Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_03822 and RBAM_024000

See Amino acid alignment / Visit BSNT_03822 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:09
# Commandline: needle
#    -asequence dna-align/BSNT_03822___yqeF.1.9828.seq
#    -bsequence dna-align/RBAM_024000___yqeF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03822___yqeF-RBAM_024000___yqeF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03822___yqeF-RBAM_024000___yqeF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03822___yqeF
# 2: RBAM_024000___yqeF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 760
# Identity:     541/760 (71.2%)
# Similarity:   541/760 (71.2%)
# Gaps:          56/760 ( 7.4%)
# Score: 1901.5
# 
#
#=======================================

BSNT_03822___      1 ATGAAACATTTTATCATCCTTTTCCT-------TCTG-CTGTTCGTTACA     42
                     |||||  .|||..|..||.||||..|       |||| ||.||      |
RBAM_024000__      1 ATGAA--GTTTGCTGTTCTTTTTATTACGATAATCTGTCTATT------A     42

BSNT_03822___     43 GCAGGATGCGAGGGAAGGGGATACGAAGA------CGTTGTAGCATTTGG     86
                     .|||||||||..|   .|||   ||||||      .|||||.||.||.||
RBAM_024000__     43 TCAGGATGCGCCG---CGGG---CGAAGAAAAAAGTGTTGTCGCGTTCGG     86

BSNT_03822___     87 TGACAGTAATACGCGTGGCTCAAATTGGGATTATCGCGATTATCCAAAAG    136
                     .|||||.||||||||.||.||.||.|||||||||||.||||||||.||.|
RBAM_024000__     87 CGACAGCAATACGCGCGGTTCCAACTGGGATTATCGTGATTATCCGAAGG    136

BSNT_03822___    137 CACAGCAGTGGGTCAATATATTAAAAACAGCTGAGCGCGGTAACCTT---    183
                     |.|||||||||||.||.||.|||||||||||.||.|||||....|||   
RBAM_024000__    137 CGCAGCAGTGGGTAAACATTTTAAAAACAGCGGAACGCGGCCGTCTTACG    186

BSNT_03822___    184 GATATACTCAATGCGGGAATCGGCGGACAGACGACAGAGGATGCCCGTCT    233
                     |.||||   |||||||||||.|||||.||||||||.||||||||.||.||
RBAM_024000__    187 GTTATA---AATGCGGGAATAGGCGGCCAGACGACTGAGGATGCGCGCCT    233

BSNT_03822___    234 CCGATTTCAGACAGATGTGCTGGATCAAAAACCGAAGTATTTGTTTATTA    283
                     .||.|||||.|..||.||||||||.|..||.||..|.|||||.|||||.|
RBAM_024000__    234 GCGCTTTCAAAGCGACGTGCTGGACCGTAAGCCCCAATATTTATTTATCA    283

BSNT_03822___    284 TGTTCGGCACCAATGACGCTGCCATACTGACTGAAGGGA--AACCGAGAG    331
                     |||||||.||.|||||.||.|.|||..||||.|  |.||  |.|||||.|
RBAM_024000__    284 TGTTCGGAACAAATGATGCGGGCATTTTGACGG--GCGATCAGCCGAGGG    331

BSNT_03822___    332 TGTCGAAGCAGCGTTTTAGAGAAAATCTGGTTTATTTTATTGAAGAAAGC    381
                     |.||.|||.|.||.||||.||||||.|||..||||||.||..|.||||||
RBAM_024000__    332 TATCAAAGAAACGGTTTAAAGAAAACCTGACTTATTTCATAAACGAAAGC    381

BSNT_03822___    382 AGAAAACACGGGATCAAGCCTATCTTAATGACGTGTATCCCAATTATAGA    431
                     |||||.|||||.||.|||||.||.|||||||||||.|||||..|||||||
RBAM_024000__    382 AGAAATCACGGCATAAAGCCGATTTTAATGACGTGCATCCCGGTTATAGA    431

BSNT_03822___    432 AGGTAATGGGAAGCATCATCTGTTTTACTATTCCAGATACCAAGCAGCTG    481
                     |||.||.||.|.|||||||||.|.|||||||.|.|||||..||||..|.|
RBAM_024000__    432 AGGAAACGGAACGCATCATCTCTATTACTATGCGAGATATAAAGCCTCAG    481

BSNT_03822___    482 CTTTTGAACCAAAAGGCGGAGCAAGGAAATGGCACAACTCATATAACGAT    531
                     |.|||.||..|||||||||.||.||.||||||||.||.||.|||||||..
RBAM_024000__    482 CCTTTAAAGAAAAAGGCGGCGCGAGAAAATGGCATAATTCCTATAACGGC    531

BSNT_03822___    532 ATTACAAG---------AGATGTGTCGAAGCGCCTGGATGTCCCTCTTGT    572
                     .||||.||         ||.||.||         ||.|.||.||.||.||
RBAM_024000__    532 GTTACGAGGCAGGTTGCAGCTGAGT---------TGAAAGTGCCGCTGGT    572

BSNT_03822___    573 AGATAACTGGAAGCATTTTATAGAAGCAGACGGCGGAAAAGCAACTGATG    622
                     .|||||||||||.||.||||||...||.||||||||.||||..||.||..
RBAM_024000__    573 GGATAACTGGAAACACTTTATACGCGCGGACGGCGGCAAAGATACAGACC    622

BSNT_03822___    623 AAGCGCTTATCCAATCTGGTTTAATAGATCCTTCTGGAAATCATATGACA    672
                     ..|||||.||||||||.||..|.||||||||.||.||||||||||||||.
RBAM_024000__    623 GGGCGCTGATCCAATCCGGACTGATAGATCCCTCCGGAAATCATATGACG    672

BSNT_03822___    673 CCTAAAGGGGCAAGGATCGTATATGAAGGAATACAAGATGGGCAGATCCT    722
                     ||.|||||.||.||.|||.||..||||||.|||.||.||||||.|.|..|
RBAM_024000__    673 CCAAAAGGCGCCAGAATCTTAATTGAAGGCATAAAAAATGGGCGGGTTTT    722

BSNT_03822___    723 GCAGCGTTGA    732
                     |.|.||.|||
RBAM_024000__    723 GGAACGCTGA    732


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03822 and RBAM_024000

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
