Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04007 and RBAM_024730

See Amino acid alignment / Visit BSNT_04007 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:20
# Commandline: needle
#    -asequence dna-align/BSNT_04007___yrvE.1.9828.seq
#    -bsequence dna-align/RBAM_024730___yrvE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04007___yrvE-RBAM_024730___yrvE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04007___yrvE-RBAM_024730___yrvE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04007___yrvE
# 2: RBAM_024730___yrvE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2384
# Identity:    1113/2384 (46.7%)
# Similarity:  1113/2384 (46.7%)
# Gaps:        1021/2384 (42.8%)
# Score: 4380.0
# 
#
#=======================================

BSNT_04007___      1 ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGATAA     50
                     ||||||||||||||||||||.|||||||||||||..||.||||||||.||
RBAM_024730__      1 ATGTTAGCGTCAAAAATGCGCTGGGAAATCCAGCAGCCGGATCAGGAAAA     50

BSNT_04007___     51 GGTCAAATCACTCACAGAACAATTGCATATAACACCTCTTGTTGCGTCCC    100
                     .||||||||||||||||||||||||.|.||||||||||||||.||.||.|
RBAM_024730__     51 AGTCAAATCACTCACAGAACAATTGGACATAACACCTCTTGTGGCATCAC    100

BSNT_04007___    101 TGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAGCGCTAGGCTGTTTTTA    150
                     ||||||||||||||||.||||||||.||.||||||||.||||||||||||
RBAM_024730__    101 TGCTTGTAAAAAGAGGTTTTGATACTGCCGAAAGCGCAAGGCTGTTTTTA    150

BSNT_04007___    151 CATACAAAGGATGCCGATTTTTATGATCCTTTTGAAATGAAAGGCATGAA    200
                     ||||||||||||||.||.||||||||.||.|.||||.|.||.||.|||..
RBAM_024730__    151 CATACAAAGGATGCAGACTTTTATGACCCGTATGAATTAAAGGGAATGCG    200

BSNT_04007___    201 AGAAGCGGCAGATCGAATAAAACAGGCGATTTCACAACAAGAAAAGATTA    250
                     .|||||.|..|||||.|||||||.||||.||||.|||...|||..|||||
RBAM_024730__    201 GGAAGCAGTTGATCGGATAAAACTGGCGGTTTCTCAAGGGGAACCGATTA    250

BSNT_04007___    251 TGATATATGGCGATTATGACGCCGATGGGGTTACAAGTACGTCAGTAATG    300
                     ||||.||.||.|||||.||.||.||.||.||||||||.||||||||.|||
RBAM_024730__    251 TGATTTACGGAGATTACGATGCAGACGGCGTTACAAGCACGTCAGTGATG    300

BSNT_04007___    301 CT--------TCACACGCTGCAAAAACTGTCGGCTCAAGTTGATTTTTAT    342
                     ||        |||.||        |.||||||||..|.|||||.||||||
RBAM_024730__    301 CTGACGGCACTCAGAC--------AGCTGTCGGCGGACGTTGACTTTTAT    342

BSNT_04007___    343 ATACCTGACCGTTTTAAAGAAGGATATGGACCTAATGAACAGGCGTTTCG    392
                     ||.||.||||||||.|.||||||.||.||.||.||||||||.||.||.||
RBAM_024730__    343 ATTCCCGACCGTTTCACAGAAGGCTACGGCCCGAATGAACAAGCTTTCCG    392

BSNT_04007___    393 TTCGATTAAAGATCGGGGCTTCTCTTTGATCATTACGGTTGATACAGGAA    442
                     .||.||.|||||.|||||.||.||..||||||||||.||.|||||.||||
RBAM_024730__    393 CTCCATAAAAGAGCGGGGATTTTCGCTGATCATTACAGTGGATACGGGAA    442

