Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03950 and RBAM_024320

See Amino acid alignment / Visit BSNT_03950 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:14
# Commandline: needle
#    -asequence dna-align/BSNT_03950___yrhE.1.9828.seq
#    -bsequence dna-align/RBAM_024320___yrhE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03950___yrhE-RBAM_024320___yrhE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03950___yrhE-RBAM_024320___yrhE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03950___yrhE
# 2: RBAM_024320___yrhE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2997
# Identity:    2404/2997 (80.2%)
# Similarity:  2404/2997 (80.2%)
# Gaps:          57/2997 ( 1.9%)
# Score: 9747.5
# 
#
#=======================================

BSNT_03950___      1 ----------------------------AT------GAAT-----ATGAT     11
                                                 ||      ||||     .|||.
RBAM_024320__      1 GTGCATGGCTTTTTTTCGAGTTTAAAAGATGGAGGGGAATTGGAAGTGAC     50

BSNT_03950___     12 GGACGGTAAGTCGATCAGTGTCCGTGTAGACGGAACAGAAATTCAAGCAC     61
                     .||||.|.||||.|||.|||||....|.|||||.||.||...|.||||||
RBAM_024320__     51 AGACGTTCAGTCTATCCGTGTCAAAATTGACGGCACGGAGTATGAAGCAC    100

BSNT_03950___     62 GAGCAGGGG-CCACAATATTAGATATTTTAAATGAAAACGGAATTGAGTA    110
                     .|| ||||| |.|..||.||||||||||||||..||||||||||||||..
RBAM_024320__    101 CAG-AGGGGTCTAAGATTTTAGATATTTTAAACCAAAACGGAATTGAGAT    149

BSNT_03950___    111 CCCGCAGATTTGCCACGTACCAGAGGTTGACCCGATTCAAACTTGTGATA    160
                     .|||||.||.|||||.|||||.||.||.||.|||||||||||.|||||.|
RBAM_024320__    150 TCCGCAAATATGCCATGTACCGGAAGTGGATCCGATTCAAACATGTGACA    199

BSNT_03950___    161 CTTGCATAGTAGAGGCAAACGGCAAGCTGGTTCGTTCATGCGCGACGGTT    210
                     |.||.||.||.||.|.||||||.||..||...||.||.||..|.||||.|
RBAM_024320__    200 CCTGTATTGTTGAAGTAAACGGGAAATTGCAGCGCTCTTGTTCCACGGCT    249

BSNT_03950___    211 GCAGAAAACGGGATGTCTATTGATC---TA--TCAGGAAATCGAGTGAAA    255
                     |||||||||||||||||.||  .||   ||  ||.||||   |.||.|||
RBAM_024320__    250 GCAGAAAACGGGATGTCCAT--CTCGCTTACGTCGGGAA---GGGTAAAA    294

BSNT_03950___    256 GAAGCGCAAACCGAAGCGATGGACCGCCTTCTTGAAAATCATTTGCTGTA    305
                     ||.||.||.||.||.||.|||||||||||.||.||.|||||..||||.||
RBAM_024320__    295 GAGGCTCAGACAGAGGCCATGGACCGCCTGCTCGAGAATCACCTGCTTTA    344

BSNT_03950___    306 TTGTACAGTTTGCGATAACAACAATGGAAACTGTACGCTGCATAATACAG    355
                     .|||||.||.||||||||||||||.||.||.||.||.|||||||||||||
RBAM_024320__    345 CTGTACGGTATGCGATAACAACAACGGCAATTGCACACTGCATAATACAG    394

BSNT_03950___    356 CGGAAATGATGGGGATCGAGCATCAAAAATACCCATACACGCCAAAAGAA    405
                     |||||||||||||.||.||||||||.|||||.||.||.|||||.|||||.
RBAM_024320__    395 CGGAAATGATGGGAATTGAGCATCAGAAATATCCGTATACGCCGAAAGAT    444

