Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03813 and RBAM_023910

See Amino acid alignment / Visit BSNT_03813 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:09
# Commandline: needle
#    -asequence dna-align/BSNT_03813___yqeM.1.9828.seq
#    -bsequence dna-align/RBAM_023910___yqeM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03813___yqeM-RBAM_023910___yqeM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03813___yqeM-RBAM_023910___yqeM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03813___yqeM
# 2: RBAM_023910___yqeM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 754
# Identity:     569/754 (75.5%)
# Similarity:   569/754 (75.5%)
# Gaps:          26/754 ( 3.4%)
# Score: 2063.0
# 
#
#=======================================

BSNT_03813___      1 ATGATTTATCAAGGCTTTGCAAGTGTGTATGACGAGTTAATGTCACACGC     50
                     ||||||||.||||||||.||..|.||.||||||||||||||||||||.||
RBAM_023910__      1 ATGATTTACCAAGGCTTCGCCGGCGTATATGACGAGTTAATGTCACATGC     50

BSNT_03813___     51 GCCTTACGATCAATGGACAAATTGGATTGAAGCATCTCTCCCGGAAAAAG    100
                     |||.||.|||.|||||.|....|||||.|||||.|||||.||||||||.|
RBAM_023910__     51 GCCGTATGATGAATGGGCGGGCTGGATCGAAGCGTCTCTTCCGGAAAAGG    100

BSNT_03813___    101 GCCGTATTCTCGATCTGGCATGCGGCACGGGGGAAATCTCCATCCGGCTT    150
                     |..|..|.||.|||||.||.|||||.||.||.|||||.||||||.|||||
RBAM_023910__    101 GAAGGGTGCTTGATCTTGCCTGCGGAACCGGAGAAATATCCATCAGGCTT    150

BSNT_03813___    151 GCCGAAAAAGGCTTCGAGGTTACAGGCATCGATCTCAGCGAAGAGATGCT    200
                     ||.||||||||||.|||.||.||.||.||.|||.|.||.|||||.|||||
RBAM_023910__    151 GCTGAAAAAGGCTGCGAAGTCACGGGGATTGATTTGAGTGAAGATATGCT    200

BSNT_03813___    201 -TTCTTTCGCCCAGCAAAAGGTATCGAGTAGCCAGCCTATTTTATTTCTT    249
                      ..||.| ||||||||.||...|.||.|.|   ||||.|||.|.|||||.
RBAM_023910__    201 GAGCTGT-GCCCAGCAGAAAAAAACGGGAA---AGCCGATTCTTTTTCTC    246

BSNT_03813___    250 CAGCAGGATATGAGAGAGATTACCGGCTTTGATGGTCAGTTTGACGCTGT    299
                     ||||||||||||||||||.||.||||.|||||.|..||||||||.||.||
RBAM_023910__    247 CAGCAGGATATGAGAGAGCTTTCCGGTTTTGAAGAACAGTTTGATGCCGT    296

BSNT_03813___    300 TGTGATATGCTGTGACTCATTAAATTATTTAAAAACAAAAAATGATGTGA    349
                     |||.||.||||||||.||..|||||||.||||||||.|||||||||||..
RBAM_023910__    297 TGTCATCTGCTGTGATTCCCTAAATTACTTAAAAACGAAAAATGATGTCT    346

BSNT_03813___    350 TCGAA--ACCTTTAACAGTGTTTTTCGGGTATTAAAGTCTGAAGGCATAC    397
                     |  ||  |||||.||.||||||||||..||.||.|||...|..|||.|.|
RBAM_023910__    347 T--AAGCACCTTCAAAAGTGTTTTTCAAGTTTTGAAGGAGGGCGGCCTGC    394

BSNT_03813___    398 TGCTGTTTGATGTTCATTCATCTTTTAAAATTGCGGAAGTCTTTCCGGAT    447
                     |.||||||||.||.|||||..|.||||||||..||||..|.||||||||.
RBAM_023910__    395 TTCTGTTTGACGTCCATTCCCCATTTAAAATGACGGAGCTTTTTCCGGAC    444

BSNT_03813___    448 AGCACATTTGCTGACCAGGACGAAGATATCAGCTATATTTGGCAGAGCTT    497
                     |||||...|||.||.|||||.||..|.|||||||||||.|||||.|||||
RBAM_023910__    445 AGCACCCATGCGGATCAGGATGAGCAGATCAGCTATATCTGGCAAAGCTT    494

BSNT_03813___    498 TGCCGGAAGTGACGAGCTTTCTGTCATTCATGATATGTCGTTTTTTGTGT    547
                     ||||||...|||.||||||||||||||.|||||||||||.|||||.||.|
RBAM_023910__    495 TGCCGGCGATGAAGAGCTTTCTGTCATCCATGATATGTCTTTTTTCGTAT    544

BSNT_03813___    548 GGAACGGAGAAGCGTATGATCGTTTTGATGAGACACACGAGCAAAGAACG    597
                     ||||||||.||.|.|||||.||.|.|||.|||||.||.|||||||.|||.
RBAM_023910__    545 GGAACGGACAATCTTATGACCGCTATGACGAGACGCATGAGCAAAAAACA    594

BSNT_03813___    598 TTCCCGGTGGAAGAATACGAAGAAATGCTT-AAGA-ACTGCGGCTTTCAG    645
                     ||.....|.||||||||.|||.|||||||| .||| ||  |||.|||.|.
RBAM_023910__    595 TTTTACATTGAAGAATATGAACAAATGCTTGCAGAGAC--CGGATTTAAA    642

BSNT_03813___    646 CTCCATCGCGTGACAGCTGATTTTACGGATACCGAG---CCATCAGCACA    692
                     ||..|....|||||||||||||||||  |.|||| |   ||.|||.||.|
RBAM_023910__    643 CTGAAAAAGGTGACAGCTGATTTTAC--AGACCG-GCCTCCTTCAACAGA    689

BSNT_03813___    693 ATCAGAACGCCTCTTTTTCAAGGCGCAG--AAATCAAAAACCATCGTTTC    740
                     .||.|||||.||.||.||.|.|  ||||  |||.||||||||||||||  
RBAM_023910__    690 GTCTGAACGTCTTTTCTTTACG--GCAGGCAAACCAAAAACCATCGTT--    735

BSNT_03813___    741 CTAA    744
                      |||
RBAM_023910__    736 -TAA    738


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03813 and RBAM_023910

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
