Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03958 and RBAM_024360

See Amino acid alignment / Visit BSNT_03958 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:14
# Commandline: needle
#    -asequence dna-align/BSNT_03958___yrhA.1.9828.seq
#    -bsequence dna-align/RBAM_024360___yrhA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03958___yrhA-RBAM_024360___yrhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03958___yrhA-RBAM_024360___yrhA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03958___yrhA
# 2: RBAM_024360___yrhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 934
# Identity:     711/934 (76.1%)
# Similarity:   711/934 (76.1%)
# Gaps:          26/934 ( 2.8%)
# Score: 2682.0
# 
#
#=======================================

BSNT_03958___      1 ATGACAGTGATTACGGACATTACCGAGCTGATTGGGAATACACCGCTTCT     50
                           |||||.||.||.|||||.||.|||||.||.|||||||||||.||
RBAM_024360__      1 ------GTGATAACAGATATTACAGAACTGATCGGAAATACACCGCTGCT     44

BSNT_03958___     51 CCGCTTGAAGAACTTTGATGTTCCAGAAGGAGTCGCGGTGTATGCCAAGC    100
                     |||..|.|||.|.||||||.|.||.||.|||...|||||.|||||.||||
RBAM_024360__     45 CCGTCTCAAGCATTTTGATATACCGGAGGGAACAGCGGTTTATGCTAAGC     94

BSNT_03958___    101 TTGAAATGATGAATCCAGGGGGAAGCATCAAAGACAGACTGGGAGATATG    150
                     ||||.|||||||||||.||.||||||||.||||||||.|||||.|..|||
RBAM_024360__     95 TTGAGATGATGAATCCGGGCGGAAGCATTAAAGACAGGCTGGGCGGGATG    144

BSNT_03958___    151 CTGATTCGTGACGCGC-TCGATTCA--GGCAAGGTAAAACCTGGCGGAGT    197
                     ||.|||...||.|||| |||   ||  ||.|||||.|||||.|||||.||
RBAM_024360__    145 CTCATTGAAGATGCGCTTCG---CACGGGAAAGGTGAAACCGGGCGGCGT    191

BSNT_03958___    198 GATTATAGAAGCTACGGCAGGCAATACAGGGATCGGCCTTGCGCTGAGTG    247
                     .||.||.||.||.||.||.||.||.||.||||||||.||.||.|||.|.|
RBAM_024360__    192 TATCATTGAGGCGACTGCCGGAAACACCGGGATCGGACTCGCTCTGTGCG    241

BSNT_03958___    248 CCAGAAAATATGGGCTGAAAGCGATTTTCTGTGTCCCTGAACATTTCAGC    297
                     |||||||..||..|||....||..||||.||.|||||.||.|||||||||
RBAM_024360__    242 CCAGAAAGCATCAGCTTCGCGCCGTTTTTTGCGTCCCGGAGCATTTCAGC    291

BSNT_03958___    298 AGAGAGAAACAGCAAATTATGCAAGCGCTTGGCGCATCAATCATTCATAC    347
                     |||||.||.||||||||||||.||||.||.||.||....|||.|.|||||
RBAM_024360__    292 AGAGAAAAGCAGCAAATTATGAAAGCTCTCGGAGCGGACATCGTGCATAC    341

BSNT_03958___    348 ACCGCGTCAAGACGGAATGCAGGGCGCCATTCAAAAAGCCATTCAGCTGG    397
                     .|||.|..||||.||.||||||||.|||||.|.||||||..||.|.||||
RBAM_024360__    342 GCCGAGAGAAGAAGGCATGCAGGGAGCCATCCGAAAAGCGCTTGAACTGG    391

BSNT_03958___    398 AGTCTGAAATTGAAAATTCTTATTGCGTTTTGCAATTTAAAAACCGAGTA    447
                     ||...||.|||.|.|||||||||..||||.||||||||||||||||||||
RBAM_024360__    392 AGAGAGAGATTAATAATTCTTATGCCGTTCTGCAATTTAAAAACCGAGTA    441