BSNT_03950___    406 GATCCTTCTTGCGCAGTTGATATGTCTCATCCTTTTTACCGCTATGATCC    455
                     |||.|....|||||.||||||||||||||.||.|||||||||||||||||
RBAM_024320__    445 GATTCAAAGTGCGCGGTTGATATGTCTCACCCGTTTTACCGCTATGATCC    494

BSNT_03950___    456 AAACCAATGTATTGCCTGCGGCCAGTGTGTTGAGGTCTGTCAAAACCTTC    505
                     .||||||||.||.|||||||||||.|||||.||.||.|||||||||||||
RBAM_024320__    495 GAACCAATGCATCGCCTGCGGCCAATGTGTGGAAGTGTGTCAAAACCTTC    544

BSNT_03950___    506 AGGTAAATGAAACACTCTCAATCGACTGGGAACGCGAACGCCCTCGCGTC    555
                     ||||.|||||.||.||.||.||.||.|||||.|||||.|||||.||.|||
RBAM_024320__    545 AGGTGAATGAGACCCTTTCGATTGATTGGGAGCGCGACCGCCCGCGGGTC    594

BSNT_03950___    556 ATTTGGGATGAGGGAGTTCCGATCAATGAATCTTCCTGTGTCAGCTGCGG    605
                     |||||||||||.||.||..|.||.||||||||||||||.|||||||||||
RBAM_024320__    595 ATTTGGGATGAAGGCGTCGCCATTAATGAATCTTCCTGCGTCAGCTGCGG    644

BSNT_03950___    606 TCAGTGTGTCACAGTATGTCCATGTAATGCACTGATGGAAAAATCAATGC    655
                     .|||||||||||.||.|||||.|||||.||||||||||||||||||||||
RBAM_024320__    645 CCAGTGTGTCACTGTCTGTCCTTGTAACGCACTGATGGAAAAATCAATGC    694

BSNT_03950___    656 TCGGGCAGGCTGGCTTTATGACAGGGATTAAAGAGGACGTCATGGAACCG    705
                     ||||.||.||.||.|||||||||||.||.|||||.||.||||||||||||
RBAM_024320__    695 TCGGCCAAGCCGGATTTATGACAGGAATAAAAGAAGATGTCATGGAACCG    744

BSNT_03950___    706 ATGATTGACCTCGTGAAAAATGTTGAACCGGGGTATGGCAGCATTTTTGC    755
                     ||||||||..|.|||||||||||||||||.|..|||...|||||.||.||
RBAM_024320__    745 ATGATTGATTTAGTGAAAAATGTTGAACCCGACTATACAAGCATCTTCGC    794

BSNT_03950___    756 CATTTCTGAAGTCGAAGCGGCAATGCGTG--AAACGAGAACGAAAAAAAC    803
                     |.|.||||||||.||||||||.|||||.|  ||||  |.|||||||||||
RBAM_024320__    795 CGTGTCTGAAGTGGAAGCGGCTATGCGCGATAAAC--GGACGAAAAAAAC    842

BSNT_03950___    804 GAAAACTGTATGTACGTTCTGCGGTGTCGGGTGTTCATTTGAAGTATGGA    853
                     ||||||.||.||.|||||||||||.|||||.||.||.|||||||||||||
RBAM_024320__    843 GAAAACAGTCTGCACGTTCTGCGGCGTCGGATGCTCTTTTGAAGTATGGA    892

BSNT_03950___    854 CAAAAGGACGGGATAT-TTTAAAGATCCAGCCTGTTTCTGATGCTCCGGT    902
                     ||||||||||.||.|| .||||| ||.|||||||||||.|||||||||||
RBAM_024320__    893 CAAAAGGACGTGACATCCTTAAA-ATTCAGCCTGTTTCCGATGCTCCGGT    941

