Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03950 and RBAM_024320
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:14
# Commandline: needle
# -asequence dna-align/BSNT_03950___yrhE.1.9828.seq
# -bsequence dna-align/RBAM_024320___yrhE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03950___yrhE-RBAM_024320___yrhE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03950___yrhE-RBAM_024320___yrhE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03950___yrhE
# 2: RBAM_024320___yrhE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2997
# Identity: 2404/2997 (80.2%)
# Similarity: 2404/2997 (80.2%)
# Gaps: 57/2997 ( 1.9%)
# Score: 9747.5
#
#
#=======================================
BSNT_03950___ 1 ----------------------------AT------GAAT-----ATGAT 11
|| |||| .|||.
RBAM_024320__ 1 GTGCATGGCTTTTTTTCGAGTTTAAAAGATGGAGGGGAATTGGAAGTGAC 50
BSNT_03950___ 12 GGACGGTAAGTCGATCAGTGTCCGTGTAGACGGAACAGAAATTCAAGCAC 61
.||||.|.||||.|||.|||||....|.|||||.||.||...|.||||||
RBAM_024320__ 51 AGACGTTCAGTCTATCCGTGTCAAAATTGACGGCACGGAGTATGAAGCAC 100
BSNT_03950___ 62 GAGCAGGGG-CCACAATATTAGATATTTTAAATGAAAACGGAATTGAGTA 110
.|| ||||| |.|..||.||||||||||||||..||||||||||||||..
RBAM_024320__ 101 CAG-AGGGGTCTAAGATTTTAGATATTTTAAACCAAAACGGAATTGAGAT 149
BSNT_03950___ 111 CCCGCAGATTTGCCACGTACCAGAGGTTGACCCGATTCAAACTTGTGATA 160
.|||||.||.|||||.|||||.||.||.||.|||||||||||.|||||.|
RBAM_024320__ 150 TCCGCAAATATGCCATGTACCGGAAGTGGATCCGATTCAAACATGTGACA 199
BSNT_03950___ 161 CTTGCATAGTAGAGGCAAACGGCAAGCTGGTTCGTTCATGCGCGACGGTT 210
|.||.||.||.||.|.||||||.||..||...||.||.||..|.||||.|
RBAM_024320__ 200 CCTGTATTGTTGAAGTAAACGGGAAATTGCAGCGCTCTTGTTCCACGGCT 249
BSNT_03950___ 211 GCAGAAAACGGGATGTCTATTGATC---TA--TCAGGAAATCGAGTGAAA 255
|||||||||||||||||.|| .|| || ||.|||| |.||.|||
RBAM_024320__ 250 GCAGAAAACGGGATGTCCAT--CTCGCTTACGTCGGGAA---GGGTAAAA 294
BSNT_03950___ 256 GAAGCGCAAACCGAAGCGATGGACCGCCTTCTTGAAAATCATTTGCTGTA 305
||.||.||.||.||.||.|||||||||||.||.||.|||||..||||.||
RBAM_024320__ 295 GAGGCTCAGACAGAGGCCATGGACCGCCTGCTCGAGAATCACCTGCTTTA 344
BSNT_03950___ 306 TTGTACAGTTTGCGATAACAACAATGGAAACTGTACGCTGCATAATACAG 355
.|||||.||.||||||||||||||.||.||.||.||.|||||||||||||
RBAM_024320__ 345 CTGTACGGTATGCGATAACAACAACGGCAATTGCACACTGCATAATACAG 394
BSNT_03950___ 356 CGGAAATGATGGGGATCGAGCATCAAAAATACCCATACACGCCAAAAGAA 405
|||||||||||||.||.||||||||.|||||.||.||.|||||.|||||.
