Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03812 and RBAM_023900

See Amino acid alignment / Visit BSNT_03812 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:08
# Commandline: needle
#    -asequence dna-align/BSNT_03812___comER.1.9828.seq
#    -bsequence dna-align/RBAM_023900___comER.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03812___comER-RBAM_023900___comER.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03812___comER-RBAM_023900___comER.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03812___comER
# 2: RBAM_023900___comER
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 838
# Identity:     616/838 (73.5%)
# Similarity:   616/838 (73.5%)
# Gaps:          32/838 ( 3.8%)
# Score: 2171.0
# 
#
#=======================================

BSNT_03812___      1 TTGAAGATAGGCTTTATCGGCACAGGAAATATGGGTACGATCCTTATCGA     50
                     |||||.|||||||||||||||||.|||||.|||||.||||||||.||.||
RBAM_023900__      1 TTGAAAATAGGCTTTATCGGCACCGGAAACATGGGGACGATCCTGATTGA     50

BSNT_03812___     51 ATCATTTATTGAATCAAAAGCAGCCGATCCCTCAAACATGACAATCACAA    100
                     |||.|||||.||||||||.||.||||||||||||.|.||.||.|||||||
RBAM_023900__     51 ATCGTTTATCGAATCAAACGCTGCCGATCCCTCACATATCACCATCACAA    100

BSNT_03812___    101 ACCGCACAATTGAAAAAGCGTTGCACATAAAAAACCGCTACAACAGCATA    150
                     ||.|.|||||.||||||||.||..|..|||||.|.||.|.||.|.||||.
RBAM_023900__    101 ACAGAACAATCGAAAAAGCATTAAAACTAAAAGAACGTTTCAGCGGCATC    150

BSNT_03812___    151 AACGTTACCGAAAGTCTCGAAAAGCTCGTTTCTGAAAACGAGATGATTTT    200
                     .|.||.|||||...||..|||||||||||....|||||.||.||.||.||
RBAM_023900__    151 CATGTCACCGAGGATCAGGAAAAGCTCGTACAGGAAAATGAAATAATATT    200

BSNT_03812___    201 TATTTGTGTTAAGCCGCTTGATATATATCCTTTACTGGCAAGAGCGTTAC    250
                     .||||||||.||||||||.||||||||||||||.|||..||.|.....||
RBAM_023900__    201 CATTTGTGTAAAGCCGCTGGATATATATCCTTTGCTGAAAAAACTCACAC    250

BSNT_03812___    251 CTTATTTAAGAAAAGATCATATTCTCATCTCAATTACAAGCCCCGTTCAA    300
                     |..|||||.|.||||||||.|||.|.|||||.|||||.||.||||||||.
RBAM_023900__    251 CGCATTTACGGAAAGATCACATTTTAATCTCCATTACCAGTCCCGTTCAG    300

BSNT_03812___    301 ACCGAACAGCTCGAACAATA-TGTGCCGTGTCAAGTGGCTCGAGTGATCC    349
                     ||.||.|||.|.|||| ||| .||.||||||||...|||.||.||.||.|
RBAM_023900__    301 ACGGATCAGATTGAAC-ATACGGTTCCGTGTCAGACGGCCCGCGTCATTC    349

BSNT_03812___    350 CAAGTATTACGAACAGAGCGCTGGCAGGTGTTTCTCTCGTCACTTTCGGC    399
                     |.||.|||||||||.|.||..||||.||.||.||.||.||.||.||||||
RBAM_023900__    350 CGAGCATTACGAACCGCGCCTTGGCCGGCGTCTCGCTTGTTACGTTCGGC    399

BSNT_03812___    400 ACAAGCTGCGGCGAATCTGCAAAAAC-GAAAATCAATGA-GCTGATGCA-    446
                     |.|||||||.||||.|||||||||.| ||.|.||||  | |||| |.|| 
RBAM_023900__    400 AAAAGCTGCAGCGAGTCTGCAAAAGCGGATATTCAA--ACGCTG-TTCAC    446

BSNT_03812___    447 GCATATCTCTCATCCGCTGCAAATTGAAAGTGACATCACCAGGGTTGCAT    496
                     .||||||||..|.||..|..||||....||.|.|||.||.||.|..||.|
RBAM_023900__    447 TCATATCTCAAAACCTGTAGAAATCAGCAGCGGCATTACAAGAGCGGCGT    496

BSNT_03812___    497 CAGACATCGTAAGCTGCGGCCCCGCTTTTATGAGCTATCTGATTCAGCGG    546
                     |||||||.||.||||||||.||||||||||||||.|||||..|||||||.
RBAM_023900__    497 CAGACATTGTCAGCTGCGGGCCCGCTTTTATGAGTTATCTCGTTCAGCGC    546

BSNT_03812___    547 TTTATAGATGCAGCTGTTTCGGAA-------ACATCAGTGTCTAAACAGG    589
                     |||||.||.||.||.||   ||||       ||||||    |.|||.|.|
RBAM_023900__    547 TTTATTGACGCGGCAGT---GGAAGAAACGGACATCA----CCAAAGAAG    589

BSNT_03812___    590 A---CGCGATTTTGATGTGTAAGGAAATGCTTGTCGGAATGGGAAAACTG    636
                     |   ||.||||   ||||..|.|||||||||||||||..|.|||||.||.
RBAM_023900__    590 AAGCCGTGATT---ATGTCGACGGAAATGCTTGTCGGTCTCGGAAAGCTT    636

BSNT_03812___    637 TTAGAAAC--CGAATTGTATACCCTGCCTGCATTACAGGAAAAGGTTTGC    684
                     .|.|||||  .|.||  ||.||.||.||.||.||.||||||||.||.|||
RBAM_023900__    637 CTGGAAACAGGGCAT--TACACGCTTCCCGCCTTGCAGGAAAAAGTATGC    684

BSNT_03812___    685 GTTAAAGGCGGTGTAACAGGAGAAGGCATTAAAGCGCTGGAAAGCGGTGT    734
                     ||.||||||||.||.||.||.|||||..|.||.||.||.|||||||||||
RBAM_023900__    685 GTAAAAGGCGGCGTCACCGGGGAAGGACTGAAGGCTCTCGAAAGCGGTGT    734

BSNT_03812___    735 GCAGGATATGTTTCACCGGGTATTTCAAAATACTCATATGAAGTACGAGG    784
                     .|||||||||||..||||.||.|||||...|||.|||...||.|||||.|
RBAM_023900__    735 TCAGGATATGTTCAACCGTGTCTTTCAGCGTACACATGACAAATACGATG    784

BSNT_03812___    785 AGGATATTTCCGCAGTGAAAAAGCAGTTTCATGTGTAG    822
                     |.|||||.||...||||||.|||||.|||||.|||||.
RBAM_023900__    785 AAGATATATCGTTAGTGAAGAAGCAATTTCACGTGTAA    822


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03812 and RBAM_023900

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
