Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03973 and RBAM_024470
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:16
# Commandline: needle
# -asequence dna-align/BSNT_03973___yrrL.1.9828.seq
# -bsequence dna-align/RBAM_024470___yrrL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03973___yrrL-RBAM_024470___yrrL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03973___yrrL-RBAM_024470___yrrL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03973___yrrL
# 2: RBAM_024470___yrrL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1111
# Identity: 814/1111 (73.3%)
# Similarity: 814/1111 (73.3%)
# Gaps: 47/1111 ( 4.2%)
# Score: 2837.5
#
#
#=======================================
BSNT_03973___ 1 ATGTATATCAATCAGCAAAAAAAATCGTTT----TTTAATAAAAAAAGA- 45
|||.|||||||||||...|||.|.||.||| .|.||.|.|||||.|
RBAM_024470__ 1 ATGAATATCAATCAGACTAAACATTCATTTCCGCGTAAAAACAAAAAAAC 50
BSNT_03973___ 46 ----ATCATACTGTCTTCCATTGTTGTGCTGTTTCTCATCATTGGCGGGG 91
||.||||||||.|||.|..|.|..|||.||.||||||||.||||.|
RBAM_024470__ 51 GACGATAATACTGTCCTCCGTGATCGCTCTGCTTATCATCATTTGCGGTG 100
BSNT_03973___ 92 CATTTTTATATGGGAAATCATTGCTTGAACCTGTTGAAAAAGACAGTAAA 141
|.|||||.|||||||||||..||||....||.|||||.||||.|||.|||
RBAM_024470__ 101 CTTTTTTCTATGGGAAATCTCTGCTGTCTCCGGTTGACAAAGGCAGCAAA 150
BSNT_03973___ 142 ACGACAGTTAATATTAACATTCCGAGCGGTTCGTCTGTTTCAGCCATCGC 191
|||.||||.||||||||.||||||||||||||.||.|||||.||.|||||
RBAM_024470__ 151 ACGGCAGTCAATATTAATATTCCGAGCGGTTCTTCCGTTTCGGCAATCGC 200
BSNT_03973___ 192 ATCGATAT--TAAAGAAAAATGATGTCATAAAAAGCGAGAAGGCGTTTCA 239
.||.|| |..||.|..|..|||||||.||||||.|.||.||.|||||
RBAM_024470__ 201 --TGAAATTCTTGAGGATCAGCATGTCATCAAAAGCAAAAAAGCATTTCA 248
BSNT_03973___ 240 GTACTATGTGAAATATAAAGGTGCTTCCGGGTTTCAGGCCGGATTCTACC 289
|...||||||||.||||||||.|||||||||||||||||.|||||.||||
RBAM_024470__ 249 GCTGTATGTGAAGTATAAAGGCGCTTCCGGGTTTCAGGCGGGATTTTACC 298
BSNT_03973___ 290 ATCTAAATAAAGGTATGGATTTAGATGCCATTATTCAGAAGCTGACAAGT 339
|.||.||||||||.||||||...|||||.|||||..|.||.||||| .|.
RBAM_024470__ 299 ACCTGAATAAAGGAATGGATGCGGATGCGATTATCAAAAAACTGAC-CGC 347
BSNT_03973___ 340 GGG-GCTACAGGTTACGCTTTTCAAATCACAGTGACTGAGGGAGCACAGC 388
||| .|.||.||.||.||.|||||.||..|.||..||||.|||..|||||
RBAM_024470__ 348 GGGATCAACGGGATATGCCTTTCAGATATCCGTTCCTGAAGGAAAACAGC 397
BSNT_03973___ 389 TGACCCAAATCGCGGCTGCTATTGCTGATGAAACAAAATACTCTAAAAAA 438
|.||.||.||.||||..||.||.||..|.|||||...|||.||.|||.||
RBAM_024470__ 398 TTACGCAGATTGCGGAGGCGATCGCAAAAGAAACTTCATATTCAAAAGAA 447
BSNT_03973___ 439 CAAGTCATAGCGAAGCTGGACGATGAAACATTTATC----AATCAGCTGA 484
.|..||||.|||||.|||||.||..|||||||.||| || ||||
RBAM_024470__ 448 GAGATCATGGCGAAACTGGATGACAAAACATTCATCGGCAAA----CTGA 493
BSNT_03973___ 485 AGAAAGAATTCCCGGACACTGTGACAAATGATG---TTTTCAATAAAAAC 531
|||||.|.||.||.||.|| ||.||..||.| |||..||.||.||.