RBAM_024320__ 395 CGGAAATGATGGGAATTGAGCATCAGAAATATCCGTATACGCCGAAAGAT 444
BSNT_03950___ 406 GATCCTTCTTGCGCAGTTGATATGTCTCATCCTTTTTACCGCTATGATCC 455
|||.|....|||||.||||||||||||||.||.|||||||||||||||||
RBAM_024320__ 445 GATTCAAAGTGCGCGGTTGATATGTCTCACCCGTTTTACCGCTATGATCC 494
BSNT_03950___ 456 AAACCAATGTATTGCCTGCGGCCAGTGTGTTGAGGTCTGTCAAAACCTTC 505
.||||||||.||.|||||||||||.|||||.||.||.|||||||||||||
RBAM_024320__ 495 GAACCAATGCATCGCCTGCGGCCAATGTGTGGAAGTGTGTCAAAACCTTC 544
BSNT_03950___ 506 AGGTAAATGAAACACTCTCAATCGACTGGGAACGCGAACGCCCTCGCGTC 555
||||.|||||.||.||.||.||.||.|||||.|||||.|||||.||.|||
RBAM_024320__ 545 AGGTGAATGAGACCCTTTCGATTGATTGGGAGCGCGACCGCCCGCGGGTC 594
BSNT_03950___ 556 ATTTGGGATGAGGGAGTTCCGATCAATGAATCTTCCTGTGTCAGCTGCGG 605
|||||||||||.||.||..|.||.||||||||||||||.|||||||||||
RBAM_024320__ 595 ATTTGGGATGAAGGCGTCGCCATTAATGAATCTTCCTGCGTCAGCTGCGG 644
BSNT_03950___ 606 TCAGTGTGTCACAGTATGTCCATGTAATGCACTGATGGAAAAATCAATGC 655
.|||||||||||.||.|||||.|||||.||||||||||||||||||||||
RBAM_024320__ 645 CCAGTGTGTCACTGTCTGTCCTTGTAACGCACTGATGGAAAAATCAATGC 694
BSNT_03950___ 656 TCGGGCAGGCTGGCTTTATGACAGGGATTAAAGAGGACGTCATGGAACCG 705
||||.||.||.||.|||||||||||.||.|||||.||.||||||||||||
RBAM_024320__ 695 TCGGCCAAGCCGGATTTATGACAGGAATAAAAGAAGATGTCATGGAACCG 744
BSNT_03950___ 706 ATGATTGACCTCGTGAAAAATGTTGAACCGGGGTATGGCAGCATTTTTGC 755
||||||||..|.|||||||||||||||||.|..|||...|||||.||.||
RBAM_024320__ 745 ATGATTGATTTAGTGAAAAATGTTGAACCCGACTATACAAGCATCTTCGC 794
BSNT_03950___ 756 CATTTCTGAAGTCGAAGCGGCAATGCGTG--AAACGAGAACGAAAAAAAC 803
|.|.||||||||.||||||||.|||||.| |||| |.|||||||||||
RBAM_024320__ 795 CGTGTCTGAAGTGGAAGCGGCTATGCGCGATAAAC--GGACGAAAAAAAC 842
BSNT_03950___ 804 GAAAACTGTATGTACGTTCTGCGGTGTCGGGTGTTCATTTGAAGTATGGA 853
||||||.||.||.|||||||||||.|||||.||.||.|||||||||||||
RBAM_024320__ 843 GAAAACAGTCTGCACGTTCTGCGGCGTCGGATGCTCTTTTGAAGTATGGA 892
BSNT_03950___ 854 CAAAAGGACGGGATAT-TTTAAAGATCCAGCCTGTTTCTGATGCTCCGGT 902
||||||||||.||.|| .||||| ||.|||||||||||.|||||||||||
RBAM_024320__ 893 CAAAAGGACGTGACATCCTTAAA-ATTCAGCCTGTTTCCGATGCTCCGGT 941
BSNT_03950___ 903 TAACGCGATTTCCACATGTGTCAAAGGGAAATTCGGCTGGGATTTCGTCA 952
|||||||||||||||.|||||.||||||||||||||||||||.|||||.|
RBAM_024320__ 942 TAACGCGATTTCCACTTGTGTGAAAGGGAAATTCGGCTGGGACTTCGTGA 991
BSNT_03950___ 953 ATTCTGAGGAGCGAATCACAAAGCCTTTAATCCGTAAAAATGGAGCCTTT 1002
||||.||.||.||.||.|||||.||..|.|||||.|||||.||.||.|||
