Gaps: 1021/2384 (42.8%)
# Score: 4380.0
#
#
#=======================================
BSNT_04007___ 1 ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGATAA 50
||||||||||||||||||||.|||||||||||||..||.||||||||.||
RBAM_024730__ 1 ATGTTAGCGTCAAAAATGCGCTGGGAAATCCAGCAGCCGGATCAGGAAAA 50
BSNT_04007___ 51 GGTCAAATCACTCACAGAACAATTGCATATAACACCTCTTGTTGCGTCCC 100
.||||||||||||||||||||||||.|.||||||||||||||.||.||.|
RBAM_024730__ 51 AGTCAAATCACTCACAGAACAATTGGACATAACACCTCTTGTGGCATCAC 100
BSNT_04007___ 101 TGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAGCGCTAGGCTGTTTTTA 150
||||||||||||||||.||||||||.||.||||||||.||||||||||||
RBAM_024730__ 101 TGCTTGTAAAAAGAGGTTTTGATACTGCCGAAAGCGCAAGGCTGTTTTTA 150
BSNT_04007___ 151 CATACAAAGGATGCCGATTTTTATGATCCTTTTGAAATGAAAGGCATGAA 200
||||||||||||||.||.||||||||.||.|.||||.|.||.||.|||..
RBAM_024730__ 151 CATACAAAGGATGCAGACTTTTATGACCCGTATGAATTAAAGGGAATGCG 200
BSNT_04007___ 201 AGAAGCGGCAGATCGAATAAAACAGGCGATTTCACAACAAGAAAAGATTA 250
.|||||.|..|||||.|||||||.||||.||||.|||...|||..|||||
RBAM_024730__ 201 GGAAGCAGTTGATCGGATAAAACTGGCGGTTTCTCAAGGGGAACCGATTA 250
BSNT_04007___ 251 TGATATATGGCGATTATGACGCCGATGGGGTTACAAGTACGTCAGTAATG 300
||||.||.||.|||||.||.||.||.||.||||||||.||||||||.|||
RBAM_024730__ 251 TGATTTACGGAGATTACGATGCAGACGGCGTTACAAGCACGTCAGTGATG 300
BSNT_04007___ 301 CT--------TCACACGCTGCAAAAACTGTCGGCTCAAGTTGATTTTTAT 342
|| |||.|| |.||||||||..|.|||||.||||||
RBAM_024730__ 301 CTGACGGCACTCAGAC--------AGCTGTCGGCGGACGTTGACTTTTAT 342
BSNT_04007___ 343 ATACCTGACCGTTTTAAAGAAGGATATGGACCTAATGAACAGGCGTTTCG 392
||.||.||||||||.|.||||||.||.||.||.||||||||.||.||.||
RBAM_024730__ 343 ATTCCCGACCGTTTCACAGAAGGCTACGGCCCGAATGAACAAGCTTTCCG 392
BSNT_04007___ 393 TTCGATTAAAGATCGGGGCTTCTCTTTGATCATTACGGTTGATACAGGAA 442
.||.||.|||||.|||||.||.||..||||||||||.||.|||||.||||
RBAM_024730__ 393 CTCCATAAAAGAGCGGGGATTTTCGCTGATCATTACAGTGGATACGGGAA 442
BSNT_04007___ 443 TTGCCGCTGTGCATGAAGC-GAAGGTGGCAAAGGAACTCGGACTGGATGT 491
|.|||||.||.||.||||| ||| ||.|||||.||.||.||..|.||.||
RBAM_024730__ 443 TCGCCGCCGTCCAAGAAGCTGAA-GTCGCAAAAGAGCTGGGCTTAGACGT 491
BSNT_04007___ 492 CATCATTACTGATCATCATGAACCGGGACCGGAGCTTCCGGATGTCCATG 541
|||.|||||.||.||.|||||.||||||||.||||||||.||.||...||
RBAM_024730__ 492 CATTATTACCGACCACCATGAGCCGGGACCCGAGCTTCCTGACGTATTTG 541
BSNT_04007___ 542 CGATCGTCCACCCGAAGCAGCCTGGCTGCACTTACCCGTTTAAAGAGCTT 591
|||||.||||||||||||||||.||||||...||.|||||||||||..|.