BSNT_03950___    903 TAACGCGATTTCCACATGTGTCAAAGGGAAATTCGGCTGGGATTTCGTCA    952
                     |||||||||||||||.|||||.||||||||||||||||||||.|||||.|
RBAM_024320__    942 TAACGCGATTTCCACTTGTGTGAAAGGGAAATTCGGCTGGGACTTCGTGA    991

BSNT_03950___    953 ATTCTGAGGAGCGAATCACAAAGCCTTTAATCCGTAAAAATGGAGCCTTT   1002
                     ||||.||.||.||.||.|||||.||..|.|||||.|||||.||.||.|||
RBAM_024320__    992 ATTCGGAAGAACGGATTACAAAACCGCTTATCCGGAAAAACGGCGCATTT   1041

BSNT_03950___   1003 GTGGAATCTTCTTGGGAAGAGGCCCTCGATCTTGTCGCAAGCAGATTAGG   1052
                     ||.|||||.||.||||||||.||.||.|||||||||||....|||.|.||
RBAM_024320__   1042 GTTGAATCGTCATGGGAAGAAGCTCTTGATCTTGTCGCTTCAAGACTCGG   1091

BSNT_03950___   1053 ATCAATTAAAGAGCAGTACGGTAAAGGCTCTGTCGGGTTTATTTCTTCTT   1102
                     .||.||.||.|...|..||||.||.||.||||||||.|||||||||||||
RBAM_024320__   1092 TTCGATCAAGGCCGAACACGGAAATGGTTCTGTCGGTTTTATTTCTTCTT   1141

BSNT_03950___   1103 CTAAAATTACGAATGAAGAAAACTACGTCATTCAAAAGCTAGCGCGTCAG   1152
                     |||||||||||||||||||.|||||||||||||||||..|.||.||.||.
RBAM_024320__   1142 CTAAAATTACGAATGAAGACAACTACGTCATTCAAAAATTGGCACGCCAA   1191

BSNT_03950___   1153 GTATTTGAAACAAACAATGTCGATAACTGCTCACGCTACTGCCAGTCTCC   1202
                     |||||||||||.|||||.||.||||||||||||||||||||||||||.||
RBAM_024320__   1192 GTATTTGAAACCAACAACGTGGATAACTGCTCACGCTACTGCCAGTCACC   1241

BSNT_03950___   1203 TGCTACAGACGGATTGTTCCGCACTGTCGGCATGGGCGGTGACGCTGGCA   1252
                     .||.||.|||||.||.||||||||.|||||.||||||||.|||||.||||
RBAM_024320__   1242 GGCAACGGACGGCTTATTCCGCACCGTCGGTATGGGCGGAGACGCCGGCA   1291

BSNT_03950___   1253 CGATTAAAGATATTGCCAAAGCCGGTCTCGTCATCATCGTCGGCGCCAAT   1302
                     |.|||||||||||.||.|||||.||.|||||..|||||||||||||||||
RBAM_024320__   1292 CAATTAAAGATATCGCAAAAGCGGGCCTCGTGCTCATCGTCGGCGCCAAT   1341

BSNT_03950___   1303 CCGGCGGAAGGACACCCGGTGCTCGCAACACGCGTCAAACGGGCGCACAA   1352
                     ||||||||||||||.|||||.||.||.||||||||.|||||.||.||.||
RBAM_024320__   1342 CCGGCGGAAGGACATCCGGTTCTGGCCACACGCGTGAAACGCGCCCATAA   1391

BSNT_03950___   1353 GCTTCACGGTCAAAAACTGATTGTTGCCGACCTGCGTAAAAATGAGATGG   1402
                     .||.|||||.||||||||||||||||||||.|||||.|.||||||.||||
RBAM_024320__   1392 ACTGCACGGCCAAAAACTGATTGTTGCCGATCTGCGCAGAAATGAAATGG   1441

