Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03971 and RBAM_024460

See Amino acid alignment / Visit BSNT_03971 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:16
# Commandline: needle
#    -asequence dna-align/BSNT_03971___yrrM.1.9828.seq
#    -bsequence dna-align/RBAM_024460___yrrM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03971___yrrM-RBAM_024460___yrrM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03971___yrrM-RBAM_024460___yrrM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03971___yrrM
# 2: RBAM_024460___yrrM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 657
# Identity:     507/657 (77.2%)
# Similarity:   507/657 (77.2%)
# Gaps:           6/657 ( 0.9%)
# Score: 1918.0
# 
#
#=======================================

BSNT_03971___      1 GTGACTGACCGGTATGAACAAATAAATGACTATATAGAAGCATTATTAAA     50
                     ||||.|||.|||||||||||||||||.||.||||||.|.||..|..|.||
RBAM_024460__      1 GTGAATGATCGGTATGAACAAATAAACGAGTATATAAACGCGATGCTGAA     50

BSNT_03971___     51 GCCTCGGCCGGATAACGTGAAGAAGCTTGAAGCATATGCAGAAGAACATC    100
                     |||||||||.|||||.|||||.|||||||||||.||||||.||||.||.|
RBAM_024460__     51 GCCTCGGCCTGATAAAGTGAAAAAGCTTGAAGCCTATGCAAAAGAGCACC    100

BSNT_03971___    101 ATGTCCCGATTATGGAAAAAGCGGGCATGGAGGTGCTGCTTCAAATTTTG    150
                     ||||.||||||||||||.||||||||||.||.||||||||||||||..||
RBAM_024460__    101 ATGTTCCGATTATGGAAGAAGCGGGCATTGAAGTGCTGCTTCAAATGCTG    150

BSNT_03971___    151 TCTGTGAAACAGCCGAAAAAAATACTAGAAATCGGAACGGCCATTGGTTA    200
                     ||..|..|||||.|||||||.||..|.||||||||..||||.||.||.||
RBAM_024460__    151 TCGATTCAACAGGCGAAAAACATTTTGGAAATCGGCGCGGCAATCGGATA    200

BSNT_03971___    201 TTCAGCCATTCGGATGGCGCTGGAGCTGCCGTCTGCTGAAATATATACA-    249
                     |||.|||||.|||||||||||.|||||.|||..|||  .|||||.|||| 
RBAM_024460__    201 TTCCGCCATACGGATGGCGCTTGAGCTTCCGGATGC--GAATATTTACAC    248

BSNT_03971___    250 -ATTGAACGCAATGAGAAACGGCATGAAGAAGCGGTAAACAATATCAAGG    298
                      ||||||||..|.||.|||||..||||||||||.||.||||||||.||.|
RBAM_024460__    249 GATTGAACGGGACGACAAACGCTATGAAGAAGCTGTGAACAATATAAAAG    298

BSNT_03971___    299 AATTTCAGCTTGATGACCGGATTCATGTTTTTTACGGAGATGCGCTTGAA    348
                     |.|||.|..|.||..|||||||||..||..|..||||.||||||||.|||
RBAM_024460__    299 ACTTTGAAATGGAAAACCGGATTCGCGTAATGCACGGGGATGCGCTGGAA    348

BSNT_03971___    349 TTAGCCGACGCCGTTCATGTAACCGCGCCTTACGATGTCATTTTTATTGA    398
                     .|..|.||..|.||.|.|||.||.||.|||||.||||.|||||||||.||
RBAM_024460__    349 CTTTCTGAGTCTGTCCGTGTCACGGCTCCTTATGATGCCATTTTTATCGA    398

BSNT_03971___    399 CGCTGCAAAAGGTCAGTATCA-AAACTTTTTTCATTTATATGAACCGATG    447
                     |||.||.|||||.||||| || .|||||||||.|..|.||||||||||||
RBAM_024460__    399 CGCGGCCAAAGGCCAGTA-CACGAACTTTTTTGAGCTCTATGAACCGATG    447

BSNT_03971___    448 CTTTCACCGGACGGGGTGATTATAACAGACAACGTGCTGTTTAAAGGTCT    497
                     |||.|.|||||.||.||.|||.|.||.|||||.||.|||||||||||.||
RBAM_024460__    448 CTTGCGCCGGATGGAGTCATTTTTACGGACAATGTTCTGTTTAAAGGGCT    497

BSNT_03971___    498 GGTGGCAGAGGATTACAGCAAAATAGAACCGAAGAGAAGGCGCAGGCTTG    547
                     |||||||.|..||.||....|.||.||.|||||.|||||.||.|.|||||
RBAM_024460__    498 GGTGGCACAAAATCACTCGGACATTGAGCCGAAAAGAAGACGGAAGCTTG    547

BSNT_03971___    548 TAGCAAAAATTGATGAATATAATCATTGGCTGATGAATCATCCGGATTAT    597
                     |.|.||||||||||.|||||||.||.|||||||||.|.|..||.||.|||
RBAM_024460__    548 TTGAAAAAATTGATCAATATAACCAATGGCTGATGGACCGGCCTGACTAT    597

BSNT_03971___    598 CAAACTGCGATTATTCCTGTCGGGGACGGACTTGCGATTAGTAAAAAGAA    647
                     |||||.|..||..|.||.|||||.|||||..|.||.||.|||||||||||
RBAM_024460__    598 CAAACGGTCATACTGCCGGTCGGAGACGGCATCGCCATCAGTAAAAAGAA    647

BSNT_03971___    648 GAGGTGA    654
                     |||||||
RBAM_024460__    648 GAGGTGA    654


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