Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03811 and RBAM_023890
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:08
# Commandline: needle
# -asequence dna-align/BSNT_03811___comEA.1.9828.seq
# -bsequence dna-align/RBAM_023890___comEA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03811___comEA-RBAM_023890___comEA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03811___comEA-RBAM_023890___comEA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03811___comEA
# 2: RBAM_023890___comEA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 686
# Identity: 408/686 (59.5%)
# Similarity: 408/686 (59.5%)
# Gaps: 139/686 (20.3%)
# Score: 1158.0
#
#
#=======================================
BSNT_03811___ 1 ATGAATTGGTTGAATCAGCAT-AAGAAAGCAATTAT--TTTAGCGGCTTC 47
|| |.||||||.||.|| ...|||||||.|
RBAM_023890__ 1 -------------------ATGACGAAAGCGATGATGACGGAGCGGCTGC 31
BSNT_03811___ 48 TGCGG------------CTG-----TTTTC-----ACA---GCGATTATG 72
.|||| ||| ||.|| .|| |||.||.|.
RBAM_023890__ 32 GGCGGAACCTGAAAATTCTGGGCGCTTGTCTTGCGGCAGGGGCGGTTTTT 81
BSNT_03811___ 73 ATCT----------------TTCTGGCCACAGGGAAAAATAAAGAGCCGG 106
|||| ||||| ||||..|||||||||
RBAM_023890__ 82 ATCTGTATTTGGCTGTTTCGTTCTG----------AAAAGGAAGAGCCGG 121
BSNT_03811___ 107 TGAAGCAAGCTGTACC-----------AACAGAGACAGAAAATACAGTGG 145
|.||.| |||.|| || |||||...|||.| .|.||.|
RBAM_023890__ 122 TCAAAC-AGCAGT-CCGTGCTCGGCCAAACAGCCTCAGCA---TCCGTCG 166
BSNT_03811___ 146 TAAAGCAGGAAGCAAACAACGACGAGTCAAACGAAACAATTGTGATAGAC 195
.||| |||| ||.|||....||..|||.|..|||.||||.||.
RBAM_023890__ 167 ------CGGA--CAAA-AAAGACACCGCAGCCGATAAGATTATGATTGAT 207
BSNT_03811___ 196 ATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGAACAGGGGA 245
.|.|||||.||.||.|...||||.|||||.|||||||||..|.|.||.||
RBAM_023890__ 208 GTGAAAGGCGCGGTCCGAAATCCCGGCGTGTATGAAATGAAAGCGGGAGA 257
BSNT_03811___ 246 CAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAA---- 291
|||.||..|.||.||.|||||.|||||.||||| || ||||.||
RBAM_023890__ 258 CAGGGTGACGCAAGCCATTGAAAAAGCCGGCGG--CC--TGAAGAAAAAG 303
BSNT_03811___ 292 GCAGACGAAGCGCAAGTAAATTTGGCGGAGATTCTGCAGGACGGGACAGT 341
||.||.|||..|.|.||.|||||.||.|||...||||||||||||||..|
RBAM_023890__ 304 GCGGATGAATTGAATGTTAATTTAGCAGAGCAGCTGCAGGACGGGACGAT 353
BSNT_03811___ 342 GGTGTACATCCCGA---AAAAGGGAGAGGA-AATAGCAGTGC----AGCA 383
.||.||.||.|||| ||...|.|||||| |||.|| | |.||
RBAM_023890__ 354 TGTTTATATTCCGAGTGAAGGCGAAGAGGAGAATCGC----CCGAAAACA 399
BSNT_03811___ 384 AGGTGGCGGAGGGTCAGTCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGA 433
||||.||||.| |||| |.|||.|.||| .||.|
RBAM_023890__ 400 -----GCGGCGGGTGA----AAAG-------GAGAATGCAGC---TGTCA 430
BSNT_03811___ 434 ATATCAATACAGCAACCTTAGAGGAGTTACAAGGC-ATCTCAGGGGTGGG 482
|||||||||..|||.|..|.||.||..|.| |||| ||.||.||||||||
RBAM_023890__ 431 ATATCAATATGGCATCTCTGGACGAACTTC-AGGCGATTTCCGGGGTGGG 479
BSNT_03811___ 483 GCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAAGAAAACGGGCGTT 532
||.....|||||.|||||.|||||.||.|||||.|||||||||||.||.|
RBAM_023890__ 480 GCAGAAAAAAGCGGAAGCGATTATCGCCTACCGAGAAGAAAACGGACGGT 529
BSNT_03811___ 533 TCCAAACAATTGAAGATATCACTAAGGTTTCAGGAATAGGTGAAAAGTCA 582
|.||.||...|||||||.|.|..||.||.|||||..|.||.|||||||||
RBAM_023890__ 530 TTCAGACTGCTGAAGATTTGATGAATGTATCAGGCTTTGGAGAAAAGTCA 579
BSNT_03811___ 583 TTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA 618
||||||...|||||..||||||||||.|||||||||
RBAM_023890__ 580 TTTGAGCGGATAAAAACTTCCATTACGGTAAAGTGA 615
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