Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03938 and RBAM_024270
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:13
# Commandline: needle
# -asequence dna-align/BSNT_03938___yrhI.1.9828.seq
# -bsequence dna-align/RBAM_024270___yrhI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03938___yrhI-RBAM_024270___yrhI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03938___yrhI-RBAM_024270___yrhI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03938___yrhI
# 2: RBAM_024270___yrhI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 647
# Identity: 386/647 (59.7%)
# Similarity: 386/647 (59.7%)
# Gaps: 136/647 (21.0%)
# Score: 1227.0
#
#
#=======================================
BSNT_03938___ 0 -------------------------------------------------- 0
RBAM_024270__ 1 ATGAATATTCATTCCGCGTTTAGAAAGGGGGATGAAATGACAGCTTCAAA 50
BSNT_03938___ 1 ----------ATGATTATGAAAGCGTCAGTCTCACTT--TTTACGGAAAG 38
.|.|||||||||||||| .||.|||| |||||.||.||
RBAM_024270__ 51 TAAGGTTGAACTCATTATGAAAGCGTC--GCTTACTTTGTTTACAGATAG 98
BSNT_03938___ 39 GGGTTTTGACGCTACCACTATTCCTATGATAGCTGAACGTGCTCATGTAG 88
.||.||||||||.||.||.|||||.|||||.||.|..|..||..||||.|
RBAM_024270__ 99 AGGATTTGACGCCACGACGATTCCGATGATTGCCGCTCAGGCCGATGTCG 148
BSNT_03938___ 89 GGACAGGAACGATCTATCGTTATTTTGACAGCAAAGAAACACTCGTTAAC 138
|.||.||.||.||.||.|||||.||||||||.|||||.|||||.||.|||
RBAM_024270__ 149 GAACCGGCACAATTTACCGTTACTTTGACAGTAAAGAGACACTTGTGAAC 198
BSNT_03938___ 139 GTACTGTTTCAAGAAAGCATCCAGCGATTTACGGAAAAACTGAAGCAAGA 188
|||||||.|||.|||||....|||||.||||.|.|||||.| |||.|
RBAM_024270__ 199 GTACTGTATCAGGAAAGTGCGCAGCGTTTTATGAAAAAAGT----CAAAA 244
BSNT_03938___ 189 CG---TTTCAG----AATTGCCTGTCAGAGAAGGCTTTCACCACGTATTT 231
|| |||||| .|| ||||.||||||||.|||||.|||.|.|||
RBAM_024270__ 245 CGGACTTTCAGGGGATAT---CTGTTAGAGAAGGGTTTCATCACCTGTTT 291
BSNT_03938___ 232 TGCTGTCTCGTTCAGTTTACGAAAGAGAGCGACTATGCGCTTTTTTTTCT 281
|..|||||..||.|.||||||||.||.||.||.|||||..|.||||||||
RBAM_024270__ 292 TATTGTCTGATTGATTTTACGAAGGAAAGTGAGTATGCATTGTTTTTTCT 341
BSNT_03938___ 282 TGAAACAAAAAAAGATGCTCATTACT---TAAATCATACAAGCAAAAA-- 326
||||||.||.||.||.|| .|||| |.|||.|.||.|||...||
RBAM_024270__ 342 TGAAACGAATAAGGACGC---CTACTTTCTGAATGAAACGAGCCGTAAGC 388
BSNT_03938___ 327 --AATGATAGAAAATCTGACTCAAATGCTTGATGACTATTTTAATAAGGG 374
..|||| |||| |.||.||.||||||||.|.||.||||.|....||
RBAM_024270__ 389 TTCTTGAT-GAAA---TAACACAGATGCTTGACGTCTTTTTTCAGCGCGG 434
BSNT_03938___ 375 AAAAGCGGAAGGCGTGATTCGCAGCCTGCCCTCTAATGTGTTAATTGCGA 424
.||..|.|||||||||.|.||||..|||||.||.||||||.|.||.|||.
RBAM_024270__ 435 CAAGTCTGAAGGCGTGCTCCGCAATCTGCCGTCCAATGTGCTGATGGCGC 484
BSNT_03938___ 425 TTGTATTAGGGGCGTTTCTCAAGATATATCAGCTCGTTCAAACAGG---- 470
|..|..|.|||||.|.||||||..|.||||||||.||.|..||.||
RBAM_024270__ 485 TGCTGCTCGGGGCATATCTCAAACTCTATCAGCTTGTCCGGACGGGAAGC 534
BSNT_03938___ 471 --TGATATAGAGATGGACA---------CTGATTTAATTACTGAATTGGA 509
.||.||| ||| |||| || ||||||||
RBAM_024270__ 535 GTCGAAATA-------ACAAAACCGTTTCTGA---AA-----GAATTGGA 569
BSNT_03938___ 510 ACAATGCTGCTGGGACGCCATTA-AGCTTCATTCATCACAAAAATAG 555
||||||.|..|||||.|||||.| |.| |||||.|
RBAM_024270__ 570 ACAATGTTCTTGGGATGCCATCAGAAC-TCATTAA------------ 603
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