RBAM_024730__ 542 CGATCATCCACCCGAAGCAGCCGGGCTGCGGCTATCCGTTTAAAGAATTG 591
BSNT_04007___ 592 GCCGGGGTTGGAGTCGCGTTTAAGCTTGCCCACGC-TTTATTGGGTGAAC 640
|||||.||.||.||.|||||||||||||||||||| .|||..||.| |
RBAM_024730__ 592 GCCGGCGTCGGTGTGGCGTTTAAGCTTGCCCACGCGCTTACGGGTT---C 638
BSNT_04007___ 641 TT--CCTGATGAACTGCTTGACCTGGCGGCTATCGGCACCATTGCCGATC 688
|| ||.||.|...||||.|||.|||||||.|||||.||..||||.||||
RBAM_024730__ 639 TTTGCCGGAAGCTATGCTGGACTTGGCGGCAATCGGTACGGTTGCAGATC 688
BSNT_04007___ 689 TAGTCCCGCTGCATGACGAAAACAGATTAATTGCAACACTAGGACTTGAA 738
|.||.||.||.|||||||||||||||||||||||..||||.|||.|.|||
RBAM_024730__ 689 TGGTGCCTCTTCATGACGAAAACAGATTAATTGCGTCACTCGGAATCGAA 738
BSNT_04007___ 739 AGGCTTC-GACGGACAAATCGGCTCGGCTTAAAAGAGCTGATTAAGCTGT 787
||||||| ||| |||||||||||..|||.|.||||..|||||||||||.|
RBAM_024730__ 739 AGGCTTCGGAC-GACAAATCGGCCGGGCCTCAAAGCCCTGATTAAGCTTT 787
BSNT_04007___ 788 CAGGCGGAGACATCGGAGAAGCGAACGAAGAAACAGTCGGATTTCAGCTC 837
|.||||||||.||||||.||||..|.||.|||||..|||||||||||.||
RBAM_024730__ 788 CCGGCGGAGATATCGGACAAGCTGATGAGGAAACGATCGGATTTCAGGTC 837
BSNT_04007___ 838 GCACCAAGGCTGAATGCCGTCGGAAGAATCGAACAGGCGGATCCCGCTGT 887
||.||||||||.|||||||||||||||||.||||||||.||||||||.||
RBAM_024730__ 838 GCGCCAAGGCTCAATGCCGTCGGAAGAATAGAACAGGCCGATCCCGCCGT 887
BSNT_04007___ 888 TCATTTGCTTATGTCAGAGGATTCGTTTGAAGCGGAAGAGCTTGCCGCAG 937
.|||.||||.|||.|.||.|||..||||||||||||.||.||.||..|.|
RBAM_024730__ 888 CCATCTGCTGATGACCGAAGATCAGTTTGAAGCGGAGGAACTGGCTTCGG 937
BSNT_04007___ 938 AAATTGACCAGCTGAACAAAGAGCGCCAAAAAATGGTCAGCAAA--ATGA 985
|.|||||||.||||||.||||||||.||.|||||||| |.||| ||||
RBAM_024730__ 938 ATATTGACCGGCTGAATAAAGAGCGGCAGAAAATGGT--GAAAACCATGA 985
BSNT_04007___ 986 CGGATGAAGCGATTGAAATGGTTGAACAGCAAGGGCTCGATCAAA----- 1030
|.||.||.||..|||||||||||.|.|||||||| || .|||
RBAM_024730__ 986 CCGAAGAGGCTGTTGAAATGGTTCAGCAGCAAGG---CG--GAAACCCGT 1030
BSNT_04007___ 1031 CTGCAATTGTCGTGGCCAAAGCCGGATGGAACCCGGGAGTCGTCGGGATT 1080
||||.|||||.|||||.||||||||.|||||.||||||||||||||.|||
RBAM_024730__ 1031 CTGCCATTGTAGTGGCAAAAGCCGGCTGGAATCCGGGAGTCGTCGGTATT 1080
BSNT_04007___ 1081 GTGGCTTCAAAGCTTGTGGACCGCTTCTACCGACCGGCCATTGTTCTTGG 1130
||.||.||.|||||.|..||.||.||.|||||.||.||..||||.|||||
RBAM_024730__ 1081 GTCGCATCGAAGCTGGCTGAACGTTTTTACCGGCCCGCTGTTGTGCTTGG 1130
BSNT_04007___ 1131 CATTGATGAAGAAAAGGGAATCGCTAAAGGTTCGGCCCGAAGCATCAGAG 1180
.||.|||||.||..||||||||||||||||.|||||.|||||||||||||
RBAM_024730__ 1131 GATAGATGAGGAGCAGGGAATCGCTAAAGGGTCGGCGCGAAGCATCAGAG 1180
BSNT_04007___ 1181 GCTTTAATTTATTTGAGAGCCTTTCTGAATGCAGAGATATTCTTCCTCAT 1230
||||.||..|.|||..|||||||||..|.||||||||.||||||||||||
RBAM_024730__ 1181 GCTTCAACCTGTTTACGAGCCTTTCACAGTGCAGAGACATTCTTCCTCAT 1230
BSNT_04007___ 1231 TTCGGCGGCCATCCAATGGCTGCGGGGATGACGCTGAAAGCTGAAGATGT 1280
||||||||.|||||.|||||.||.||.||||||.||||.|||||||||||
RBAM_024730__ 1231 TTCGGCGGGCATCCGATGGCGGCAGGAATGACGTTGAAGGCTGAAGATGT 1280
BSNT_04007___ 1281 GCCGGATTTGCGAAG---CAGGCTGAACGAAATAGCGGACAATACGCTTA 1327
|.||||.|| ||| |||||||||..||||.||.||..|.||.||||
RBAM_024730__ 1281 GGCGGAATT---AAGGGACAGGCTGAATCAAATGGCTGAAGAAACCCTTA 1327
BSNT_04007___ 1328 CGGAAGAGGATTTTATTCCCGTACAGGAAGTCGACCTTGTCTGCAGCATC 1377
||||||||||||||||||||||.|||||.|| ||.|||||||||.||.|.