BSNT_03950___   1403 CCGAGCGATCTGATCTGTTCATCAGCCCTAAACAAGGCACAGACCAAGTC   1452
                     |.||.||.||.||.||.||.||||||||.||||||||.||.|||||.|||
RBAM_024320__   1442 CTGAACGGTCCGACCTCTTTATCAGCCCGAAACAAGGGACTGACCAGGTC   1491

BSNT_03950___   1453 TGGCTGATGGCTGTTACGAAATATATGATCGACCAAGGCTGGCACGATCA   1502
                     |||||.|||||.||.||||||||||||||.||||||||||||||||||||
RBAM_024320__   1492 TGGCTCATGGCAGTAACGAAATATATGATTGACCAAGGCTGGCACGATCA   1541

BSNT_03950___   1503 GGCGTTTATTGATGAGAATGTTAATTACTTTGAAGATTATAAAGAAACTC   1552
                     .||||||||||||||.|||||.||.||||||||.||||||||||||||.|
RBAM_024320__   1542 AGCGTTTATTGATGAAAATGTCAACTACTTTGATGATTATAAAGAAACGC   1591

BSNT_03950___   1553 TTAAAACGTATACGCTTGATTATGCAGAACGCATCACAGGCCTTTCAAAA   1602
                     |..|||..||.||..|.||.|||||.||.||||||||.||.|||||..|.
RBAM_024320__   1592 TGGAAAAATACACATTGGACTATGCGGAGCGCATCACCGGACTTTCTCAG   1641

BSNT_03950___   1603 GAAAACATCATTCAAATTGCTGAAATGATCCGTGATGCTGACGGTACTTG   1652
                     ||.|..|||||.|..|||||.||||||||.||||||||.|||||.|||||
RBAM_024320__   1642 GATACAATCATCCGCATTGCCGAAATGATTCGTGATGCAGACGGCACTTG   1691

BSNT_03950___   1653 TGTCCTTTGGGGAATGGGTGTCACACAAAATACAGGCGGTTCTGATACAT   1702
                     |||.||||||||.|||||.||.||.||||||||||||||.||||||||||
RBAM_024320__   1692 TGTTCTTTGGGGCATGGGCGTTACTCAAAATACAGGCGGCTCTGATACAT   1741

BSNT_03950___   1703 CAGCAGCCATTTCAAACCTGCTTCTCGCTACGGGCAACTATCGCCGTCCA   1752
                     ||||.||.||||||||||||||.||.||.||.||.|||||.||||||||.
RBAM_024320__   1742 CAGCGGCGATTTCAAACCTGCTGCTTGCCACAGGAAACTACCGCCGTCCG   1791

BSNT_03950___   1753 GGTGCCGGCGCTTATCCTCTGCGCGGACACAATAACGTGCAAGGCGCATG   1802
                     ||.|||||.||.|||||.|||||.|||||.||.|||||.||||||||.||
RBAM_024320__   1792 GGCGCCGGAGCCTATCCGCTGCGGGGACATAACAACGTTCAAGGCGCTTG   1841

BSNT_03950___   1803 TGATATGGGAACATTGCCTGGCTGGCTGCCGGGATATCAGCATATTACAG   1852
                     .|||||||||||..|.||.||||||||.||||||||||||||||||||.|
RBAM_024320__   1842 CGATATGGGAACTCTTCCAGGCTGGCTTCCGGGATATCAGCATATTACCG   1891

BSNT_03950___   1853 ATGACAAGGCCCGCGCTAAATTTGAAGAGGCATATGGTGTCGAGATTGAT   1902
                     ||||...|||.|||||||||||.|||.|.||.||.|||||.||.|||||.
RBAM_024320__   1892 ATGATGCGGCACGCGCTAAATTCGAAAAAGCTTACGGTGTTGAAATTGAC   1941

BSNT_03950___   1903 GGAAAGCCTGGTTTAGATAATATTCAAATGCTTCATGCCATTGAAGAAGG   1952
                     ||.|||||.|||.|.||||||||..|||||||.|||||.|||||||||||
RBAM_024320__   1942 GGCAAGCCGGGTCTTGATAATATCGAAATGCTCCATGCGATTGAAGAAGG   1991

