Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03938 and RBAM_024270

See Amino acid alignment / Visit BSNT_03938 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:13
# Commandline: needle
#    -asequence dna-align/BSNT_03938___yrhI.1.9828.seq
#    -bsequence dna-align/RBAM_024270___yrhI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03938___yrhI-RBAM_024270___yrhI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03938___yrhI-RBAM_024270___yrhI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03938___yrhI
# 2: RBAM_024270___yrhI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 647
# Identity:     386/647 (59.7%)
# Similarity:   386/647 (59.7%)
# Gaps:         136/647 (21.0%)
# Score: 1227.0
# 
#
#=======================================

BSNT_03938___      0 --------------------------------------------------      0
                                                                       
RBAM_024270__      1 ATGAATATTCATTCCGCGTTTAGAAAGGGGGATGAAATGACAGCTTCAAA     50

BSNT_03938___      1 ----------ATGATTATGAAAGCGTCAGTCTCACTT--TTTACGGAAAG     38
                               .|.||||||||||||||  .||.||||  |||||.||.||
RBAM_024270__     51 TAAGGTTGAACTCATTATGAAAGCGTC--GCTTACTTTGTTTACAGATAG     98

BSNT_03938___     39 GGGTTTTGACGCTACCACTATTCCTATGATAGCTGAACGTGCTCATGTAG     88
                     .||.||||||||.||.||.|||||.|||||.||.|..|..||..||||.|
RBAM_024270__     99 AGGATTTGACGCCACGACGATTCCGATGATTGCCGCTCAGGCCGATGTCG    148

BSNT_03938___     89 GGACAGGAACGATCTATCGTTATTTTGACAGCAAAGAAACACTCGTTAAC    138
                     |.||.||.||.||.||.|||||.||||||||.|||||.|||||.||.|||
RBAM_024270__    149 GAACCGGCACAATTTACCGTTACTTTGACAGTAAAGAGACACTTGTGAAC    198

BSNT_03938___    139 GTACTGTTTCAAGAAAGCATCCAGCGATTTACGGAAAAACTGAAGCAAGA    188
                     |||||||.|||.|||||....|||||.||||.|.|||||.|    |||.|
RBAM_024270__    199 GTACTGTATCAGGAAAGTGCGCAGCGTTTTATGAAAAAAGT----CAAAA    244

BSNT_03938___    189 CG---TTTCAG----AATTGCCTGTCAGAGAAGGCTTTCACCACGTATTT    231
                     ||   ||||||    .||   ||||.||||||||.|||||.|||.|.|||
RBAM_024270__    245 CGGACTTTCAGGGGATAT---CTGTTAGAGAAGGGTTTCATCACCTGTTT    291

BSNT_03938___    232 TGCTGTCTCGTTCAGTTTACGAAAGAGAGCGACTATGCGCTTTTTTTTCT    281
                     |..|||||..||.|.||||||||.||.||.||.|||||..|.||||||||
RBAM_024270__    292 TATTGTCTGATTGATTTTACGAAGGAAAGTGAGTATGCATTGTTTTTTCT    341

BSNT_03938___    282 TGAAACAAAAAAAGATGCTCATTACT---TAAATCATACAAGCAAAAA--    326
                     ||||||.||.||.||.||   .||||   |.|||.|.||.|||...||  
RBAM_024270__    342 TGAAACGAATAAGGACGC---CTACTTTCTGAATGAAACGAGCCGTAAGC    388

BSNT_03938___    327 --AATGATAGAAAATCTGACTCAAATGCTTGATGACTATTTTAATAAGGG    374
                       ..|||| ||||   |.||.||.||||||||.|.||.||||.|....||
RBAM_024270__    389 TTCTTGAT-GAAA---TAACACAGATGCTTGACGTCTTTTTTCAGCGCGG    434

BSNT_03938___    375 AAAAGCGGAAGGCGTGATTCGCAGCCTGCCCTCTAATGTGTTAATTGCGA    424
                     .||..|.|||||||||.|.||||..|||||.||.||||||.|.||.|||.
RBAM_024270__    435 CAAGTCTGAAGGCGTGCTCCGCAATCTGCCGTCCAATGTGCTGATGGCGC    484

BSNT_03938___    425 TTGTATTAGGGGCGTTTCTCAAGATATATCAGCTCGTTCAAACAGG----    470
                     |..|..|.|||||.|.||||||..|.||||||||.||.|..||.||    
RBAM_024270__    485 TGCTGCTCGGGGCATATCTCAAACTCTATCAGCTTGTCCGGACGGGAAGC    534

BSNT_03938___    471 --TGATATAGAGATGGACA---------CTGATTTAATTACTGAATTGGA    509
                       .||.|||       |||         ||||   ||     ||||||||
RBAM_024270__    535 GTCGAAATA-------ACAAAACCGTTTCTGA---AA-----GAATTGGA    569

BSNT_03938___    510 ACAATGCTGCTGGGACGCCATTA-AGCTTCATTCATCACAAAAATAG    555
                     ||||||.|..|||||.|||||.| |.| |||||.|            
RBAM_024270__    570 ACAATGTTCTTGGGATGCCATCAGAAC-TCATTAA------------    603


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