BSNT_04007___    443 TTGCCGCTGTGCATGAAGC-GAAGGTGGCAAAGGAACTCGGACTGGATGT    491
                     |.|||||.||.||.||||| ||| ||.|||||.||.||.||..|.||.||
RBAM_024730__    443 TCGCCGCCGTCCAAGAAGCTGAA-GTCGCAAAAGAGCTGGGCTTAGACGT    491

BSNT_04007___    492 CATCATTACTGATCATCATGAACCGGGACCGGAGCTTCCGGATGTCCATG    541
                     |||.|||||.||.||.|||||.||||||||.||||||||.||.||...||
RBAM_024730__    492 CATTATTACCGACCACCATGAGCCGGGACCCGAGCTTCCTGACGTATTTG    541

BSNT_04007___    542 CGATCGTCCACCCGAAGCAGCCTGGCTGCACTTACCCGTTTAAAGAGCTT    591
                     |||||.||||||||||||||||.||||||...||.|||||||||||..|.
RBAM_024730__    542 CGATCATCCACCCGAAGCAGCCGGGCTGCGGCTATCCGTTTAAAGAATTG    591

BSNT_04007___    592 GCCGGGGTTGGAGTCGCGTTTAAGCTTGCCCACGC-TTTATTGGGTGAAC    640
                     |||||.||.||.||.|||||||||||||||||||| .|||..||.|   |
RBAM_024730__    592 GCCGGCGTCGGTGTGGCGTTTAAGCTTGCCCACGCGCTTACGGGTT---C    638

BSNT_04007___    641 TT--CCTGATGAACTGCTTGACCTGGCGGCTATCGGCACCATTGCCGATC    688
                     ||  ||.||.|...||||.|||.|||||||.|||||.||..||||.||||
RBAM_024730__    639 TTTGCCGGAAGCTATGCTGGACTTGGCGGCAATCGGTACGGTTGCAGATC    688

BSNT_04007___    689 TAGTCCCGCTGCATGACGAAAACAGATTAATTGCAACACTAGGACTTGAA    738
                     |.||.||.||.|||||||||||||||||||||||..||||.|||.|.|||
RBAM_024730__    689 TGGTGCCTCTTCATGACGAAAACAGATTAATTGCGTCACTCGGAATCGAA    738

BSNT_04007___    739 AGGCTTC-GACGGACAAATCGGCTCGGCTTAAAAGAGCTGATTAAGCTGT    787
                     ||||||| ||| |||||||||||..|||.|.||||..|||||||||||.|
RBAM_024730__    739 AGGCTTCGGAC-GACAAATCGGCCGGGCCTCAAAGCCCTGATTAAGCTTT    787

BSNT_04007___    788 CAGGCGGAGACATCGGAGAAGCGAACGAAGAAACAGTCGGATTTCAGCTC    837
                     |.||||||||.||||||.||||..|.||.|||||..|||||||||||.||
RBAM_024730__    788 CCGGCGGAGATATCGGACAAGCTGATGAGGAAACGATCGGATTTCAGGTC    837

BSNT_04007___    838 GCACCAAGGCTGAATGCCGTCGGAAGAATCGAACAGGCGGATCCCGCTGT    887
                     ||.||||||||.|||||||||||||||||.||||||||.||||||||.||
RBAM_024730__    838 GCGCCAAGGCTCAATGCCGTCGGAAGAATAGAACAGGCCGATCCCGCCGT    887

BSNT_04007___    888 TCATTTGCTTATGTCAGAGGATTCGTTTGAAGCGGAAGAGCTTGCCGCAG    937
                     .|||.||||.|||.|.||.|||..||||||||||||.||.||.||..|.|
RBAM_024730__    888 CCATCTGCTGATGACCGAAGATCAGTTTGAAGCGGAGGAACTGGCTTCGG    937

BSNT_04007___    938 AAATTGACCAGCTGAACAAAGAGCGCCAAAAAATGGTCAGCAAA--ATGA    985
                     |.|||||||.||||||.||||||||.||.||||||||  |.|||  ||||
RBAM_024730__    938 ATATTGACCGGCTGAATAAAGAGCGGCAGAAAATGGT--GAAAACCATGA    985