BSNT_03950___   1953 AAAAATGAAAGCTATGTATCTTGTCGGTGAGGATATGGCACTGGTCGATT   2002
                     |||.||||||||.||||||||.||||||||.||||||||.||.|||||||
RBAM_024320__   1992 AAACATGAAAGCCATGTATCTCGTCGGTGAAGATATGGCGCTCGTCGATT   2041

BSNT_03950___   2003 CAAACGCGAACCATGTGCATGATATTTTATCAAGCCTTGATTTCTTCGTG   2052
                     |||||||.||||||||.|||||.||||||||.||||||||||||||.||.
RBAM_024320__   2042 CAAACGCCAACCATGTTCATGACATTTTATCCAGCCTTGATTTCTTTGTT   2091

BSNT_03950___   2053 GTACAGGACATCTTCCTGTCAAGAACAGCTCAATATGCTGATGTCGTCTT   2102
                     ||.|||||.||.|||||.||||||||.||.|||||.||.||||||.||.|
RBAM_024320__   2092 GTGCAGGATATTTTCCTTTCAAGAACGGCGCAATACGCGGATGTCATCCT   2141

BSNT_03950___   2103 GCCGGCCACTCCTTCACTTGAAAAAGACGGAACATTTACCAACACAGAAC   2152
                     |||.||...|||.||.|||||||||||||||||||||||.||||||||.|
RBAM_024320__   2142 GCCTGCGGTTCCATCTCTTGAAAAAGACGGAACATTTACAAACACAGAGC   2191

BSNT_03950___   2153 GCCGTGTCCAGCGATTGTATCAGGCGCTTCCGACGCTTGGTGACGCAAAA   2202
                     |.|||||.||..|.||||||||||||||||||||.||.||.||.||||||
RBAM_024320__   2192 GGCGTGTGCAAAGGTTGTATCAGGCGCTTCCGACACTCGGCGATGCAAAA   2241

BSNT_03950___   2203 CCGGACTGGTGGATTATTCAAGAGGTGGCAAACCGTTTAGGAGCGAATTG   2252
                     ||.|||||||||||||||||.||.||.||.||.||||||||.||..||||
RBAM_024320__   2242 CCCGACTGGTGGATTATTCAGGAAGTCGCCAATCGTTTAGGCGCTGATTG   2291

BSNT_03950___   2253 GAATTACAGCCATCCAAGTGACATTTTCTCTGAAATGGCGAGTCTTTCTC   2302
                     ||||||||..|||||.||.|||||||||||.|||||||||||.|||||||
RBAM_024320__   2292 GAATTACACGCATCCTAGCGACATTTTCTCAGAAATGGCGAGCCTTTCTC   2341

BSNT_03950___   2303 CTCTGTTTGCCAAAGCAAGCTATGAGGTGCTTGAAGGCTGGAACAGCTTC   2352
                     |.|||||.|..|||||||||||.||.||.|||...|||||||||||||||
RBAM_024320__   2342 CGCTGTTCGGAAAAGCAAGCTACGACGTTCTTAGCGGCTGGAACAGCTTC   2391

BSNT_03950___   2353 CTATGGGGCAGCTTCACAGGTGAAAGCACACCGCTTCTGTATGAAGACGG   2402
                     ||||||||.|||||.||.||.||||||||.||||||||.|||||||||||
RBAM_024320__   2392 CTATGGGGAAGCTTTACGGGAGAAAGCACTCCGCTTCTTTATGAAGACGG   2441

BSNT_03950___   2403 ATTTAATTTCCCTGACAAAAAAGCCCGCTTTGCCCTTTCTGATTGGACCG   2452
                     .|||||.|||||.||||||||||||||.|||||.||....||||||...|
RBAM_024320__   2442 CTTTAACTTCCCGGACAAAAAAGCCCGTTTTGCGCTGAGCGATTGGGTGG   2491

