Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03951 and RBAM_024330
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:14
# Commandline: needle
# -asequence dna-align/BSNT_03951___yrhD.1.9828.seq
# -bsequence dna-align/RBAM_024330___yrhD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03951___yrhD-RBAM_024330___yrhD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03951___yrhD-RBAM_024330___yrhD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03951___yrhD
# 2: RBAM_024330___yrhD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 507
# Identity: 373/507 (73.6%)
# Similarity: 373/507 (73.6%)
# Gaps: 39/507 ( 7.7%)
# Score: 1313.5
#
#
#=======================================
BSNT_03951___ 1 ATGGCCACTCCGATTAC-GACGATCAAAAAAGAAACAAAAACAGCTG--- 46
|||||.|..||.||||| || .||..||||||||||.|||||||..|
RBAM_024330__ 1 ATGGCAAGCCCAATTACTGA-AATTCAAAAAGAAACGAAAACAGAGGAAC 49
BSNT_03951___ 47 AGCAAATTAAGCTTGAAAAAATAGAAGAACTGAAAGA-GCTGCTGGCGGA 95
|||.|| |||| |||||||.|.||||||||| |||| |||.||.||.||
RBAM_024330__ 50 AGCTAA--AAGC-TGAAAAACTGGAAGAACTG-AAGACGCTTCTCGCAGA 95
BSNT_03951___ 96 AAATGAGGACGCCGTCTCTAAAACGATGACGTTAATGAATGAACTCAATG 145
||||||.||.||||||.|.|||||||||.|..|.|||...||.||.||||
RBAM_024330__ 96 AAATGAAGAAGCCGTCGCGAAAACGATGTCCATCATGGCAGAGCTGAATG 145
BSNT_03951___ 146 ATCTT-GGAATTTTTGATG----CGGCAACAAGCATGCT-CAGAGCGAAG 189
.||| ||.|||||||||| ||||.| .||||| ||| ||.||.
RBAM_024330__ 146 -GCTTGGGCATTTTTGATGCCGCCGGCTA----TATGCTCCAG-GCAAAA 189
BSNT_03951___ 190 GAAGACATTGCCAAGATTGCGCTTGGCCAAGTTTCCCGCGAGCCTGTCAC 239
||.||.||||||||.||.||.||.||.||..|||||||.||.||||||||
RBAM_024330__ 190 GAGGAGATTGCCAAAATCGCACTCGGACAGATTTCCCGGGAACCTGTCAC 239
BSNT_03951___ 240 CAACCTCATCAACACGATGATGGCCGCCGGAGGCGCATTGACAAAAGCCG 289
|||.|||.|.||.||||||||||||||.||||||||..||.|||||||.|
RBAM_024330__ 240 CAATCTCCTGAATACGATGATGGCCGCGGGAGGCGCGCTGTCAAAAGCTG 289
BSNT_03951___ 290 ATCCTGAGTTTA----CAGCAAAGCTTTTAGAAAGCGTAATGGCTGGGAC 335
||||.||.|||| ||| .|||||||||||||..|||||.|||||
RBAM_024330__ 290 ATCCCGAATTTATGGGCAG----ACTTTTAGAAAGCGCCATGGCCGGGAC 335
BSNT_03951___ 336 TGAACAGGCACAAAGCTTTTTAAAAGAAGACAAGAAAGTCGGGGTTCTCG 385
.||.|||||.|||||.|||||||||||.||||.|||||||.|..|..|.|
RBAM_024330__ 336 GGATCAGGCGCAAAGATTTTTAAAAGAGGACAGGAAAGTCAGTATGTTTG 385
BSNT_03951___ 386 ACCTGTTAAAAGCAATGAACGACCCTGACATCAACAGAGCCGTCGGCTTC 435
|.|||.|.|||||..|....||.|||||.||.|||.|.||..||||||||
RBAM_024330__ 386 AACTGATGAAAGCCGTCGGTGATCCTGATATTAACCGCGCGCTCGGCTTC 435
BSNT_03951___ 436 GGCCTTCAGTTTTTAAAAGGCATGGGAAAAGAACTTCGAGAAA------- 478
||.||.||||||||||||||.||||||||||||.|.||.||||
RBAM_024330__ 436 GGGCTGCAGTTTTTAAAAGGAATGGGAAAAGAATTACGCGAAACCCCGTC 485
BSNT_03951___ 479 --AATAA 483
|||||
RBAM_024330__ 486 TGAATAA 492
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