BSNT_04007___    986 CGGATGAAGCGATTGAAATGGTTGAACAGCAAGGGCTCGATCAAA-----   1030
                     |.||.||.||..|||||||||||.|.||||||||   ||  .|||     
RBAM_024730__    986 CCGAAGAGGCTGTTGAAATGGTTCAGCAGCAAGG---CG--GAAACCCGT   1030

BSNT_04007___   1031 CTGCAATTGTCGTGGCCAAAGCCGGATGGAACCCGGGAGTCGTCGGGATT   1080
                     ||||.|||||.|||||.||||||||.|||||.||||||||||||||.|||
RBAM_024730__   1031 CTGCCATTGTAGTGGCAAAAGCCGGCTGGAATCCGGGAGTCGTCGGTATT   1080

BSNT_04007___   1081 GTGGCTTCAAAGCTTGTGGACCGCTTCTACCGACCGGCCATTGTTCTTGG   1130
                     ||.||.||.|||||.|..||.||.||.|||||.||.||..||||.|||||
RBAM_024730__   1081 GTCGCATCGAAGCTGGCTGAACGTTTTTACCGGCCCGCTGTTGTGCTTGG   1130

BSNT_04007___   1131 CATTGATGAAGAAAAGGGAATCGCTAAAGGTTCGGCCCGAAGCATCAGAG   1180
                     .||.|||||.||..||||||||||||||||.|||||.|||||||||||||
RBAM_024730__   1131 GATAGATGAGGAGCAGGGAATCGCTAAAGGGTCGGCGCGAAGCATCAGAG   1180

BSNT_04007___   1181 GCTTTAATTTATTTGAGAGCCTTTCTGAATGCAGAGATATTCTTCCTCAT   1230
                     ||||.||..|.|||..|||||||||..|.||||||||.||||||||||||
RBAM_024730__   1181 GCTTCAACCTGTTTACGAGCCTTTCACAGTGCAGAGACATTCTTCCTCAT   1230

BSNT_04007___   1231 TTCGGCGGCCATCCAATGGCTGCGGGGATGACGCTGAAAGCTGAAGATGT   1280
                     ||||||||.|||||.|||||.||.||.||||||.||||.|||||||||||
RBAM_024730__   1231 TTCGGCGGGCATCCGATGGCGGCAGGAATGACGTTGAAGGCTGAAGATGT   1280

BSNT_04007___   1281 GCCGGATTTGCGAAG---CAGGCTGAACGAAATAGCGGACAATACGCTTA   1327
                     |.||||.||   |||   |||||||||..||||.||.||..|.||.||||
RBAM_024730__   1281 GGCGGAATT---AAGGGACAGGCTGAATCAAATGGCTGAAGAAACCCTTA   1327

BSNT_04007___   1328 CGGAAGAGGATTTTATTCCCGTACAGGAAGTCGACCTTGTCTGCAGCATC   1377
                     ||||||||||||||||||||||.|||||.|| ||.|||||||||.||.|.
RBAM_024730__   1328 CGGAAGAGGATTTTATTCCCGTTCAGGAGGT-GATCTTGTCTGCGGCGTT   1376

BSNT_04007___   1378 GAGGACATTACAGTTGAAAGCATCGCAGAAATGAACATGCTGTCTCCTTT   1427
                     ||.|||||.|                                        
RBAM_024730__   1377 GAAGACATAA----------------------------------------   1386