RBAM_024470__ 494 AGAAACAGTTTCCTGATAC---GATAACGGACGCACTTTCAAACAAGAAG 540
BSNT_03973___ 532 ATTAAGCACCCGCTTGAAGGGTACCTATTCCCGGCTACATACCCTTTTAA 581
.|.|||||.|||||.|||||.||.||.|..|||||.|||||.||.|||||
RBAM_024470__ 541 CTCAAGCATCCGCTCGAAGGCTATCTGTATCCGGCCACATATCCGTTTAA 590
BSNT_03973___ 582 CGATCCGGACACATCACTTGAAGAC-ATTATCAAGGCAATGATTAAGCAG 630
.||||||||..||||.|||| |.|| |||.|.|.|||||||.||.||.|.
RBAM_024470__ 591 TGATCCGGATGCATCGCTTG-ACACGATTTTGACGGCAATGGTTCAGGAA 639
BSNT_03973___ 631 ACAAATTCTTATGTGGAAACATATAAATCAGAAATGAAGAAAAACAAAGT 680
|||||..|...|.|.|||||.||||||||.|||.||.|.|||||.|||.|
RBAM_024470__ 640 ACAAACACCCGTATCGAAACGTATAAATCTGAATTGGAAAAAAAGAAACT 689
BSNT_03973___ 681 TTCTGTGCATAA-GCTGCTGACAATGGCTTCTTTGATAGAAGAAGAAGCG 729
|||.||.||||| || ||||||.|||||.||..|.||.|||||||||||.
RBAM_024470__ 690 TTCCGTCCATAACGC-GCTGACGATGGCATCGCTTATTGAAGAAGAAGCC 738
BSNT_03973___ 730 ACTGAAAAAGCCGACCGCCATAAAATTGCGAGCGTCTTTTATAACCGCCT 779
||.|..|||||||||||.||.|||||.||.|||||.|||||.|||.|.||
RBAM_024470__ 739 ACCGCCAAAGCCGACCGTCACAAAATCGCCAGCGTTTTTTACAACAGGCT 788
BSNT_03973___ 780 -GAAAAAGAAAATGCCGCTCCAAACAGATCCGACCGTCCTGTACGCGGCA 828
|||.|| |||||||||||.||.||.||.|||||.||..|.||.|||||.
RBAM_024470__ 789 CGAAGAA-AAAATGCCGCTGCAGACTGACCCGACGGTATTATATGCGGCC 837
BSNT_03973___ 829 GGCAAGCATAAAGATCGGGTTCT-TTATAAGGATCTGGAAATCGATTCAC 877
||.||||||||| |.|.||.||| .||.||.||.|||.||||.|||||.|
RBAM_024470__ 838 GGTAAGCATAAA-AGCCGGGTCTACTACAAAGACCTGAAAATTGATTCTC 886
BSNT_03973___ 878 CATACAATACGTATAAAAACACAGGGCTGACGCCAGGGCCGATTGCCAAT 927
|.|..||||||||||||.|.|..||||||.||||.||.||||||||.|||
RBAM_024470__ 887 CGTTTAATACGTATAAACATAAGGGGCTGCCGCCGGGACCGATTGCAAAT 936
BSNT_03973___ 928 GCCGGCATG--TCGTCATGGGAAGCGGCGCTGCATCCGGATAAAACGGAC 975
||||| || ||.||||||||||||||.||.|..||.||.||||||||.
RBAM_024470__ 937 GCCGG--TGATTCATCATGGGAAGCGGCTCTCCGCCCTGACAAAACGGAT 984
BSNT_03973___ 976 TATCTGTATTTCTTGGCCAAATCAAATGGTGAGGTCGTATTTACAAAAAC 1025
|||||.||||||.|.||.||||||||.||.|||||.||.||.||.|||||
RBAM_024470__ 985 TATCTCTATTTCCTTGCAAAATCAAACGGCGAGGTTGTTTTCACCAAAAC 1034
BSNT_03973___ 1026 GCTAAAAGAGCATAATAAAGCAAAAGAAAAATACATTTCCTCAAAAAATG 1075
..|||||||.|||||||||||.||.|||||.||.|||||| |||||.|
RBAM_024470__ 1035 ATTAAAAGACCATAATAAAGCGAAGGAAAAGTATATTTCC---AAAAAAG 1081
BSNT_03973___ 1076 AGA---AATAA 1083
|.| |||||
RBAM_024470__ 1082 ACAGCGAATAA 1092
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