RBAM_024730__ 1328 CGGAAGAGGATTTTATTCCCGTTCAGGAGGT-GATCTTGTCTGCGGCGTT 1376
BSNT_04007___ 1378 GAGGACATTACAGTTGAAAGCATCGCAGAAATGAACATGCTGTCTCCTTT 1427
||.|||||.|
RBAM_024730__ 1377 GAAGACATAA---------------------------------------- 1386
BSNT_04007___ 1428 TGGCATGCTTAACCCGAAACCGCACGTTCTCGTAGAAAACGCAGTACTGG 1477
RBAM_024730__ 1386 -------------------------------------------------- 1386
BSNT_04007___ 1478 AAGATGTCCGCAAGATAGGGGCAAATAAAACTCATGTCAAAATGACGATC 1527
RBAM_024730__ 1386 -------------------------------------------------- 1386
BSNT_04007___ 1528 AGAAACGAGTCGTCCCAGCTTGATTGCGTCGGTTTTAATAAAGGCGAGCT 1577
RBAM_024730__ 1386 -------------------------------------------------- 1386
BSNT_04007___ 1578 TCAAGAAGGCATCGTACCGGGTTCAAGAATTTCCATTGTCGGTGAGATGT 1627
RBAM_024730__ 1386 -------------------------------------------------- 1386
BSNT_04007___ 1628 CAATCAACGAATGGAACAATCGAAAAAAGCCGCAGCTTATGATAAAGGAT 1677
RBAM_024730__ 1386 -------------------------------------------------- 1386
BSNT_04007___ 1678 GCCGCTGTTTCTGAATGGCAGCTGTTTGATTTAAGGGGAAAACGGACGTG 1727
RBAM_024730__ 1386 -------------------------------------------------- 1386
BSNT_04007___ 1728 GGAAGACACAGTTTCCGCCCTTCCATCTGCTAAACGGGCCATTGTCTCTT 1777
RBAM_024730__ 1386 -------------------------------------------------- 1386
BSNT_04007___ 1778 TCAAAGAAGACTCAACAACATTACTTCAAACTGAAGACCTTCGCCGAGAA 1827
RBAM_024730__ 1386 -------------------------------------------------- 1386
BSNT_04007___ 1828 GTGCACGTCATCAGTTCTAAAGATCAAGCAAAGGCGTTTGACCTCGATGG 1877
RBAM_024730__ 1386 -------------------------------------------------- 1386
BSNT_04007___ 1878 TGCATATATTGTATTACTGGATCCGCCGCCTTCGCTGGACATGCTCGCAC 1927
RBAM_024730__ 1386 -------------------------------------------------- 1386
BSNT_04007___ 1928 GTTTACTGGAAGGCAAGGCGCCTGAGCGGATATATTTTATTTTTCTCAAT 1977
RBAM_024730__ 1386 -------------------------------------------------- 1386
BSNT_04007___ 1978 CATGAGGACCACTTTTTATCAACTTTTCCCGCAAGAGACCACTTTAAATG 2027
RBAM_024730__ 1386 -------------------------------------------------- 1386
BSNT_04007___ 2028 GTATTATGCGTTCTTGCTGAAAAGAGGCGCTTTTGACGTGAAAAAACACG 2077
RBAM_024730__ 1386 -------------------------------------------------- 1386
BSNT_04007___ 2078 GTTCAGAGCTTGCAAAACATAAAGGCTGGTCCGTTGAAACAATCAATTTC 2127
RBAM_024730__ 1386 -------------------------------------------------- 1386
BSNT_04007___ 2128 ATGACAAAGGTGTTTTTTGATCTCGGTTTTGTTAAAATAGAGAATGGTGT 2177
RBAM_024730__ 1386 -------------------------------------------------- 1386
BSNT_04007___ 2178 GCTGTCTGTTGTGAGCGGAGCAAAGAAACGCGACTTAACAGACTCACAAA 2227
RBAM_024730__ 1386 -------------------------------------------------- 1386
BSNT_04007___ 2228 CATATCAGGCGAAACAGCAGCTGATGGAACTGGATCAAAAGCTGAATTAT 2277
RBAM_024730__ 1386 -------------------------------------------------- 1386
BSNT_04007___ 2278 TCTTCTGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGAAACAAGA 2327
RBAM_024730__ 1386 -------------------------------------------------- 1386
BSNT_04007___ 2328 TTCAGAGGCTTATGAAAGTACGAGGAGGACATAA 2361
RBAM_024730__ 1386 ---------------------------------- 1386
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