RBAM_024320__ 992 ATTCGGAAGAACGGATTACAAAACCGCTTATCCGGAAAAACGGCGCATTT 1041
BSNT_03950___ 1003 GTGGAATCTTCTTGGGAAGAGGCCCTCGATCTTGTCGCAAGCAGATTAGG 1052
||.|||||.||.||||||||.||.||.|||||||||||....|||.|.||
RBAM_024320__ 1042 GTTGAATCGTCATGGGAAGAAGCTCTTGATCTTGTCGCTTCAAGACTCGG 1091
BSNT_03950___ 1053 ATCAATTAAAGAGCAGTACGGTAAAGGCTCTGTCGGGTTTATTTCTTCTT 1102
.||.||.||.|...|..||||.||.||.||||||||.|||||||||||||
RBAM_024320__ 1092 TTCGATCAAGGCCGAACACGGAAATGGTTCTGTCGGTTTTATTTCTTCTT 1141
BSNT_03950___ 1103 CTAAAATTACGAATGAAGAAAACTACGTCATTCAAAAGCTAGCGCGTCAG 1152
|||||||||||||||||||.|||||||||||||||||..|.||.||.||.
RBAM_024320__ 1142 CTAAAATTACGAATGAAGACAACTACGTCATTCAAAAATTGGCACGCCAA 1191
BSNT_03950___ 1153 GTATTTGAAACAAACAATGTCGATAACTGCTCACGCTACTGCCAGTCTCC 1202
|||||||||||.|||||.||.||||||||||||||||||||||||||.||
RBAM_024320__ 1192 GTATTTGAAACCAACAACGTGGATAACTGCTCACGCTACTGCCAGTCACC 1241
BSNT_03950___ 1203 TGCTACAGACGGATTGTTCCGCACTGTCGGCATGGGCGGTGACGCTGGCA 1252
.||.||.|||||.||.||||||||.|||||.||||||||.|||||.||||
RBAM_024320__ 1242 GGCAACGGACGGCTTATTCCGCACCGTCGGTATGGGCGGAGACGCCGGCA 1291
BSNT_03950___ 1253 CGATTAAAGATATTGCCAAAGCCGGTCTCGTCATCATCGTCGGCGCCAAT 1302
|.|||||||||||.||.|||||.||.|||||..|||||||||||||||||
RBAM_024320__ 1292 CAATTAAAGATATCGCAAAAGCGGGCCTCGTGCTCATCGTCGGCGCCAAT 1341
BSNT_03950___ 1303 CCGGCGGAAGGACACCCGGTGCTCGCAACACGCGTCAAACGGGCGCACAA 1352
||||||||||||||.|||||.||.||.||||||||.|||||.||.||.||
RBAM_024320__ 1342 CCGGCGGAAGGACATCCGGTTCTGGCCACACGCGTGAAACGCGCCCATAA 1391
BSNT_03950___ 1353 GCTTCACGGTCAAAAACTGATTGTTGCCGACCTGCGTAAAAATGAGATGG 1402
.||.|||||.||||||||||||||||||||.|||||.|.||||||.||||
RBAM_024320__ 1392 ACTGCACGGCCAAAAACTGATTGTTGCCGATCTGCGCAGAAATGAAATGG 1441
BSNT_03950___ 1403 CCGAGCGATCTGATCTGTTCATCAGCCCTAAACAAGGCACAGACCAAGTC 1452
|.||.||.||.||.||.||.||||||||.||||||||.||.|||||.|||
RBAM_024320__ 1442 CTGAACGGTCCGACCTCTTTATCAGCCCGAAACAAGGGACTGACCAGGTC 1491
BSNT_03950___ 1453 TGGCTGATGGCTGTTACGAAATATATGATCGACCAAGGCTGGCACGATCA 1502
|||||.|||||.||.||||||||||||||.||||||||||||||||||||
RBAM_024320__ 1492 TGGCTCATGGCAGTAACGAAATATATGATTGACCAAGGCTGGCACGATCA 1541
BSNT_03950___ 1503 GGCGTTTATTGATGAGAATGTTAATTACTTTGAAGATTATAAAGAAACTC 1552
.||||||||||||||.|||||.||.||||||||.||||||||||||||.|
RBAM_024320__ 1542 AGCGTTTATTGATGAAAATGTCAACTACTTTGATGATTATAAAGAAACGC 1591
BSNT_03950___ 1553 TTAAAACGTATACGCTTGATTATGCAGAACGCATCACAGGCCTTTCAAAA 1602
|..|||..||.||..|.||.|||||.||.||||||||.||.|||||..|.