BSNT_03950___   2453 AGCCAGCGGCATTTCCGGAGGAATATGACCTTCATATCAATAACGGCCGG   2502
                     ||||.||.|.|||.||.||.|||||||||||.|||||.||.|||||.|||
RBAM_024320__   2492 AGCCTGCTGTATTCCCTGAAGAATATGACCTGCATATTAACAACGGACGG   2541

BSNT_03950___   2503 ATGCTGGAGCATTTCCACGAAGGAAACATGACAAATAAATCGAAAGGCAT   2552
                     |||||.||.||||||||||||||||||||||||||.||.||.||||||||
RBAM_024320__   2542 ATGCTTGAACATTTCCACGAAGGAAACATGACAAACAAGTCAAAAGGCAT   2591

BSNT_03950___   2553 CCAAGCGAAAGTGCCAAATGTATTCGTTGAGATCTCACCTGAGCTTGCAC   2602
                     .||..|.|||||.||..|||||||.|||||..|.||.||.|||||.||..
RBAM_024320__   2592 TCAGTCTAAAGTTCCGGATGTATTTGTTGAAGTATCGCCGGAGCTCGCGG   2641

BSNT_03950___   2603 AAGAGCGAGGTGTTTGTGACGGTTCGCTTGTACGGCTCGTTTCTCCGTTC   2652
                     ..||.||.||..||||.|||||..|..|..|.||||||||.|||||.||.
RBAM_024320__   2642 CTGAACGCGGAATTTGCGACGGGACAATGATCCGGCTCGTCTCTCCTTTT   2691

BSNT_03950___   2653 GGAGCAGTCAAATTGAACGCGCTGATCACAGACCGGGTACGGAAAAATGA   2702
                     ||.||.||.||||||||||||||..|.||||||||.||.||....|||||
RBAM_024320__   2692 GGGGCGGTTAAATTGAACGCGCTTGTGACAGACCGCGTCCGCGCGAATGA   2741

BSNT_03950___   2703 ACTCTATTTGCCAATGAACTCGACAGACAAGGAGTCAGCAATTAACTTCT   2752
                     .||.|||.||||.||||||||.|||||.||.||.||.||.|||||.|||.
RBAM_024320__   2742 GCTTTATCTGCCGATGAACTCTACAGATAAAGATTCTGCGATTAATTTCC   2791

BSNT_03950___   2753 TGACGGGCCCTGCAGCTGATAAACGGACGAACACGCCTGCTTATAAACAG   2802
                     ||||.||.|||||...||||..||||||..|.||.|||||.|||||.|||
RBAM_024320__   2792 TGACCGGGCCTGCGTATGATTCACGGACACATACACCTGCCTATAAGCAG   2841

BSNT_03950___   2803 ACAAAGGTCCGCATGGAAGTGCTTGGCGGCTGTGAAACAGCGCCGCTTCC   2852
                     |||||.|||||||||||||||||.||...||||||.||..||||||||||
RBAM_024320__   2842 ACAAAAGTCCGCATGGAAGTGCTCGGTTCCTGTGATACTCCGCCGCTTCC   2891

BSNT_03950___   2853 AAAAACAAATCCGCGCAACAAAAAACGGCATCCGCAAAACGGAGTCGAAG   2902
                     .|||||.||||||||.|||||||||||.||||||||||||||.||.||||
RBAM_024320__   2892 GAAAACGAATCCGCGGAACAAAAAACGTCATCCGCAAAACGGTGTGGAAG   2941

BSNT_03950___   2903 CAGAAAGAAAATGGAACCGCCCTGGCTATGTCCATCTGACTGATTAA   2949
                     |..|..|||||||||||||.||.||||||||.||..|.|||||||||
RBAM_024320__   2942 CTCAGCGAAAATGGAACCGTCCGGGCTATGTGCACTTAACTGATTAA   2988


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