BSNT_04007___   1428 TGGCATGCTTAACCCGAAACCGCACGTTCTCGTAGAAAACGCAGTACTGG   1477
                                                                       
RBAM_024730__   1386 --------------------------------------------------   1386

BSNT_04007___   1478 AAGATGTCCGCAAGATAGGGGCAAATAAAACTCATGTCAAAATGACGATC   1527
                                                                       
RBAM_024730__   1386 --------------------------------------------------   1386

BSNT_04007___   1528 AGAAACGAGTCGTCCCAGCTTGATTGCGTCGGTTTTAATAAAGGCGAGCT   1577
                                                                       
RBAM_024730__   1386 --------------------------------------------------   1386

BSNT_04007___   1578 TCAAGAAGGCATCGTACCGGGTTCAAGAATTTCCATTGTCGGTGAGATGT   1627
                                                                       
RBAM_024730__   1386 --------------------------------------------------   1386

BSNT_04007___   1628 CAATCAACGAATGGAACAATCGAAAAAAGCCGCAGCTTATGATAAAGGAT   1677
                                                                       
RBAM_024730__   1386 --------------------------------------------------   1386

BSNT_04007___   1678 GCCGCTGTTTCTGAATGGCAGCTGTTTGATTTAAGGGGAAAACGGACGTG   1727
                                                                       
RBAM_024730__   1386 --------------------------------------------------   1386

BSNT_04007___   1728 GGAAGACACAGTTTCCGCCCTTCCATCTGCTAAACGGGCCATTGTCTCTT   1777
                                                                       
RBAM_024730__   1386 --------------------------------------------------   1386

BSNT_04007___   1778 TCAAAGAAGACTCAACAACATTACTTCAAACTGAAGACCTTCGCCGAGAA   1827
                                                                       
RBAM_024730__   1386 --------------------------------------------------   1386

BSNT_04007___   1828 GTGCACGTCATCAGTTCTAAAGATCAAGCAAAGGCGTTTGACCTCGATGG   1877
                                                                       
RBAM_024730__   1386 --------------------------------------------------   1386

BSNT_04007___   1878 TGCATATATTGTATTACTGGATCCGCCGCCTTCGCTGGACATGCTCGCAC   1927
                                                                       
RBAM_024730__   1386 --------------------------------------------------   1386

BSNT_04007___   1928 GTTTACTGGAAGGCAAGGCGCCTGAGCGGATATATTTTATTTTTCTCAAT   1977
                                                                       
RBAM_024730__   1386 --------------------------------------------------   1386

BSNT_04007___   1978 CATGAGGACCACTTTTTATCAACTTTTCCCGCAAGAGACCACTTTAAATG   2027
                                                                       
RBAM_024730__   1386 --------------------------------------------------   1386

BSNT_04007___   2028 GTATTATGCGTTCTTGCTGAAAAGAGGCGCTTTTGACGTGAAAAAACACG   2077
                                                                       
RBAM_024730__   1386 --------------------------------------------------   1386

BSNT_04007___   2078 GTTCAGAGCTTGCAAAACATAAAGGCTGGTCCGTTGAAACAATCAATTTC   2127
                                                                       
RBAM_024730__   1386 --------------------------------------------------   1386

BSNT_04007___   2128 ATGACAAAGGTGTTTTTTGATCTCGGTTTTGTTAAAATAGAGAATGGTGT   2177
                                                                       
RBAM_024730__   1386 --------------------------------------------------   1386

BSNT_04007___   2178 GCTGTCTGTTGTGAGCGGAGCAAAGAAACGCGACTTAACAGACTCACAAA   2227
                                                                       
RBAM_024730__   1386 --------------------------------------------------   1386

BSNT_04007___   2228 CATATCAGGCGAAACAGCAGCTGATGGAACTGGATCAAAAGCTGAATTAT   2277
                                                                       
RBAM_024730__   1386 --------------------------------------------------   1386

BSNT_04007___   2278 TCTTCTGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGAAACAAGA   2327
                                                                       
RBAM_024730__   1386 --------------------------------------------------   1386

BSNT_04007___   2328 TTCAGAGGCTTATGAAAGTACGAGGAGGACATAA   2361
                                                       
RBAM_024730__   1386 ----------------------------------   1386


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