RBAM_024320__ 1592 TGGAAAAATACACATTGGACTATGCGGAGCGCATCACCGGACTTTCTCAG 1641
BSNT_03950___ 1603 GAAAACATCATTCAAATTGCTGAAATGATCCGTGATGCTGACGGTACTTG 1652
||.|..|||||.|..|||||.||||||||.||||||||.|||||.|||||
RBAM_024320__ 1642 GATACAATCATCCGCATTGCCGAAATGATTCGTGATGCAGACGGCACTTG 1691
BSNT_03950___ 1653 TGTCCTTTGGGGAATGGGTGTCACACAAAATACAGGCGGTTCTGATACAT 1702
|||.||||||||.|||||.||.||.||||||||||||||.||||||||||
RBAM_024320__ 1692 TGTTCTTTGGGGCATGGGCGTTACTCAAAATACAGGCGGCTCTGATACAT 1741
BSNT_03950___ 1703 CAGCAGCCATTTCAAACCTGCTTCTCGCTACGGGCAACTATCGCCGTCCA 1752
||||.||.||||||||||||||.||.||.||.||.|||||.||||||||.
RBAM_024320__ 1742 CAGCGGCGATTTCAAACCTGCTGCTTGCCACAGGAAACTACCGCCGTCCG 1791
BSNT_03950___ 1753 GGTGCCGGCGCTTATCCTCTGCGCGGACACAATAACGTGCAAGGCGCATG 1802
||.|||||.||.|||||.|||||.|||||.||.|||||.||||||||.||
RBAM_024320__ 1792 GGCGCCGGAGCCTATCCGCTGCGGGGACATAACAACGTTCAAGGCGCTTG 1841
BSNT_03950___ 1803 TGATATGGGAACATTGCCTGGCTGGCTGCCGGGATATCAGCATATTACAG 1852
.|||||||||||..|.||.||||||||.||||||||||||||||||||.|
RBAM_024320__ 1842 CGATATGGGAACTCTTCCAGGCTGGCTTCCGGGATATCAGCATATTACCG 1891
BSNT_03950___ 1853 ATGACAAGGCCCGCGCTAAATTTGAAGAGGCATATGGTGTCGAGATTGAT 1902
||||...|||.|||||||||||.|||.|.||.||.|||||.||.|||||.