BSNT_03958___    448 AATCCATCGACTTACTATAAGACGCTTGGGCCTGAAATGTGGGAAGCGCT    497
                     |||||||.||||||||||||.|||.|.|||||.|||||.|||.|.|||||
RBAM_024360__    442 AATCCATTGACTTACTATAAAACGATCGGGCCCGAAATATGGAACGCGCT    491

BSNT_03958___    498 TGATGGGAATATTCATACATTTGTCGCAGGGGCAGGATCAGGGGGCACGT    547
                     .|..|||.||||.|||.|.||||||||||||||.||.||.||.|||||.|
RBAM_024360__    492 CGGCGGGGATATCCATGCTTTTGTCGCAGGGGCGGGTTCCGGCGGCACCT    541

BSNT_03958___    548 TCGCAGGAACAGCTTCCTTCTTAAAAGAAAAAAATCCAGCAGTCAAAACG    597
                     |.||.||.||.||..|.|..|||||.||.||||||||.||.|||||||||
RBAM_024360__    542 TTGCCGGTACGGCAGCTTATTTAAAGGAGAAAAATCCTGCCGTCAAAACG    591

BSNT_03958___    598 GTGATTGTTGAACCGGAGGGCTCGATTTTAAACGGAGGAGAGCCTCACGC    647
                     |||||.|||||||||||.||||||||..|.||.|||||||||||.||.||
RBAM_024360__    592 GTGATCGTTGAACCGGAAGGCTCGATCCTGAATGGAGGAGAGCCGCATGC    641

BSNT_03958___    648 TCATAAAACAGAGGGCATCGGAATGGAGTTTATCCCCGATTATATGAATA    697
                     .||||||||.||.||||||||.||||||||||||||.|||||||||.|..
RBAM_024360__    642 CCATAAAACGGAAGGCATCGGCATGGAGTTTATCCCGGATTATATGGACG    691

BSNT_03958___    698 AGAGCCACTTTGATAAGATCTACACCGTAACGGATGAGAAT---GCGTTT    744
                     |||.|||.|||||....||.|||||.||   |||.||..||   ||||||
RBAM_024360__    692 AGAACCATTTTGACGCCATTTACACGGT---GGAAGACGATACGGCGTTT    738

BSNT_03958___    745 AGACTTGTGAAAGAAGCGGCAGAAAAAGAAGGCCTGCTGATCGGAAGCTC    794
                     ...|||||.|.|||||||||.||.|||||||||||..|.|||||||||||
RBAM_024360__    739 TCGCTTGTCAGAGAAGCGGCCGAGAAAGAAGGCCTCTTAATCGGAAGCTC    788

BSNT_03958___    795 TTCAGGTGCAGCGCTTTATGCAGCATTGGAGGAAGCGAAAAAAGCATCGG    844
                     ||||||.||.||.|||||||||||..|.||.||||||||||||||..|.|
RBAM_024360__    789 TTCAGGGGCGGCTCTTTATGCAGCGCTTGAAGAAGCGAAAAAAGCGCCCG    838

BSNT_03958___    845 CGGGAACTAACATTGTCACAGTATTT--CCTGACAGCAGCGATCGATATA    892
                     |.|||.|.||.||.|||||  |||||  ||||||.|||||||||||||||
RBAM_024360__    839 CCGGATCAAATATCGTCAC--TATTTTCCCTGACGGCAGCGATCGATATA    886

BSNT_03958___    893 TCAGCAAACAAATATACGAAGGAGGCATCTGA--    924
                     |.||||||.|.||.|...|||||||  ||.|.  
RBAM_024360__    887 TAAGCAAAAACATTTTTCAAGGAGG--TCAGTAA    918


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03958 and RBAM_024360

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
