Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03966 and RBAM_024420

See Amino acid alignment / Visit BSNT_03966 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:15
# Commandline: needle
#    -asequence dna-align/BSNT_03966___greA.1.9828.seq
#    -bsequence dna-align/RBAM_024420___greA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03966___greA-RBAM_024420___greA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03966___greA-RBAM_024420___greA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03966___greA
# 2: RBAM_024420___greA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 475
# Identity:     409/475 (86.1%)
# Similarity:   409/475 (86.1%)
# Gaps:           2/475 ( 0.4%)
# Score: 1769.0
# 
#
#=======================================

BSNT_03966___      1 ATGGCACAAGAGAAAGTTTTTCCTATGACTGCA-GAAGGAAAACAAAAAC     49
                     |||||||||||.|||||||||||.|||||| || ||||||||||||||||
RBAM_024420__      1 ATGGCACAAGAAAAAGTTTTTCCGATGACT-CACGAAGGAAAACAAAAAC     49

BSNT_03966___     50 TTGAACAAGAATTAGAATATTTGAAAACGGTTAAACGAAAAGAAGTAGTA     99
                     |.||||||||||||||..|.|||||||||||||||||.||||||||||||
RBAM_024420__     50 TAGAACAAGAATTAGAGCAATTGAAAACGGTTAAACGTAAAGAAGTAGTA     99

BSNT_03966___    100 GAGCGAATCAAAATTGCGAGAAGCTTCGGAGACCTTTCCGAGAACTCTGA    149
                     ||.||.||.|||||.||.||||||||||||||.||.||.|||||||||||
RBAM_024420__    100 GAACGCATTAAAATCGCAAGAAGCTTCGGAGATCTGTCAGAGAACTCTGA    149

BSNT_03966___    150 ATACGATTCAGCGAAAGAAGAGCAGGCATTTGTAGAGGGCCGCGTGACGA    199
                     .||.|||||.||.||||||||.|||||||||||.||.||.|||.|.||||
RBAM_024420__    150 GTATGATTCTGCAAAAGAAGAACAGGCATTTGTGGAAGGGCGCATCACGA    199

BSNT_03966___    200 CTCTTGAAAATATGATTCGCAATGCGAAAATCATTGAAGATGACGGCGGC    249
                     |.||||||||.|||||.|||||||||||||||||.||.||.||||||||.
RBAM_024420__    200 CGCTTGAAAACATGATCCGCAATGCGAAAATCATCGAGGACGACGGCGGT    249

BSNT_03966___    250 TCTAACGTTGTCGGTTTGGGTAAAACCGTCACTTTCGTCGAACTGCCTGA    299
                     ||.||.||.|||||||||||.||||||||..|.|||.|||||.||||.||
RBAM_024420__    250 TCAAATGTAGTCGGTTTGGGAAAAACCGTATCATTCATCGAATTGCCGGA    299

BSNT_03966___    300 CGGTGATGAAGAATCATATACGATCGTCGGAAGCGCGGAAGCTGACCCGT    349
                     ||||||.||||||||.||.|||||.|||||||||||.||||||||.||||
RBAM_024420__    300 CGGTGAAGAAGAATCTTACACGATTGTCGGAAGCGCTGAAGCTGATCCGT    349

BSNT_03966___    350 TTGAAGGGAAAATCTCAAACGATTCACCGATCGCAAAAAGCCTCTTGGGC    399
                     |||||||||||||.||||||||.||.||.|||||.||||||||..|.|||
RBAM_024420__    350 TTGAAGGGAAAATTTCAAACGACTCGCCAATCGCCAAAAGCCTGCTCGGC    399

BSNT_03966___    400 AAAAAAGTAGATGAAGAAGTCACAGTACAAACACCGGGCGGAGAAATGCT    449
                     |.||||||.||.||||||||.|||||.||.||.|||||||||||||||||
RBAM_024420__    400 AGAAAAGTGGACGAAGAAGTGACAGTTCAGACGCCGGGCGGAGAAATGCT    449

BSNT_03966___    450 TGTGAAAATTGTGAAAATTTCATAA    474
                     .||||||||||||||||||||||||
RBAM_024420__    450 CGTGAAAATTGTGAAAATTTCATAA    474


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.