RBAM_024320__ 1892 ATGATGCGGCACGCGCTAAATTCGAAAAAGCTTACGGTGTTGAAATTGAC 1941
BSNT_03950___ 1903 GGAAAGCCTGGTTTAGATAATATTCAAATGCTTCATGCCATTGAAGAAGG 1952
||.|||||.|||.|.||||||||..|||||||.|||||.|||||||||||
RBAM_024320__ 1942 GGCAAGCCGGGTCTTGATAATATCGAAATGCTCCATGCGATTGAAGAAGG 1991
BSNT_03950___ 1953 AAAAATGAAAGCTATGTATCTTGTCGGTGAGGATATGGCACTGGTCGATT 2002
|||.||||||||.||||||||.||||||||.||||||||.||.|||||||
RBAM_024320__ 1992 AAACATGAAAGCCATGTATCTCGTCGGTGAAGATATGGCGCTCGTCGATT 2041
BSNT_03950___ 2003 CAAACGCGAACCATGTGCATGATATTTTATCAAGCCTTGATTTCTTCGTG 2052
|||||||.||||||||.|||||.||||||||.||||||||||||||.||.
RBAM_024320__ 2042 CAAACGCCAACCATGTTCATGACATTTTATCCAGCCTTGATTTCTTTGTT 2091
BSNT_03950___ 2053 GTACAGGACATCTTCCTGTCAAGAACAGCTCAATATGCTGATGTCGTCTT 2102
||.|||||.||.|||||.||||||||.||.|||||.||.||||||.||.|
RBAM_024320__ 2092 GTGCAGGATATTTTCCTTTCAAGAACGGCGCAATACGCGGATGTCATCCT 2141
BSNT_03950___ 2103 GCCGGCCACTCCTTCACTTGAAAAAGACGGAACATTTACCAACACAGAAC 2152
|||.||...|||.||.|||||||||||||||||||||||.||||||||.|
RBAM_024320__ 2142 GCCTGCGGTTCCATCTCTTGAAAAAGACGGAACATTTACAAACACAGAGC 2191
BSNT_03950___ 2153 GCCGTGTCCAGCGATTGTATCAGGCGCTTCCGACGCTTGGTGACGCAAAA 2202
|.|||||.||..|.||||||||||||||||||||.||.||.||.||||||
RBAM_024320__ 2192 GGCGTGTGCAAAGGTTGTATCAGGCGCTTCCGACACTCGGCGATGCAAAA 2241
BSNT_03950___ 2203 CCGGACTGGTGGATTATTCAAGAGGTGGCAAACCGTTTAGGAGCGAATTG 2252
||.|||||||||||||||||.||.||.||.||.||||||||.||..||||
RBAM_024320__ 2242 CCCGACTGGTGGATTATTCAGGAAGTCGCCAATCGTTTAGGCGCTGATTG 2291
BSNT_03950___ 2253 GAATTACAGCCATCCAAGTGACATTTTCTCTGAAATGGCGAGTCTTTCTC 2302
||||||||..|||||.||.|||||||||||.|||||||||||.|||||||
RBAM_024320__ 2292 GAATTACACGCATCCTAGCGACATTTTCTCAGAAATGGCGAGCCTTTCTC 2341
BSNT_03950___ 2303 CTCTGTTTGCCAAAGCAAGCTATGAGGTGCTTGAAGGCTGGAACAGCTTC 2352
|.|||||.|..|||||||||||.||.||.|||...|||||||||||||||
RBAM_024320__ 2342 CGCTGTTCGGAAAAGCAAGCTACGACGTTCTTAGCGGCTGGAACAGCTTC 2391
BSNT_03950___ 2353 CTATGGGGCAGCTTCACAGGTGAAAGCACACCGCTTCTGTATGAAGACGG 2402
||||||||.|||||.||.||.||||||||.||||||||.|||||||||||
RBAM_024320__ 2392 CTATGGGGAAGCTTTACGGGAGAAAGCACTCCGCTTCTTTATGAAGACGG 2441
BSNT_03950___ 2403 ATTTAATTTCCCTGACAAAAAAGCCCGCTTTGCCCTTTCTGATTGGACCG 2452
.|||||.|||||.||||||||||||||.|||||.||....||||||...|
RBAM_024320__ 2442 CTTTAACTTCCCGGACAAAAAAGCCCGTTTTGCGCTGAGCGATTGGGTGG 2491
BSNT_03950___ 2453 AGCCAGCGGCATTTCCGGAGGAATATGACCTTCATATCAATAACGGCCGG 2502
||||.||.|.|||.||.||.|||||||||||.|||||.||.|||||.|||
RBAM_024320__ 2492 AGCCTGCTGTATTCCCTGAAGAATATGACCTGCATATTAACAACGGACGG 2541
BSNT_03950___ 2503 ATGCTGGAGCATTTCCACGAAGGAAACATGACAAATAAATCGAAAGGCAT 2552
|||||.||.||||||||||||||||||||||||||.||.||.||||||||
RBAM_024320__ 2542 ATGCTTGAACATTTCCACGAAGGAAACATGACAAACAAGTCAAAAGGCAT 2591
BSNT_03950___ 2553 CCAAGCGAAAGTGCCAAATGTATTCGTTGAGATCTCACCTGAGCTTGCAC 2602
.||..|.|||||.||..|||||||.|||||..|.||.||.|||||.||..
