Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03971 and RBAM_024460
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:16
# Commandline: needle
# -asequence dna-align/BSNT_03971___yrrM.1.9828.seq
# -bsequence dna-align/RBAM_024460___yrrM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03971___yrrM-RBAM_024460___yrrM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03971___yrrM-RBAM_024460___yrrM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03971___yrrM
# 2: RBAM_024460___yrrM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 657
# Identity: 507/657 (77.2%)
# Similarity: 507/657 (77.2%)
# Gaps: 6/657 ( 0.9%)
# Score: 1918.0
#
#
#=======================================
BSNT_03971___ 1 GTGACTGACCGGTATGAACAAATAAATGACTATATAGAAGCATTATTAAA 50
||||.|||.|||||||||||||||||.||.||||||.|.||..|..|.||
RBAM_024460__ 1 GTGAATGATCGGTATGAACAAATAAACGAGTATATAAACGCGATGCTGAA 50
BSNT_03971___ 51 GCCTCGGCCGGATAACGTGAAGAAGCTTGAAGCATATGCAGAAGAACATC 100
|||||||||.|||||.|||||.|||||||||||.||||||.||||.||.|
RBAM_024460__ 51 GCCTCGGCCTGATAAAGTGAAAAAGCTTGAAGCCTATGCAAAAGAGCACC 100
BSNT_03971___ 101 ATGTCCCGATTATGGAAAAAGCGGGCATGGAGGTGCTGCTTCAAATTTTG 150
||||.||||||||||||.||||||||||.||.||||||||||||||..||
RBAM_024460__ 101 ATGTTCCGATTATGGAAGAAGCGGGCATTGAAGTGCTGCTTCAAATGCTG 150
BSNT_03971___ 151 TCTGTGAAACAGCCGAAAAAAATACTAGAAATCGGAACGGCCATTGGTTA 200
||..|..|||||.|||||||.||..|.||||||||..||||.||.||.||
RBAM_024460__ 151 TCGATTCAACAGGCGAAAAACATTTTGGAAATCGGCGCGGCAATCGGATA 200
BSNT_03971___ 201 TTCAGCCATTCGGATGGCGCTGGAGCTGCCGTCTGCTGAAATATATACA- 249
|||.|||||.|||||||||||.|||||.|||..||| .|||||.||||
RBAM_024460__ 201 TTCCGCCATACGGATGGCGCTTGAGCTTCCGGATGC--GAATATTTACAC 248
BSNT_03971___ 250 -ATTGAACGCAATGAGAAACGGCATGAAGAAGCGGTAAACAATATCAAGG 298
||||||||..|.||.|||||..||||||||||.||.||||||||.||.|
RBAM_024460__ 249 GATTGAACGGGACGACAAACGCTATGAAGAAGCTGTGAACAATATAAAAG 298
BSNT_03971___ 299 AATTTCAGCTTGATGACCGGATTCATGTTTTTTACGGAGATGCGCTTGAA 348
|.|||.|..|.||..|||||||||..||..|..||||.||||||||.|||
RBAM_024460__ 299 ACTTTGAAATGGAAAACCGGATTCGCGTAATGCACGGGGATGCGCTGGAA 348
BSNT_03971___ 349 TTAGCCGACGCCGTTCATGTAACCGCGCCTTACGATGTCATTTTTATTGA 398
.|..|.||..|.||.|.|||.||.||.|||||.||||.|||||||||.||
RBAM_024460__ 349 CTTTCTGAGTCTGTCCGTGTCACGGCTCCTTATGATGCCATTTTTATCGA 398
BSNT_03971___ 399 CGCTGCAAAAGGTCAGTATCA-AAACTTTTTTCATTTATATGAACCGATG 447
|||.||.|||||.||||| || .|||||||||.|..|.||||||||||||
RBAM_024460__ 399 CGCGGCCAAAGGCCAGTA-CACGAACTTTTTTGAGCTCTATGAACCGATG 447
BSNT_03971___ 448 CTTTCACCGGACGGGGTGATTATAACAGACAACGTGCTGTTTAAAGGTCT 497
|||.|.|||||.||.||.|||.|.||.|||||.||.|||||||||||.||
RBAM_024460__ 448 CTTGCGCCGGATGGAGTCATTTTTACGGACAATGTTCTGTTTAAAGGGCT 497
BSNT_03971___ 498 GGTGGCAGAGGATTACAGCAAAATAGAACCGAAGAGAAGGCGCAGGCTTG 547
|||||||.|..||.||....|.||.||.|||||.|||||.||.|.|||||
RBAM_024460__ 498 GGTGGCACAAAATCACTCGGACATTGAGCCGAAAAGAAGACGGAAGCTTG 547
BSNT_03971___ 548 TAGCAAAAATTGATGAATATAATCATTGGCTGATGAATCATCCGGATTAT 597
|.|.||||||||||.|||||||.||.|||||||||.|.|..||.||.|||
RBAM_024460__ 548 TTGAAAAAATTGATCAATATAACCAATGGCTGATGGACCGGCCTGACTAT 597
BSNT_03971___ 598 CAAACTGCGATTATTCCTGTCGGGGACGGACTTGCGATTAGTAAAAAGAA 647
|||||.|..||..|.||.|||||.|||||..|.||.||.|||||||||||
RBAM_024460__ 598 CAAACGGTCATACTGCCGGTCGGAGACGGCATCGCCATCAGTAAAAAGAA 647
BSNT_03971___ 648 GAGGTGA 654
|||||||
RBAM_024460__ 648 GAGGTGA 654
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