RBAM_024320__ 2592 TCAGTCTAAAGTTCCGGATGTATTTGTTGAAGTATCGCCGGAGCTCGCGG 2641
BSNT_03950___ 2603 AAGAGCGAGGTGTTTGTGACGGTTCGCTTGTACGGCTCGTTTCTCCGTTC 2652
..||.||.||..||||.|||||..|..|..|.||||||||.|||||.||.
RBAM_024320__ 2642 CTGAACGCGGAATTTGCGACGGGACAATGATCCGGCTCGTCTCTCCTTTT 2691
BSNT_03950___ 2653 GGAGCAGTCAAATTGAACGCGCTGATCACAGACCGGGTACGGAAAAATGA 2702
||.||.||.||||||||||||||..|.||||||||.||.||....|||||
RBAM_024320__ 2692 GGGGCGGTTAAATTGAACGCGCTTGTGACAGACCGCGTCCGCGCGAATGA 2741
BSNT_03950___ 2703 ACTCTATTTGCCAATGAACTCGACAGACAAGGAGTCAGCAATTAACTTCT 2752
.||.|||.||||.||||||||.|||||.||.||.||.||.|||||.|||.
RBAM_024320__ 2742 GCTTTATCTGCCGATGAACTCTACAGATAAAGATTCTGCGATTAATTTCC 2791
BSNT_03950___ 2753 TGACGGGCCCTGCAGCTGATAAACGGACGAACACGCCTGCTTATAAACAG 2802
||||.||.|||||...||||..||||||..|.||.|||||.|||||.|||
RBAM_024320__ 2792 TGACCGGGCCTGCGTATGATTCACGGACACATACACCTGCCTATAAGCAG 2841
BSNT_03950___ 2803 ACAAAGGTCCGCATGGAAGTGCTTGGCGGCTGTGAAACAGCGCCGCTTCC 2852
|||||.|||||||||||||||||.||...||||||.||..||||||||||
RBAM_024320__ 2842 ACAAAAGTCCGCATGGAAGTGCTCGGTTCCTGTGATACTCCGCCGCTTCC 2891
BSNT_03950___ 2853 AAAAACAAATCCGCGCAACAAAAAACGGCATCCGCAAAACGGAGTCGAAG 2902
.|||||.||||||||.|||||||||||.||||||||||||||.||.||||
RBAM_024320__ 2892 GAAAACGAATCCGCGGAACAAAAAACGTCATCCGCAAAACGGTGTGGAAG 2941
BSNT_03950___ 2903 CAGAAAGAAAATGGAACCGCCCTGGCTATGTCCATCTGACTGATTAA 2949
|..|..|||||||||||||.||.||||||||.||..|.|||||||||
RBAM_024320__ 2942 CTCAGCGAAAATGGAACCGTCCGGGCTATGTGCACTTAACTGATTAA 2988
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